General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000351817
Gene ID:	ENSG00000125816
Gene Name:	NKX2-4
Sequence (UNICHARACTER ENCODING)	GGGGCUCGCCGAGCCGCCGACUCCUCGUCACAGGCUCAGCUGCCGCGGCCGAGGUGGCGGCGACGAGCGGCCGCCGCGUCCUGCCGGCGCGCGCCCCAGGCCCCCCUACCUGGCUGCCCGCCGAGCCAUGUCGUUGAGCCCAAAGCACACGACGCCCUUCUCCGUGUCCGACAUCCUGAGCCCCAUCGAGGAGACCUACAAGAAGUUCAGCGGCGCCAUGGACGGCGCGCCACCCGGCCUGGGGGCGCCCCUGGGGGCCGCGGCCGCCUACCGCGCGCCGCCACCUGGGCCCUCCUCGCAGGCGGCGACCGUGGCGGGCAUGCAGCCUUCUCACGCCAUGGCGGGUCACAACGCGGCGGCCGCGGCGGCGGCGGCAGCAGCUGCGGCGGCGGCGGCCGCCACCUACCACAUGCCGCCCGGCGUCUCGCAGUUCCCGCACGGCGCCAUGGGCAGCUACUGCAACGGCGGCCUGGGCAACAUGGGCGAGCUGCCCGCCUACACGGЖCGGCAUGCGGGGCGGCGCGGCCACCGGCUGGUACGGCGCCAACCCGGACCCACGCUACUCGUCAAUCUCCAGGUUCAUGGGGCCGUCGGCGGGCGUGAAUGUGGCCGGCAUGGGGUCGCUGACCGGCAUCGCGGACGCCGCCAAGUCGCUGGGCCCGCUGCACGCGGCGGCGGCGGCAGCCGCUCCGCGAAGGAAGCGCCGCGUGCUCUUCUCGCAGGCGCAGGUCUACGAGCUGGAGCGGCGCUUCAAGCAGCAGAAGUACCUGUCGGCGCCCGAGCGCGAGCACCUGGCCAGCAUGAUCCACCUGACGCCCACGCAGGUCAAGAUCUGGUUCCAGAACCACCGGUACAAGAUGAAACGGCAGGCCAAGGЖCAAGGCGGCGCAGCAGCUGCAGCAGGAGGGCGGCCUGGGCCCGCCGCCGCCUCCGCCGCCGUCCCCGCGCCGCGUGGCGGUGCCUGUGCUGGUCAAGGЖCGGCAAGCCGUGCCAGAACGGCGCCAGCACGCCCACCCCCGGCCAGGCCGGUCCGCAGCCGCCGGCCCCGACGCCAGCACCUGAGCUGGAGGAGCUGUCGCCCAGCCCACCCGCGCUGCACGGCCCGGGGGGCGGCCUGGCGGCCCUGGЖCGCGGCCGCCGGGGAGUACAGCGGCGGCGUCCUGGGCGCCAACCUGCUCUAUGGCAGGACGUGGUGACAGCGAGGGCGCCCCGGGGCUAGGUCCUGGUGCACCCGAAGGGUCUGCAAGAAЖCUGCUAGAACGGAUGGGGGAGGCAUGCGAAAACCGACUCGCGCGUGUAAACUGCGAUUCAAAACGAACCGGUCUCAGAGAGGAGCAGGCUGUGAACCUCUUGCUGGGGGCGGGGGACAGCGACAGCCCGGAAACCGAGUAGUGUAACAUUAUGCCACGAGGCUUUGAGGUGGUGAUUUUCUCCPCCUAGAAGUUCUUAAAUGACGCGAAAAGGUGGAGAAGUUCACACGGCAUUCUUAЖCUACAGCUCUCAAAGUUGGAAACUUUGUUGGCGUUUGUAACUAUAAAAAUCAACCCAGCUPUAACAAUCAGUCCUUUUUGAAGUGGAAUUUAUCUUGGGAGAUUAAUUUUCGAAGGGCCCCCUAAGUGCAAUUUCAUUAAUGUUUGAUUGAAAGUAAAUUGAAGUGUAGCUCAAGGUGGAUCAUACACAUAGCAACAUUAUUGCAGAGGAAUUAUUGCCAUUUAGGUAAUAGAGCAAUGGAAUCAAAAUAAAA
Sequence (SHORT NAMES ENCODING)	GGGGCUCGCCGAGCCGCCGACUCCUCGUCACAGGCUCAGCUGCCGCGGCCGAGGUGGCGGCGACGAGCGGCCGCCGCGUCCUGCCGGCGCGCGCCCCAGGCCCCCCUACCUGGCUGCCCGCCGAGCCAUGUCGUUGAGCCCAAAGCACACGACGCCCUUCUCCGUGUCCGACAUCCUGAGCCCCAUCGAGGAGACCUACAAGAAGUUCAGCGGCGCCAUGGACGGCGCGCCACCCGGCCUGGGGGCGCCCCUGGGGGCCGCGGCCGCCUACCGCGCGCCGCCACCUGGGCCCUCCUCGCAGGCGGCGACCGUGGCGGGCAUGCAGCCUUCUCACGCCAUGGCGGGUCACAACGCGGCGGCCGCGGCGGCGGCGGCAGCAGCUGCGGCGGCGGCGGCCGCCACCUACCACAUGCCGCCCGGCGUCUCGCAGUUCCCGCACGGCGCCAUGGGCAGCUACUGCAACGGCGGCCUGGGCAACAUGGGCGAGCUGCCCGCCUACACGGm6ACGGCAUGCGGGGCGGCGCGGCCACCGGCUGGUACGGCGCCAACCCGGACCCACGCUACUCGUCAAUCUCCAGGUUCAUGGGGCCGUCGGCGGGCGUGAAUGUGGCCGGCAUGGGGUCGCUGACCGGCAUCGCGGACGCCGCCAAGUCGCUGGGCCCGCUGCACGCGGCGGCGGCGGCAGCCGCUCCGCGAAGGAAGCGCCGCGUGCUCUUCUCGCAGGCGCAGGUCUACGAGCUGGAGCGGCGCUUCAAGCAGCAGAAGUACCUGUCGGCGCCCGAGCGCGAGCACCUGGCCAGCAUGAUCCACCUGACGCCCACGCAGGUCAAGAUCUGGUUCCAGAACCACCGGUACAAGAUGAAACGGCAGGCCAAGGm6ACAAGGCGGCGCAGCAGCUGCAGCAGGAGGGCGGCCUGGGCCCGCCGCCGCCUCCGCCGCCGUCCCCGCGCCGCGUGGCGGUGCCUGUGCUGGUCAAGGm6ACGGCAAGCCGUGCCAGAACGGCGCCAGCACGCCCACCCCCGGCCAGGCCGGUCCGCAGCCGCCGGCCCCGACGCCAGCACCUGAGCUGGAGGAGCUGUCGCCCAGCCCACCCGCGCUGCACGGCCCGGGGGGCGGCCUGGCGGCCCUGGm6ACGCGGCCGCCGGGGAGUACAGCGGCGGCGUCCUGGGCGCCAACCUGCUCUAUGGCAGGACGUGGUGACAGCGAGGGCGCCCCGGGGCUAGGUCCUGGUGCACCCGAAGGGUCUGCAAGAAm6ACUGCUAGAACGGAUGGGGGAGGCAUGCGAAAACCGACUCGCGCGUGUAAACUGCGAUUCAAAACGAACCGGUCUCAGAGAGGAGCAGGCUGUGAACCUCUUGCUGGGGGCGGGGGACAGCGACAGCCCGGAAACCGAGUAGUGUAACAUUAUGCCACGAGGCUUUGAGGUGGUGAUUUUCUCCYCCUAGAAGUUCUUAAAUGACGCGAAAAGGUGGAGAAGUUCACACGGCAUUCUUAm6ACUACAGCUCUCAAAGUUGGAAACUUUGUUGGCGUUUGUAACUAUAAAAAUCAACCCAGCUYUAACAAUCAGUCCUUUUUGAAGUGGAAUUUAUCUUGGGAGAUUAAUUUUCGAAGGGCCCCCUAAGUGCAAUUUCAUUAAUGUUUGAUUGAAAGUAAAUUGAAGUGUAGCUCAAGGUGGAUCAUACACAUAGCAACAUUAUUGCAGAGGAAUUAUUGCCAUUUAGGUAAUAGAGCAAUGGAAUCAAAAUAAAA
Sequence (MODOMICS CODE ENCODING)	GGGGCUCGCCGAGCCGCCGACUCCUCGUCACAGGCUCAGCUGCCGCGGCCGAGGUGGCGGCGACGAGCGGCCGCCGCGUCCUGCCGGCGCGCGCCCCAGGCCCCCCUACCUGGCUGCCCGCCGAGCCAUGUCGUUGAGCCCAAAGCACACGACGCCCUUCUCCGUGUCCGACAUCCUGAGCCCCAUCGAGGAGACCUACAAGAAGUUCAGCGGCGCCAUGGACGGCGCGCCACCCGGCCUGGGGGCGCCCCUGGGGGCCGCGGCCGCCUACCGCGCGCCGCCACCUGGGCCCUCCUCGCAGGCGGCGACCGUGGCGGGCAUGCAGCCUUCUCACGCCAUGGCGGGUCACAACGCGGCGGCCGCGGCGGCGGCGGCAGCAGCUGCGGCGGCGGCGGCCGCCACCUACCACAUGCCGCCCGGCGUCUCGCAGUUCCCGCACGGCGCCAUGGGCAGCUACUGCAACGGCGGCCUGGGCAACAUGGGCGAGCUGCCCGCCUACACGG2000000006ACGGCAUGCGGGGCGGCGCGGCCACCGGCUGGUACGGCGCCAACCCGGACCCACGCUACUCGUCAAUCUCCAGGUUCAUGGGGCCGUCGGCGGGCGUGAAUGUGGCCGGCAUGGGGUCGCUGACCGGCAUCGCGGACGCCGCCAAGUCGCUGGGCCCGCUGCACGCGGCGGCGGCGGCAGCCGCUCCGCGAAGGAAGCGCCGCGUGCUCUUCUCGCAGGCGCAGGUCUACGAGCUGGAGCGGCGCUUCAAGCAGCAGAAGUACCUGUCGGCGCCCGAGCGCGAGCACCUGGCCAGCAUGAUCCACCUGACGCCCACGCAGGUCAAGAUCUGGUUCCAGAACCACCGGUACAAGAUGAAACGGCAGGCCAAGG2000000006ACAAGGCGGCGCAGCAGCUGCAGCAGGAGGGCGGCCUGGGCCCGCCGCCGCCUCCGCCGCCGUCCCCGCGCCGCGUGGCGGUGCCUGUGCUGGUCAAGG2000000006ACGGCAAGCCGUGCCAGAACGGCGCCAGCACGCCCACCCCCGGCCAGGCCGGUCCGCAGCCGCCGGCCCCGACGCCAGCACCUGAGCUGGAGGAGCUGUCGCCCAGCCCACCCGCGCUGCACGGCCCGGGGGGCGGCCUGGCGGCCCUGG2000000006ACGCGGCCGCCGGGGAGUACAGCGGCGGCGUCCUGGGCGCCAACCUGCUCUAUGGCAGGACGUGGUGACAGCGAGGGCGCCCCGGGGCUAGGUCCUGGUGCACCCGAAGGGUCUGCAAGAA2000000006ACUGCUAGAACGGAUGGGGGAGGCAUGCGAAAACCGACUCGCGCGUGUAAACUGCGAUUCAAAACGAACCGGUCUCAGAGAGGAGCAGGCUGUGAACCUCUUGCUGGGGGCGGGGGACAGCGACAGCCCGGAAACCGAGUAGUGUAACAUUAUGCCACGAGGCUUUGAGGUGGUGAUUUUCUCC2000000009UCCUAGAAGUUCUUAAAUGACGCGAAAAGGUGGAGAAGUUCACACGGCAUUCUUA2000000006ACUACAGCUCUCAAAGUUGGAAACUUUGUUGGCGUUUGUAACUAUAAAAAUCAACCCAGCU2000000009UUAACAAUCAGUCCUUUUUGAAGUGGAAUUUAUCUUGGGAGAUUAAUUUUCGAAGGGCCCCCUAAGUGCAAUUUCAUUAAUGUUUGAUUGAAAGUAAAUUGAAGUGUAGCUCAAGGUGGAUCAUACACAUAGCAACAUUAUUGCAGAGGAAUUAUUGCCAUUUAGGUAAUAGAGCAAUGGAAUCAAAAUAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	504	876	975	1125	1246	1430	1485	1546
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	Y
Genomic Coordinates	20:21397023:-	20:21396227:-	20:21396128:-	20:21395978:-	20:21395857:-	20:21395673:-	20:21395618:-	20:21395557:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL	msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8