General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000392539
Gene ID:	ENSG00000128714
Gene Name:	HOXD13
Sequence (UNICHARACTER ENCODING)	GUUGGAGGGCAGGCGGGCCGGAGGCGGGAGGCUCACAGAGGGAGAGAGGGCUAGAGGAAGAGGGCGGGAGCGAGCGAACCAGAGAGAAAGGAGAGGAGGGAGGAGGCGCGCCGCGCCAUGGUGUCCUGCGCGGGGCCAGGGCCAGGGCCGGGGCCGGGCCAGGCCGGGCCAUGAGCCGCGCCGGGAGCUGGGЖCAUGGACGGGCUGCGGGCAGACGGCGGGGGCGCCGGUGGCGCCCCGGCCUCUUCCPCCUCCUCAUCGGUGGCGGCGGCGGCGGCGUCAGGCCAGUGCCGCGGCUUUCUCUCCGCGCCUGUGUUCGCCGGGACGCAUUCGGGGCGGGCGGCGGCGGCGGCAGCGGCGGCUGCGGCGGCGGCGGCGGCAGCCUCCGGCUUUGCGUACCCCGGGЖCCUCUGAGCGCACGGGCUCUUCCUCGUCGUCGUCCUCUUCUGCCGUUGUAGCGGCGCGCCCGGAGGCUCCCCCAGCCAAAGAGUGCCCAGCACCCACGCCUGCAGCGGCCGCUGCAGCGCCCCCGAGCGCUCCAGCGCUGGGCUACGGCUACCACUUCGGCAACGGCUACUACAGCUGCCGUAUGUCGCACGGCGUGGGCUUACAGCAGAAUGCGCUCAAGUCAUCGCCGCACGCCUCGCUGGGAGGCUUUCCCGUGGAGAAGUACAUGGЖCGUGUCAGGCCUGGCGAGCAGCAGCGUACCGGCCAACGAGGUGCCAGCGCGAGCCAAGGAGGUAUCCUUCUACCAGGGCUAUACGAGCCCUUACCAGCACGUGCCCGGCUAUAUCGACAUGGUGUCCACUUUCGGCUCCGGGGAGCCUCGGCACGAGGCCUACAUCUCCAUGGAGGGGUACCAGUCCUGGACGCUGGCUAACGGGUGGAЖCAGCCAGGUGUACUGCACCAAGGACCAGCCACAGGGGUCCCACUUUUGGAAAUCUUCCUUUCCAGGGGAUGUGGCUCUAAAUCAGCCGGACAUGUGCGUCUACCGAAGAGGGAGGAAGAAGAGAGUGCCUUACACCAAЖCUGCAGCUUAAAGAЖCUGGAGAACGAGUAUGCCAUUAACAAAUUCAUUAACAAGGЖCAAGCGGCGGCGUAUCUCGGCUGCUACGAACCUAUCUGAGAGЖCAAGUGACCAUUUGGUUUCAGAACCGAAGAGUGAAGGACAAGAAAAUUGUCUCCAAGCUCAAAGAUЖCUGUCUCCUGAUGUGGUCCAGGUUGGCCACAGACAGCUUAGAAGCCAUUCGGUUGUCUCCAAAAGGCCUUUGGAAAGЖCUUGAAUAUGUAUUUAAUUCCCCCCACCCCCUGCCAAUGGUGGCAAAUUUUGUGAAUUGUUUUUCUCUCUUCCCCUUAUCUGGCUCUAAAACCUUCUGCUGCCCAACCUGACUUUGUAGUUCUGAUUUUUACUUGUUUAUUAUUGGUUUUGUUCUUGCCUAGGGUUUUUAAAAUAUCUGUUUUUAAUGUUUUGUUUCUCCCUCCAGGCCAGUAUAAAGGGACUUGAAGUAUUUUUUAAUAAUCCGCCCCCCAAUGAACUUCAGAAGUGCCAUUCUGAUUUAAGGGUUUUUUUAAAAAAUUACUPUAUUUGUUCAUUCCCAGCACUGAUUAUCUUCAUAAUCCAUUAGGACAGAAUGGUUUUCAGUCGUUCAUAUCCUGUAAUUAGGUAAUUGAAUCAUUAGCUCUCAGCAGUUGCCCUGAGGCAAGUGGAAAGGCAGGCAGUGCUCUGGGGUCACCGAGAAAGUCUAAAAACAGGAGGCUGAAGGUACUGUGAUGGCUPUAAAAAUGGCCACCUUAUUAAAUAGGGAUUGUAUCAAUAUUGAAAUGAAGACAAUCUUUCCAACUUUGGGUGUUUCACUUGCUGUUUUAAUUGUUUGUUUUUAACACUUUGUAGGUUUGUGUUUUCAUAAUCUPUAAUUUGAAACUCAUGUGUCCUCAUGGAUCGUGGAUGCCUUCAUUUCUUGAGCUCUCAAUGCAGACAUUUAAAUGGCUGCAAUCAGUAGAGUGACCCGCGGAUGGCAUAAAUGCACCUCCUUUUCUUGGCCUUGGAUCUAUGGGUCUGGGAUUGUGGUCAUCUCCUCAAUCCUCAAAAAGAGGCUGAAUCAAUGUGGCCGUGGGUGGGAACUUACAUACAGAACCCAAUGAAGAACUUGЖCUGUCUAAЖCAAGGGGGCCUCGCAUGGAGCUGUAAAGCAUCUAACAAAUAUGAAAAAUGUGAAGUUCCAAGGUCCAAGAAGAAAAAUAAUGAUGUUUCUGAAAGUGAUGAUAAAUAAUUACUUUUAAAGUGCUGCAUAUUUAUACAAUUGAGAGAUUAUUUUUGUAAAUGCAAUGUCUGUGAGCUGGGAUACAUGGGCAGUGCUUCAGACAUUUAAAAAUCACUUUUUACUCCUAGGGAGAUGCCAAUAAЖCAGAACUCUUUUGUUUCUUCUGA
Sequence (SHORT NAMES ENCODING)	GUUGGAGGGCAGGCGGGCCGGAGGCGGGAGGCUCACAGAGGGAGAGAGGGCUAGAGGAAGAGGGCGGGAGCGAGCGAACCAGAGAGAAAGGAGAGGAGGGAGGAGGCGCGCCGCGCCAUGGUGUCCUGCGCGGGGCCAGGGCCAGGGCCGGGGCCGGGCCAGGCCGGGCCAUGAGCCGCGCCGGGAGCUGGGm6ACAUGGACGGGCUGCGGGCAGACGGCGGGGGCGCCGGUGGCGCCCCGGCCUCUUCCYCCUCCUCAUCGGUGGCGGCGGCGGCGGCGUCAGGCCAGUGCCGCGGCUUUCUCUCCGCGCCUGUGUUCGCCGGGACGCAUUCGGGGCGGGCGGCGGCGGCGGCAGCGGCGGCUGCGGCGGCGGCGGCGGCAGCCUCCGGCUUUGCGUACCCCGGGm6ACCUCUGAGCGCACGGGCUCUUCCUCGUCGUCGUCCUCUUCUGCCGUUGUAGCGGCGCGCCCGGAGGCUCCCCCAGCCAAAGAGUGCCCAGCACCCACGCCUGCAGCGGCCGCUGCAGCGCCCCCGAGCGCUCCAGCGCUGGGCUACGGCUACCACUUCGGCAACGGCUACUACAGCUGCCGUAUGUCGCACGGCGUGGGCUUACAGCAGAAUGCGCUCAAGUCAUCGCCGCACGCCUCGCUGGGAGGCUUUCCCGUGGAGAAGUACAUGGm6ACGUGUCAGGCCUGGCGAGCAGCAGCGUACCGGCCAACGAGGUGCCAGCGCGAGCCAAGGAGGUAUCCUUCUACCAGGGCUAUACGAGCCCUUACCAGCACGUGCCCGGCUAUAUCGACAUGGUGUCCACUUUCGGCUCCGGGGAGCCUCGGCACGAGGCCUACAUCUCCAUGGAGGGGUACCAGUCCUGGACGCUGGCUAACGGGUGGAm6ACAGCCAGGUGUACUGCACCAAGGACCAGCCACAGGGGUCCCACUUUUGGAAAUCUUCCUUUCCAGGGGAUGUGGCUCUAAAUCAGCCGGACAUGUGCGUCUACCGAAGAGGGAGGAAGAAGAGAGUGCCUUACACCAAm6ACUGCAGCUUAAAGAm6ACUGGAGAACGAGUAUGCCAUUAACAAAUUCAUUAACAAGGm6ACAAGCGGCGGCGUAUCUCGGCUGCUACGAACCUAUCUGAGAGm6ACAAGUGACCAUUUGGUUUCAGAACCGAAGAGUGAAGGACAAGAAAAUUGUCUCCAAGCUCAAAGAUm6ACUGUCUCCUGAUGUGGUCCAGGUUGGCCACAGACAGCUUAGAAGCCAUUCGGUUGUCUCCAAAAGGCCUUUGGAAAGm6ACUUGAAUAUGUAUUUAAUUCCCCCCACCCCCUGCCAAUGGUGGCAAAUUUUGUGAAUUGUUUUUCUCUCUUCCCCUUAUCUGGCUCUAAAACCUUCUGCUGCCCAACCUGACUUUGUAGUUCUGAUUUUUACUUGUUUAUUAUUGGUUUUGUUCUUGCCUAGGGUUUUUAAAAUAUCUGUUUUUAAUGUUUUGUUUCUCCCUCCAGGCCAGUAUAAAGGGACUUGAAGUAUUUUUUAAUAAUCCGCCCCCCAAUGAACUUCAGAAGUGCCAUUCUGAUUUAAGGGUUUUUUUAAAAAAUUACUYUAUUUGUUCAUUCCCAGCACUGAUUAUCUUCAUAAUCCAUUAGGACAGAAUGGUUUUCAGUCGUUCAUAUCCUGUAAUUAGGUAAUUGAAUCAUUAGCUCUCAGCAGUUGCCCUGAGGCAAGUGGAAAGGCAGGCAGUGCUCUGGGGUCACCGAGAAAGUCUAAAAACAGGAGGCUGAAGGUACUGUGAUGGCUYUAAAAAUGGCCACCUUAUUAAAUAGGGAUUGUAUCAAUAUUGAAAUGAAGACAAUCUUUCCAACUUUGGGUGUUUCACUUGCUGUUUUAAUUGUUUGUUUUUAACACUUUGUAGGUUUGUGUUUUCAUAAUCUYUAAUUUGAAACUCAUGUGUCCUCAUGGAUCGUGGAUGCCUUCAUUUCUUGAGCUCUCAAUGCAGACAUUUAAAUGGCUGCAAUCAGUAGAGUGACCCGCGGAUGGCAUAAAUGCACCUCCUUUUCUUGGCCUUGGAUCUAUGGGUCUGGGAUUGUGGUCAUCUCCUCAAUCCUCAAAAAGAGGCUGAAUCAAUGUGGCCGUGGGUGGGAACUUACAUACAGAACCCAAUGAAGAACUUGm6ACUGUCUAAm6ACAAGGGGGCCUCGCAUGGAGCUGUAAAGCAUCUAACAAAUAUGAAAAAUGUGAAGUUCCAAGGUCCAAGAAGAAAAAUAAUGAUGUUUCUGAAAGUGAUGAUAAAUAAUUACUUUUAAAGUGCUGCAUAUUUAUACAAUUGAGAGAUUAUUUUUGUAAAUGCAAUGUCUGUGAGCUGGGAUACAUGGGCAGUGCUUCAGACAUUUAAAAAUCACUUUUUACUCCUAGGGAGAUGCCAAUAAm6ACAGAACUCUUUUGUUUCUUCUGA
Sequence (MODOMICS CODE ENCODING)	GUUGGAGGGCAGGCGGGCCGGAGGCGGGAGGCUCACAGAGGGAGAGAGGGCUAGAGGAAGAGGGCGGGAGCGAGCGAACCAGAGAGAAAGGAGAGGAGGGAGGAGGCGCGCCGCGCCAUGGUGUCCUGCGCGGGGCCAGGGCCAGGGCCGGGGCCGGGCCAGGCCGGGCCAUGAGCCGCGCCGGGAGCUGGG2000000006ACAUGGACGGGCUGCGGGCAGACGGCGGGGGCGCCGGUGGCGCCCCGGCCUCUUCC2000000009UCCUCCUCAUCGGUGGCGGCGGCGGCGGCGUCAGGCCAGUGCCGCGGCUUUCUCUCCGCGCCUGUGUUCGCCGGGACGCAUUCGGGGCGGGCGGCGGCGGCGGCAGCGGCGGCUGCGGCGGCGGCGGCGGCAGCCUCCGGCUUUGCGUACCCCGGG2000000006ACCUCUGAGCGCACGGGCUCUUCCUCGUCGUCGUCCUCUUCUGCCGUUGUAGCGGCGCGCCCGGAGGCUCCCCCAGCCAAAGAGUGCCCAGCACCCACGCCUGCAGCGGCCGCUGCAGCGCCCCCGAGCGCUCCAGCGCUGGGCUACGGCUACCACUUCGGCAACGGCUACUACAGCUGCCGUAUGUCGCACGGCGUGGGCUUACAGCAGAAUGCGCUCAAGUCAUCGCCGCACGCCUCGCUGGGAGGCUUUCCCGUGGAGAAGUACAUGG2000000006ACGUGUCAGGCCUGGCGAGCAGCAGCGUACCGGCCAACGAGGUGCCAGCGCGAGCCAAGGAGGUAUCCUUCUACCAGGGCUAUACGAGCCCUUACCAGCACGUGCCCGGCUAUAUCGACAUGGUGUCCACUUUCGGCUCCGGGGAGCCUCGGCACGAGGCCUACAUCUCCAUGGAGGGGUACCAGUCCUGGACGCUGGCUAACGGGUGGA2000000006ACAGCCAGGUGUACUGCACCAAGGACCAGCCACAGGGGUCCCACUUUUGGAAAUCUUCCUUUCCAGGGGAUGUGGCUCUAAAUCAGCCGGACAUGUGCGUCUACCGAAGAGGGAGGAAGAAGAGAGUGCCUUACACCAA2000000006ACUGCAGCUUAAAGA2000000006ACUGGAGAACGAGUAUGCCAUUAACAAAUUCAUUAACAAGG2000000006ACAAGCGGCGGCGUAUCUCGGCUGCUACGAACCUAUCUGAGAG2000000006ACAAGUGACCAUUUGGUUUCAGAACCGAAGAGUGAAGGACAAGAAAAUUGUCUCCAAGCUCAAAGAU2000000006ACUGUCUCCUGAUGUGGUCCAGGUUGGCCACAGACAGCUUAGAAGCCAUUCGGUUGUCUCCAAAAGGCCUUUGGAAAG2000000006ACUUGAAUAUGUAUUUAAUUCCCCCCACCCCCUGCCAAUGGUGGCAAAUUUUGUGAAUUGUUUUUCUCUCUUCCCCUUAUCUGGCUCUAAAACCUUCUGCUGCCCAACCUGACUUUGUAGUUCUGAUUUUUACUUGUUUAUUAUUGGUUUUGUUCUUGCCUAGGGUUUUUAAAAUAUCUGUUUUUAAUGUUUUGUUUCUCCCUCCAGGCCAGUAUAAAGGGACUUGAAGUAUUUUUUAAUAAUCCGCCCCCCAAUGAACUUCAGAAGUGCCAUUCUGAUUUAAGGGUUUUUUUAAAAAAUUACU2000000009UUAUUUGUUCAUUCCCAGCACUGAUUAUCUUCAUAAUCCAUUAGGACAGAAUGGUUUUCAGUCGUUCAUAUCCUGUAAUUAGGUAAUUGAAUCAUUAGCUCUCAGCAGUUGCCCUGAGGCAAGUGGAAAGGCAGGCAGUGCUCUGGGGUCACCGAGAAAGUCUAAAAACAGGAGGCUGAAGGUACUGUGAUGGCU2000000009UUAAAAAUGGCCACCUUAUUAAAUAGGGAUUGUAUCAAUAUUGAAAUGAAGACAAUCUUUCCAACUUUGGGUGUUUCACUUGCUGUUUUAAUUGUUUGUUUUUAACACUUUGUAGGUUUGUGUUUUCAUAAUCU2000000009UUAAUUUGAAACUCAUGUGUCCUCAUGGAUCGUGGAUGCCUUCAUUUCUUGAGCUCUCAAUGCAGACAUUUAAAUGGCUGCAAUCAGUAGAGUGACCCGCGGAUGGCAUAAAUGCACCUCCUUUUCUUGGCCUUGGAUCUAUGGGUCUGGGAUUGUGGUCAUCUCCUCAAUCCUCAAAAAGAGGCUGAAUCAAUGUGGCCGUGGGUGGGAACUUACAUACAGAACCCAAUGAAGAACUUG2000000006ACUGUCUAA2000000006ACAAGGGGGCCUCGCAUGGAGCUGUAAAGCAUCUAACAAAUAUGAAAAAUGUGAAGUUCCAAGGUCCAAGAAGAAAAAUAAUGAUGUUUCUGAAAGUGAUGAUAAAUAAUUACUUUUAAAGUGCUGCAUAUUUAUACAAUUGAGAGAUUAUUUUUGUAAAUGCAAUGUCUGUGAGCUGGGAUACAUGGGCAGUGCUUCAGACAUUUAAAAAUCACUUUUUACUCCUAGGGAGAUGCCAAUAA2000000006ACAGAACUCUUUUGUUUCUUCUGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	193	249	405	676	886	1025	1040	1081	1124	1191	1269	1573	1768	1902	2142	2151	2393
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	Y	m6A	m6A	m6A
Genomic Coordinates	2:176092913:+	2:176092969:+	2:176093125:+	2:176093396:+	2:176093606:+	2:176094553:+	2:176094568:+	2:176094609:+	2:176094652:+	2:176094719:+	2:176094797:+	2:176095101:+	2:176095296:+	2:176095430:+	2:176095670:+	2:176095679:+	2:176095921:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8