General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000377115
Gene ID:	ENSG00000125798
Gene Name:	FOXA2
Sequence (UNICHARACTER ENCODING)	GCUAGAGGGGCUGCUUGCGCCAGGCGCCGGCCGCCCCACUGCGGGUCCCUGGCGGCCGGUGUCUGAGGAGUCGGAGAGCCGAGGCGGCCAGACCGUGCGCCCCGCGCUUCUCCCGAGGCCGUUCCGGGUCUGAACUGUAACAGGGAGGGGCCUCGCAGGAGCAGCAGCGGGCGAGUUAAAGUAUGCUGGGAGCGGUGAAGAUGGAAGGGCACGAGCCGUCCGACUGGAGCAGCUACUAUGCAGAGCCCGAGGGCUACUCCUCCGUGAGCAACAUGAACGCCGGCCUGGGGAUGAACGGCAUGAACACGUACAUGAGCAUGUCGGCGGCCGCCAUGGGCAGCGGCUCGGGCAACAUGAGCGCGGGCUCCAUGAACAUGUCGUCGUACGUGGGCGCUGGCAUGAGCCCGUCCCUGGCGGGGAUGUCCCCCGGCGCGGGCGCCAUGGCGGGCAUGGGCGGCUCGGCCGGGGCGGCCGGCGUGGCGGGCAUGGGGCCGCACUUGAGUCCCAGCCUGAGCCCGCUCGGGGGGCAGGCGGCCGGGGCCAUGGGCGGCCUGGCCCCCUACGCCAACAUGAЖCUCCAUGAGCCCCAUGUACGGGCAGGCGGGCCUGAGCCGCGCCCGCGACCCCAAGЖCCUACAGGCGCAGCUACACGCACGCAAAGCCGCCCUACUCGUACAUCUCGCUCAUCACCAUGGCCAPCCAGCAGAGCCCCAACAAGAUGCUGACGCUGAGCGAGAUCUACCAGUGGAUCAUGGACCUCUUCCCCUUCUACCGGCAGAACCAGCAGCGCUGGCAGAACUCCAPCCGCCACUCGCUCUCCUUCAACGACUGUUUCCUGAAGGUGCCCCGCUCGCCCGACAAGCCCGGCAAGGGCUCCUUCUGGACCCUGCACCCUGACUCGGGCAACAUGUUCGAGAACGGCUGCUACCUGCGCCGCCAGAAGCGCUUCAAGUGCGAGAAGCAGCUGGCGCUGAAGGAGGCCGCAGGCGCCGCCGGCAGCGGCAAGAAGGCGGCCGCCGGAGCCCAGGCCUCACAGGCUCAACUCGGGGAGGCCGCCGGGCCGGCCUCCGAGЖCUCCGGCGGGCACCGAGUCGCCUCACUCGAGCGCCUCCCCGUGCCAGGAGCACAAGCGAGGGGGCCUGGGAGAGCUGAAGGGGACGCCGGCUGCGGCGCUGAGCCCCCCAGAGCCGGCGCCCUCUCCCGGGCAGCAGCAGCAGGCCGCGGCCCACCUGCUGGGCCCGCCCCACCACCCGGGCCUGCCGCCUGAGGCCCACCUGAAGCCGGAACACCACUACGCCUUCAACCACCCGUUCUCCAUCAACAACCUCAUGUCCUCGGAGCAGCAGCACCACCACAGCCACCACCACCACCAACCCCACAAAAUGGЖCCUCAAGGCCUACGAACAGGUGAUGCACUACCCCGGCUACGGUUCCCCCAUGCCUGGCAGCUUGGCCAUGGGCCCGGUCACGAACAAAACGGGCCUGGACGCCUCGCCCCUGGCCGCAGAUACCUCCUACUACCAGGGGGUGUACUCCCGGCCCAUUAUGAЖCUCCUCUUAAGAAGACGACGGCUUCAGGCCCGGCUAACUCUGGCACCCCGGAUCGAGGACAAGUGAGAGAGCAAGUGGGGGUCGAGЖCUUUGGGGAGACGGUGUUGCAGAGACGCAAGGGAGAAGAAAUCCAUAЖCACCCCCACCCCAACACCCCCAAGACAGCAGUCUUCUUCACCCGCUGCAGCCGUUCCGUCCCAAACAGAGGGCCACACAGAUACCCCACGUUCUAUAUAAGGAGGAAAACGGGAAAGAAUAUAAAGUUAAAAAAAAGCCPCCGGUUUCCACUACUGUGUAGЖCUCCUGCUUCUUCAAGCACCUGCAGAUUCUGAUUUUUUUGUUGUUGUUGUUCUCCUCCAUUGCUGUUGUUGCAGGGAAGUCUUACUUAAAAAAAAAAAAAAAUUUUGUGAGUGACUCGGUGUAAAACCAUGUAGUUUUAЖCAGAACCAGAGGGUUGUACUAUUGUUUAAAAACAGGAAAAAAAAUAAUGUAAGGGUCUGUUGUAAAUGACCAAGAAAAAGAAAAAAAAAGCAUUCCCAAUCUUGACACGGUGAAAUCCAGGUCUCGGGUCCGAUUAAUUUAUGGUUUCUGCGUGCUPUAUUUAUGGCUUAUAAAUGUGUAUUCUGGCUGCAAGGGCCAGAGUUCCACAAAUCUAUAUUAAAGUGUUAUACCCGGUUUUAUCCCUUGAAUCUUUUCUUCCAGAUUUUUCUUUUCUUUACUUGGCUUACAAAAUAUACAGGCUUGGAAAUUAUUUCAAGAAGGAGGGAGGGAUACCCUGUCUGGUUGCAGGUUGUAUUUUAUUUUGGCCCAGGGAGUGUUGCUGUUUUCCCAACAUUUUAUUAAUAAAAUUUUCAGACAU
Sequence (SHORT NAMES ENCODING)	GCUAGAGGGGCUGCUUGCGCCAGGCGCCGGCCGCCCCACUGCGGGUCCCUGGCGGCCGGUGUCUGAGGAGUCGGAGAGCCGAGGCGGCCAGACCGUGCGCCCCGCGCUUCUCCCGAGGCCGUUCCGGGUCUGAACUGUAACAGGGAGGGGCCUCGCAGGAGCAGCAGCGGGCGAGUUAAAGUAUGCUGGGAGCGGUGAAGAUGGAAGGGCACGAGCCGUCCGACUGGAGCAGCUACUAUGCAGAGCCCGAGGGCUACUCCUCCGUGAGCAACAUGAACGCCGGCCUGGGGAUGAACGGCAUGAACACGUACAUGAGCAUGUCGGCGGCCGCCAUGGGCAGCGGCUCGGGCAACAUGAGCGCGGGCUCCAUGAACAUGUCGUCGUACGUGGGCGCUGGCAUGAGCCCGUCCCUGGCGGGGAUGUCCCCCGGCGCGGGCGCCAUGGCGGGCAUGGGCGGCUCGGCCGGGGCGGCCGGCGUGGCGGGCAUGGGGCCGCACUUGAGUCCCAGCCUGAGCCCGCUCGGGGGGCAGGCGGCCGGGGCCAUGGGCGGCCUGGCCCCCUACGCCAACAUGAm6ACUCCAUGAGCCCCAUGUACGGGCAGGCGGGCCUGAGCCGCGCCCGCGACCCCAAGm6ACCUACAGGCGCAGCUACACGCACGCAAAGCCGCCCUACUCGUACAUCUCGCUCAUCACCAUGGCCAYCCAGCAGAGCCCCAACAAGAUGCUGACGCUGAGCGAGAUCUACCAGUGGAUCAUGGACCUCUUCCCCUUCUACCGGCAGAACCAGCAGCGCUGGCAGAACUCCAYCCGCCACUCGCUCUCCUUCAACGACUGUUUCCUGAAGGUGCCCCGCUCGCCCGACAAGCCCGGCAAGGGCUCCUUCUGGACCCUGCACCCUGACUCGGGCAACAUGUUCGAGAACGGCUGCUACCUGCGCCGCCAGAAGCGCUUCAAGUGCGAGAAGCAGCUGGCGCUGAAGGAGGCCGCAGGCGCCGCCGGCAGCGGCAAGAAGGCGGCCGCCGGAGCCCAGGCCUCACAGGCUCAACUCGGGGAGGCCGCCGGGCCGGCCUCCGAGm6ACUCCGGCGGGCACCGAGUCGCCUCACUCGAGCGCCUCCCCGUGCCAGGAGCACAAGCGAGGGGGCCUGGGAGAGCUGAAGGGGACGCCGGCUGCGGCGCUGAGCCCCCCAGAGCCGGCGCCCUCUCCCGGGCAGCAGCAGCAGGCCGCGGCCCACCUGCUGGGCCCGCCCCACCACCCGGGCCUGCCGCCUGAGGCCCACCUGAAGCCGGAACACCACUACGCCUUCAACCACCCGUUCUCCAUCAACAACCUCAUGUCCUCGGAGCAGCAGCACCACCACAGCCACCACCACCACCAACCCCACAAAAUGGm6ACCUCAAGGCCUACGAACAGGUGAUGCACUACCCCGGCUACGGUUCCCCCAUGCCUGGCAGCUUGGCCAUGGGCCCGGUCACGAACAAAACGGGCCUGGACGCCUCGCCCCUGGCCGCAGAUACCUCCUACUACCAGGGGGUGUACUCCCGGCCCAUUAUGAm6ACUCCUCUUAAGAAGACGACGGCUUCAGGCCCGGCUAACUCUGGCACCCCGGAUCGAGGACAAGUGAGAGAGCAAGUGGGGGUCGAGm6ACUUUGGGGAGACGGUGUUGCAGAGACGCAAGGGAGAAGAAAUCCAUAm6ACACCCCCACCCCAACACCCCCAAGACAGCAGUCUUCUUCACCCGCUGCAGCCGUUCCGUCCCAAACAGAGGGCCACACAGAUACCCCACGUUCUAUAUAAGGAGGAAAACGGGAAAGAAUAUAAAGUUAAAAAAAAGCCYCCGGUUUCCACUACUGUGUAGm6ACUCCUGCUUCUUCAAGCACCUGCAGAUUCUGAUUUUUUUGUUGUUGUUGUUCUCCUCCAUUGCUGUUGUUGCAGGGAAGUCUUACUUAAAAAAAAAAAAAAAUUUUGUGAGUGACUCGGUGUAAAACCAUGUAGUUUUAm6ACAGAACCAGAGGGUUGUACUAUUGUUUAAAAACAGGAAAAAAAAUAAUGUAAGGGUCUGUUGUAAAUGACCAAGAAAAAGAAAAAAAAAGCAUUCCCAAUCUUGACACGGUGAAAUCCAGGUCUCGGGUCCGAUUAAUUUAUGGUUUCUGCGUGCUYUAUUUAUGGCUUAUAAAUGUGUAUUCUGGCUGCAAGGGCCAGAGUUCCACAAAUCUAUAUUAAAGUGUUAUACCCGGUUUUAUCCCUUGAAUCUUUUCUUCCAGAUUUUUCUUUUCUUUACUUGGCUUACAAAAUAUACAGGCUUGGAAAUUAUUUCAAGAAGGAGGGAGGGAUACCCUGUCUGGUUGCAGGUUGUAUUUUAUUUUGGCCCAGGGAGUGUUGCUGUUUUCCCAACAUUUUAUUAAUAAAAUUUUCAGACAU
Sequence (MODOMICS CODE ENCODING)	GCUAGAGGGGCUGCUUGCGCCAGGCGCCGGCCGCCCCACUGCGGGUCCCUGGCGGCCGGUGUCUGAGGAGUCGGAGAGCCGAGGCGGCCAGACCGUGCGCCCCGCGCUUCUCCCGAGGCCGUUCCGGGUCUGAACUGUAACAGGGAGGGGCCUCGCAGGAGCAGCAGCGGGCGAGUUAAAGUAUGCUGGGAGCGGUGAAGAUGGAAGGGCACGAGCCGUCCGACUGGAGCAGCUACUAUGCAGAGCCCGAGGGCUACUCCUCCGUGAGCAACAUGAACGCCGGCCUGGGGAUGAACGGCAUGAACACGUACAUGAGCAUGUCGGCGGCCGCCAUGGGCAGCGGCUCGGGCAACAUGAGCGCGGGCUCCAUGAACAUGUCGUCGUACGUGGGCGCUGGCAUGAGCCCGUCCCUGGCGGGGAUGUCCCCCGGCGCGGGCGCCAUGGCGGGCAUGGGCGGCUCGGCCGGGGCGGCCGGCGUGGCGGGCAUGGGGCCGCACUUGAGUCCCAGCCUGAGCCCGCUCGGGGGGCAGGCGGCCGGGGCCAUGGGCGGCCUGGCCCCCUACGCCAACAUGA2000000006ACUCCAUGAGCCCCAUGUACGGGCAGGCGGGCCUGAGCCGCGCCCGCGACCCCAAG2000000006ACCUACAGGCGCAGCUACACGCACGCAAAGCCGCCCUACUCGUACAUCUCGCUCAUCACCAUGGCCA2000000009UCCAGCAGAGCCCCAACAAGAUGCUGACGCUGAGCGAGAUCUACCAGUGGAUCAUGGACCUCUUCCCCUUCUACCGGCAGAACCAGCAGCGCUGGCAGAACUCCA2000000009UCCGCCACUCGCUCUCCUUCAACGACUGUUUCCUGAAGGUGCCCCGCUCGCCCGACAAGCCCGGCAAGGGCUCCUUCUGGACCCUGCACCCUGACUCGGGCAACAUGUUCGAGAACGGCUGCUACCUGCGCCGCCAGAAGCGCUUCAAGUGCGAGAAGCAGCUGGCGCUGAAGGAGGCCGCAGGCGCCGCCGGCAGCGGCAAGAAGGCGGCCGCCGGAGCCCAGGCCUCACAGGCUCAACUCGGGGAGGCCGCCGGGCCGGCCUCCGAG2000000006ACUCCGGCGGGCACCGAGUCGCCUCACUCGAGCGCCUCCCCGUGCCAGGAGCACAAGCGAGGGGGCCUGGGAGAGCUGAAGGGGACGCCGGCUGCGGCGCUGAGCCCCCCAGAGCCGGCGCCCUCUCCCGGGCAGCAGCAGCAGGCCGCGGCCCACCUGCUGGGCCCGCCCCACCACCCGGGCCUGCCGCCUGAGGCCCACCUGAAGCCGGAACACCACUACGCCUUCAACCACCCGUUCUCCAUCAACAACCUCAUGUCCUCGGAGCAGCAGCACCACCACAGCCACCACCACCACCAACCCCACAAAAUGG2000000006ACCUCAAGGCCUACGAACAGGUGAUGCACUACCCCGGCUACGGUUCCCCCAUGCCUGGCAGCUUGGCCAUGGGCCCGGUCACGAACAAAACGGGCCUGGACGCCUCGCCCCUGGCCGCAGAUACCUCCUACUACCAGGGGGUGUACUCCCGGCCCAUUAUGA2000000006ACUCCUCUUAAGAAGACGACGGCUUCAGGCCCGGCUAACUCUGGCACCCCGGAUCGAGGACAAGUGAGAGAGCAAGUGGGGGUCGAG2000000006ACUUUGGGGAGACGGUGUUGCAGAGACGCAAGGGAGAAGAAAUCCAUA2000000006ACACCCCCACCCCAACACCCCCAAGACAGCAGUCUUCUUCACCCGCUGCAGCCGUUCCGUCCCAAACAGAGGGCCACACAGAUACCCCACGUUCUAUAUAAGGAGGAAAACGGGAAAGAAUAUAAAGUUAAAAAAAAGCC2000000009UCCGGUUUCCACUACUGUGUAG2000000006ACUCCUGCUUCUUCAAGCACCUGCAGAUUCUGAUUUUUUUGUUGUUGUUGUUCUCCUCCAUUGCUGUUGUUGCAGGGAAGUCUUACUUAAAAAAAAAAAAAAAUUUUGUGAGUGACUCGGUGUAAAACCAUGUAGUUUUA2000000006ACAGAACCAGAGGGUUGUACUAUUGUUUAAAAACAGGAAAAAAAAUAAUGUAAGGGUCUGUUGUAAAUGACCAAGAAAAAGAAAAAAAAAGCAUUCCCAAUCUUGACACGGUGAAAUCCAGGUCUCGGGUCCGAUUAAUUUAUGGUUUCUGCGUGCU2000000009UUAUUUAUGGCUUAUAAAUGUGUAUUCUGGCUGCAAGGGCCAGAGUUCCACAAAUCUAUAUUAAAGUGUUAUACCCGGUUUUAUCCCUUGAAUCUUUUCUUCCAGAUUUUUCUUUUCUUUACUUGGCUUACAAAAUAUACAGGCUUGGAAAUUAUUUCAAGAAGGAGGGAGGGAUACCCUGUCUGGUUGCAGGUUGUAUUUUAUUUUGGCCCAGGGAGUGUUGCUGUUUUCCCAACAUUUUAUUAAUAAAAUUUUCAGACAU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	574	630	697	802	1071	1384	1546	1633	1681	1821	1843	1983	2140
Modification Positions	m6A	m6A	Y	Y	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y
Genomic Coordinates	20:22582832:-	20:22582776:-	20:22582709:-	20:22582604:-	20:22582335:-	20:22582022:-	20:22581860:-	20:22581773:-	20:22581725:-	20:22581585:-	20:22581563:-	20:22581423:-	20:22581266:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	nfCHyrYzE6fB bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	nfCHyrYzE6fB bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr