Modomics - A Database of RNA Modifications

ID Card:

Full name: NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
UniProt: Q8VYC4
Alpha Fold Predicted Structure: AF-Q8VYC4-F1
Enzyme type: methyltransferase



Protein sequence:

MAQLLSFRVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRAVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL

Comments:

tRNA m5C methyltransferase contributing to an early and sensitive bolting/flowering phenotype, suggesting that the timing of bolting and flowering is also regulated at the epitranscriptomic level.





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M A Q L L S F R V Y L S A E T Q K A S P G S F K R T Q K T R K P F S P D R R G P V A P S R K S Q N L N L E V S P H R A V S A V R L M R I E Y G G A F A D L L N E K G K G S G S N E M S Y V E R T I G F R T R D L D D R D L R L V T D V V G G T I R W R R Y L D H L I G S L C H N E R T F R N M E P L L L Q I L R I G V Y E I I K R D M P P Y A V V D E N V R L A K V A L R P G A G D F V N G I L R K L V S L K E K D A L P L P K V E G D D R A Q A R A L A T L H S H P V W M V R R W V K Y L G L D E A T K L M I W N N N D P G F S L R A N T G R D I T R A D L V E R L N S L K V P H E L S L H L E E F V R I K T G L Q T V V Q A G L L K E G I C S V Q D E S A G L I V S V V K P Q P G E R I M D A C A A P G G K T L F M A S C L K G Q G M I Y A M D V N E G R L R I L G E T A K S H Q V D G L I T T I H S D L R V F A E T N E V Q Y D K V L L D A P C S G L G V L S K R A D L R W N R K L E D M L E L T K L Q D E L L D S A S K L V K H G G V L V Y S T C S I D P E E N E G R V E A F L L R H P E F T I D P V T S F V P S S F V T S Q G F F L S N P V K H S L D G A F A A R L V R A L

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q8VYC4-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q8VYC4-F1.cif  
DSSP Secondary Structures   Q8VYC4.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
RNA methyltransferases in plants: Breakthroughs in function and evolution Ricardo Ferraz 1, Sílvia Coimbra 2, Sandra Correia 3, Jorge Canhoto 4 [details] 36502609 10.1016/j.plaphy.2022.12.001