Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000371523
Gene ID: ENSG00000020256
Gene Name: ZFP64
Sequence (UNICHARACTER ENCODING) CUGCGCUUCUGAAAUUUUAAUGGGCAAACGAAUCACCUGGGGAUCUCGUUAAAAUGCAGACACGGUUUCUCAAACUUUAAUGUGCAUGCGAAUCACCUGGGGAUCUUGUUAAAAUGCAGAUUCUGAUUCAGCGGGUCUGGGGUAGAGCCCGAGAGUCUGCAUUUCUAACGAGCUCCCAGGUGGCGCGGGCUGCCCGGGAGCGGACCGCAAGUCCGCGGGACUCCUGGGGUCUUGGCUCCAGGCCAAUCAGCCGUCAGGЖCUCUUGAUAAAUCGCCCUGCUCGGCUGAUGAGCAGAAUUGCCGGGACAUGCGCGUUCCGGCCGAAGGGGGGUAAUUUCCGAACUCCGGGAAUUCGUUGUGUGAAGUAGGCCACUCCUAGGGACGCGCGGGGAGCCCGGUCCUCGCGCCAUGUCGCGGCGCAAGCAGGCCAAGCCCCAGCACCUCAACUCCGAGGAGCCGCGGCCUGCGCGCCGGGAGUGUGCGGAGGUGGCCCCGCAGGUGGCGGGGGAGCCGGCUUCAGAACUUGAUGAUGAUGUUCCAAAAGCAAACUGCCUCUCCACUGAAAGCACUGACACUCCGAAGGCCCCUGUCAUCACUCUUCCCUCAGAGGCAAGGGAACAAAUGGCCACCCUUGGAGAGAGGACGUUCAACUGUUGCUACCCAGGUUGCCACUUCAAAACUGUCCAUGGCAUGAAAGACUUGGACCGCCAUCUCAGAAUCCACACGGGAGACAAACCGCACAAGUGUGAGUUCUGUGACAAGUGCUUCAGCCGGAAGGACAACCUGACCAUGCACAUGCGGUGCCACACCAGUGUGAAGCCACACAAGUGUCACCUGUGUGACUACGCUGCCGUGGACAGCAGUAGCCUCAAGAAGCACCUGCGGAUCCACUCUGAUGAGCGGCCGUACЖAAUGCCAGCUCUGCCCCUAUGCCAGCCGCAACUCCAGCCAGCUCACCGUCCACCUGCGAUCUCACACGGGGGAUACCCCCUUCCAGUGCUGGCUCUGUAGCGCCAAGUUCAAAAUCAGCUCGGЖCUUGAAAAGGCACAUGAUCGUGCACUCGGGGGAGAAGCCUUUCAAGUGCGAGUUCUGCGACGUCCGCUGCACCAUGAAGGCGAAUCUCAAAUCGCACAPCCGCAUCAAGCACACCUUCAAAUGUCUGCACUGUGCCUUCCAGGGCCGGGЖCCGGGCUGACCUCCUGGAGCACAGCCGGCUGCACCAGGCCGACCACCCGGAGAAGUGUCCAGAGUGCAGCUACUCCUGCUCCAGCGCGGCCGCCCUGCGCGUGCACAGCAGAGUCCACUGUAAGGЖCCGUCCCUUCAAGUGUGACUUCUGCAGCUUCGACACGAAGCGGCCCAGCAGCCUGGCCAAGCACGUCGACAAGGUGCACAGGGЖCGAGGCCAAGACGGAGAACCGGGCCCCUCUGGGCAAGGAAGGGCUCAGAGAGGGCAGCUCCCAGCACGUGGCCAAGAUCGUGACGCAGAGGGCCUUCCGCUGUGAGACCUGCGGCGCCUCCUUCGUCAGGGAUGACUCUCUGAGAUGCCACAAGAAGCAGCACAGUGAUCAGAGUGAGAACAAGAЖCUCAGЖCUUGGUCACCUUCCCACCGGAAAGCGGUGCCUCGGGЖCAGCUCAGCACCCUGGUCUCCGUGGGGCAGCUCGAGGCUCCCCUAGAGCCCAGCCAAGACCUCUAGCUCAGCCGAAGAGGGUGGUCAGCUGUCGGAЖCUUCUGACCAGUGCUGUUGCCCAGCCCUCCAGAGGUGAGGCCACUGAGAGЖCAGGCUUUGGGCACCACUUCUGGGGCUGGCCGCUCCAACUUCACAGGCCUUCAGAGGCGAUGGCUGGGCGACAGUGACGAAAGCAAAGCAAAGCAGGGCUGUGGAGACACUCCUCGCAUUUGUCUCUUCCCUCCAAGGЖUUAUCUGAGCAAGUCGACUUGUUCAUUCAAAGGCGGGGUCUGCCAAGCCCUGCUCUAUCCAAUGGGGAUAGCUUCUACGUAACGGЖUUCCAAUUUUAAAЖCUGAUCCAUCUCUGAUGGAAUUAUUAAACUUAGACGAUAUAGAAAACUAAAACUAAUCUCUAGAGUGGAAAGGGUUAAAGUGAGGAAGGUGUACGUGAAGGGUCUGGGGUUGCUGGAAAACUUCUAUUUCAUAACCUGGGUGAUCGUUCUAAGAGUGUUUGCCUUAUAUGUUUGUGUGGUUUCUUUUACCUGUUGUCUUACAAUAAAAAAGGCAGACUCAUGGUA
Sequence (SHORT NAMES ENCODING) CUGCGCUUCUGAAAUUUUAAUGGGCAAACGAAUCACCUGGGGAUCUCGUUAAAAUGCAGACACGGUUUCUCAAACUUUAAUGUGCAUGCGAAUCACCUGGGGAUCUUGUUAAAAUGCAGAUUCUGAUUCAGCGGGUCUGGGGUAGAGCCCGAGAGUCUGCAUUUCUAACGAGCUCCCAGGUGGCGCGGGCUGCCCGGGAGCGGACCGCAAGUCCGCGGGACUCCUGGGGUCUUGGCUCCAGGCCAAUCAGCCGUCAGGm6ACUCUUGAUAAAUCGCCCUGCUCGGCUGAUGAGCAGAAUUGCCGGGACAUGCGCGUUCCGGCCGAAGGGGGGUAAUUUCCGAACUCCGGGAAUUCGUUGUGUGAAGUAGGCCACUCCUAGGGACGCGCGGGGAGCCCGGUCCUCGCGCCAUGUCGCGGCGCAAGCAGGCCAAGCCCCAGCACCUCAACUCCGAGGAGCCGCGGCCUGCGCGCCGGGAGUGUGCGGAGGUGGCCCCGCAGGUGGCGGGGGAGCCGGCUUCAGAACUUGAUGAUGAUGUUCCAAAAGCAAACUGCCUCUCCACUGAAAGCACUGACACUCCGAAGGCCCCUGUCAUCACUCUUCCCUCAGAGGCAAGGGAACAAAUGGCCACCCUUGGAGAGAGGACGUUCAACUGUUGCUACCCAGGUUGCCACUUCAAAACUGUCCAUGGCAUGAAAGACUUGGACCGCCAUCUCAGAAUCCACACGGGAGACAAACCGCACAAGUGUGAGUUCUGUGACAAGUGCUUCAGCCGGAAGGACAACCUGACCAUGCACAUGCGGUGCCACACCAGUGUGAAGCCACACAAGUGUCACCUGUGUGACUACGCUGCCGUGGACAGCAGUAGCCUCAAGAAGCACCUGCGGAUCCACUCUGAUGAGCGGCCGUACm6AAAUGCCAGCUCUGCCCCUAUGCCAGCCGCAACUCCAGCCAGCUCACCGUCCACCUGCGAUCUCACACGGGGGAUACCCCCUUCCAGUGCUGGCUCUGUAGCGCCAAGUUCAAAAUCAGCUCGGm6ACUUGAAAAGGCACAUGAUCGUGCACUCGGGGGAGAAGCCUUUCAAGUGCGAGUUCUGCGACGUCCGCUGCACCAUGAAGGCGAAUCUCAAAUCGCACAYCCGCAUCAAGCACACCUUCAAAUGUCUGCACUGUGCCUUCCAGGGCCGGGm6ACCGGGCUGACCUCCUGGAGCACAGCCGGCUGCACCAGGCCGACCACCCGGAGAAGUGUCCAGAGUGCAGCUACUCCUGCUCCAGCGCGGCCGCCCUGCGCGUGCACAGCAGAGUCCACUGUAAGGm6ACCGUCCCUUCAAGUGUGACUUCUGCAGCUUCGACACGAAGCGGCCCAGCAGCCUGGCCAAGCACGUCGACAAGGUGCACAGGGm6ACGAGGCCAAGACGGAGAACCGGGCCCCUCUGGGCAAGGAAGGGCUCAGAGAGGGCAGCUCCCAGCACGUGGCCAAGAUCGUGACGCAGAGGGCCUUCCGCUGUGAGACCUGCGGCGCCUCCUUCGUCAGGGAUGACUCUCUGAGAUGCCACAAGAAGCAGCACAGUGAUCAGAGUGAGAACAAGAm6ACUCAGm6ACUUGGUCACCUUCCCACCGGAAAGCGGUGCCUCGGGm6ACAGCUCAGCACCCUGGUCUCCGUGGGGCAGCUCGAGGCUCCCCUAGAGCCCAGCCAAGACCUCUAGCUCAGCCGAAGAGGGUGGUCAGCUGUCGGAm6ACUUCUGACCAGUGCUGUUGCCCAGCCCUCCAGAGGUGAGGCCACUGAGAGm6ACAGGCUUUGGGCACCACUUCUGGGGCUGGCCGCUCCAACUUCACAGGCCUUCAGAGGCGAUGGCUGGGCGACAGUGACGAAAGCAAAGCAAAGCAGGGCUGUGGAGACACUCCUCGCAUUUGUCUCUUCCCUCCAAGGm6AUUAUCUGAGCAAGUCGACUUGUUCAUUCAAAGGCGGGGUCUGCCAAGCCCUGCUCUAUCCAAUGGGGAUAGCUUCUACGUAACGGm6AUUCCAAUUUUAAAm6ACUGAUCCAUCUCUGAUGGAAUUAUUAAACUUAGACGAUAUAGAAAACUAAAACUAAUCUCUAGAGUGGAAAGGGUUAAAGUGAGGAAGGUGUACGUGAAGGGUCUGGGGUUGCUGGAAAACUUCUAUUUCAUAACCUGGGUGAUCGUUCUAAGAGUGUUUGCCUUAUAUGUUUGUGUGGUUUCUUUUACCUGUUGUCUUACAAUAAAAAAGGCAGACUCAUGGUA
Sequence (MODOMICS CODE ENCODING) CUGCGCUUCUGAAAUUUUAAUGGGCAAACGAAUCACCUGGGGAUCUCGUUAAAAUGCAGACACGGUUUCUCAAACUUUAAUGUGCAUGCGAAUCACCUGGGGAUCUUGUUAAAAUGCAGAUUCUGAUUCAGCGGGUCUGGGGUAGAGCCCGAGAGUCUGCAUUUCUAACGAGCUCCCAGGUGGCGCGGGCUGCCCGGGAGCGGACCGCAAGUCCGCGGGACUCCUGGGGUCUUGGCUCCAGGCCAAUCAGCCGUCAGG2000000006ACUCUUGAUAAAUCGCCCUGCUCGGCUGAUGAGCAGAAUUGCCGGGACAUGCGCGUUCCGGCCGAAGGGGGGUAAUUUCCGAACUCCGGGAAUUCGUUGUGUGAAGUAGGCCACUCCUAGGGACGCGCGGGGAGCCCGGUCCUCGCGCCAUGUCGCGGCGCAAGCAGGCCAAGCCCCAGCACCUCAACUCCGAGGAGCCGCGGCCUGCGCGCCGGGAGUGUGCGGAGGUGGCCCCGCAGGUGGCGGGGGAGCCGGCUUCAGAACUUGAUGAUGAUGUUCCAAAAGCAAACUGCCUCUCCACUGAAAGCACUGACACUCCGAAGGCCCCUGUCAUCACUCUUCCCUCAGAGGCAAGGGAACAAAUGGCCACCCUUGGAGAGAGGACGUUCAACUGUUGCUACCCAGGUUGCCACUUCAAAACUGUCCAUGGCAUGAAAGACUUGGACCGCCAUCUCAGAAUCCACACGGGAGACAAACCGCACAAGUGUGAGUUCUGUGACAAGUGCUUCAGCCGGAAGGACAACCUGACCAUGCACAUGCGGUGCCACACCAGUGUGAAGCCACACAAGUGUCACCUGUGUGACUACGCUGCCGUGGACAGCAGUAGCCUCAAGAAGCACCUGCGGAUCCACUCUGAUGAGCGGCCGUAC2000000006AAAUGCCAGCUCUGCCCCUAUGCCAGCCGCAACUCCAGCCAGCUCACCGUCCACCUGCGAUCUCACACGGGGGAUACCCCCUUCCAGUGCUGGCUCUGUAGCGCCAAGUUCAAAAUCAGCUCGG2000000006ACUUGAAAAGGCACAUGAUCGUGCACUCGGGGGAGAAGCCUUUCAAGUGCGAGUUCUGCGACGUCCGCUGCACCAUGAAGGCGAAUCUCAAAUCGCACA2000000009UCCGCAUCAAGCACACCUUCAAAUGUCUGCACUGUGCCUUCCAGGGCCGGG2000000006ACCGGGCUGACCUCCUGGAGCACAGCCGGCUGCACCAGGCCGACCACCCGGAGAAGUGUCCAGAGUGCAGCUACUCCUGCUCCAGCGCGGCCGCCCUGCGCGUGCACAGCAGAGUCCACUGUAAGG2000000006ACCGUCCCUUCAAGUGUGACUUCUGCAGCUUCGACACGAAGCGGCCCAGCAGCCUGGCCAAGCACGUCGACAAGGUGCACAGGG2000000006ACGAGGCCAAGACGGAGAACCGGGCCCCUCUGGGCAAGGAAGGGCUCAGAGAGGGCAGCUCCCAGCACGUGGCCAAGAUCGUGACGCAGAGGGCCUUCCGCUGUGAGACCUGCGGCGCCUCCUUCGUCAGGGAUGACUCUCUGAGAUGCCACAAGAAGCAGCACAGUGAUCAGAGUGAGAACAAGA2000000006ACUCAG2000000006ACUUGGUCACCUUCCCACCGGAAAGCGGUGCCUCGGG2000000006ACAGCUCAGCACCCUGGUCUCCGUGGGGCAGCUCGAGGCUCCCCUAGAGCCCAGCCAAGACCUCUAGCUCAGCCGAAGAGGGUGGUCAGCUGUCGGA2000000006ACUUCUGACCAGUGCUGUUGCCCAGCCCUCCAGAGGUGAGGCCACUGAGAG2000000006ACAGGCUUUGGGCACCACUUCUGGGGCUGGCCGCUCCAACUUCACAGGCCUUCAGAGGCGAUGGCUGGGCGACAGUGACGAAAGCAAAGCAAAGCAGGGCUGUGGAGACACUCCUCGCAUUUGUCUCUUCCCUCCAAGG2000000006AUUAUCUGAGCAAGUCGACUUGUUCAUUCAAAGGCGGGGUCUGCCAAGCCCUGCUCUAUCCAAUGGGGAUAGCUUCUACGUAACGG2000000006AUUCCAAUUUUAAA2000000006ACUGAUCCAUCUCUGAUGGAAUUAUUAAACUUAGACGAUAUAGAAAACUAAAACUAAUCUCUAGAGUGGAAAGGGUUAAAGUGAGGAAGGUGUACGUGAAGGGUCUGGGGUUGCUGGAAAACUUCUAUUUCAUAACCUGGGUGAUCGUUCUAAGAGUGUUUGCCUUAUAUGUUUGUGUGGUUUCUUUUACCUGUUGUCUUACAAUAAAAAAGGCAGACUCAUGGUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 259 909 1033 1132 1183 1309 1393 1579 1585 1622 1719 1770 1909 1995 2009
Modification Positions m6A m6A m6A Y m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 20:52105386:- 20:52088461:- 20:52085212:- 20:52085113:- 20:52085062:- 20:52084936:- 20:52084852:- 20:52084666:- 20:52084660:- 20:52084623:- 20:52084526:- 20:52084475:- 20:52084336:- 20:52084250:- 20:52084236:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
3kRDPWwiRCgi
L6w2k2VEv4EY
msuJfBpJvM5H
VyCX26p5UBRL
BkoLW2CBToyL
Lny8GcCeVGc9
BtsJQJ3DteUq
iezFbUdmY3A6
BtsJQJ3DteUq
iezFbUdmY3A6
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
D6ncpa2PPWj3
Lny8GcCeVGc9
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
BkoLW2CBToyL
Lny8GcCeVGc9
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
msuJfBpJvM5H
VyCX26p5UBRL
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
iezFbUdmY3A6