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Bujnicki Lab Homepage

Pathways

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mRNA metabolic pathways:

Pathway name Species Status
mRNA decay Escherichia coli
Deadenylation-dependent decay Homo sapiens
NGD (No-go decay) Homo sapiens n.d.
NMD (Nonsense-mediated decay) Homo sapiens
NSD (Nonstop decay) Homo sapiens
histone mRNA 3' end maturation Homo sapiens
mRNA capping Homo sapiens
mRNA polyadenylation Homo sapiens
mRNA splicing - major pathway Homo sapiens
mRNA splicing - minor pathway Homo sapiens
Deadenylation-dependent decay Saccharomyces cerevisiae
Deadenylation-independent decay Saccharomyces cerevisiae
Endonuclease-mediated decay Saccharomyces cerevisiae
NGD (No-go decay) Saccharomyces cerevisiae
NMD (Nonsense-mediated decay) Saccharomyces cerevisiae
NSD (Nonstop decay) Saccharomyces cerevisiae
mRNA capping Saccharomyces cerevisiae

rRNA metabolic pathways:

Pathway name Species Status
RNase I-Mediated rRNA degradation Escherichia coli
Stress Response rRNA degradation Escherichia coli
rRNA maturation Escherichia coli
rRNA quality control Escherichia coli
rRNA maturation Homo sapiens
18S NRD (18S nonfunctional rRNA decay ) Saccharomyces cerevisiae
25S NRD (25S nonfunctional rRNA decay) Saccharomyces cerevisiae
rRNA maturation Saccharomyces cerevisiae

tRNA metabolic pathways:

Pathway name Species Status
tRNA maturation Escherichia coli
tRNA maturation Homo sapiens
RTD (Rapid tRNA decay) Saccharomyces cerevisiae
tRNA maturation Saccharomyces cerevisiae
tRNA nuclear surveillance Saccharomyces cerevisiae

microRNA metabolic pathways:

Pathway name Species Status
microRNA biogenesis Homo sapiens
microRNA decay Homo sapiens

tRNA-derived small RNA metabolic pathways:

Pathway name Species Status
tRFs biogenesis (biogenesis of tRNA-derived RNA fragments) Homo sapiens

stress-induced tRNA-derived RNA metabolic pathways:

Pathway name Species Status
tiRNA biogenesis (biogenesis of stress-induced tRNA-derived RNAs) Homo sapiens
tiRNA biogenesis (biogenesis of stress-induced tRNA-derived RNAs) Saccharomyces cerevisiae

annotated by RNApathwaysDB.
not yet annotated by RNApathwaysDB.
n.a. - not available in a given organism
n.d. - not yet described in a given organism

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