Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000624666
Gene ID: ENSG00000124226
Gene Name: RNF114
Sequence (UNICHARACTER ENCODING) UGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCGUGACCCGCCCGCCUCAGCCUCCCAAAAUGCUGGGAUUAUAGGCAUGAGCCAUUGCACCCGGUCUCUUCAUCUUUAUUUAUGCAUGCAUAAUGUGGUUUUUGGUUUUGUUUUGUUUUUUUUCUGAGACAGGGUCUGGCUUUGUUGCCCGGGCUGGAGUGCAAUUGCGUGGUCUCAGCUCACUGAAACCUCUGCCUCCCAGGCUCAAACCAUCCUCCCACCUCAGCCUCUCAAGUAGCUGGGACUACAGGCAUGUGUCACCACGCCUGCCUAAUUUUUUUGUAUUUUCAGUAGAGACGAGUUUUGCAUGUUGCCCAUGCUGAUCUCGAACUCGGGAGCGUGAAGUGAUGGCCCACCUCAGCCUCCCUCAGGAUUACAGGUGUGAGCCACCGUACUCCGCCCAUGAUGGGCUUUUUGUUUGUUUUACUGUAUGCUUUUGCUUUUCUCCAUUUUCAAGAUUAGUGAUUGUACUGUUGGCAUGCCUCAGAAAAUGUUUUUCUUUCCUUUAUCUUCCCUCUUUUCUUCAAUUCUUAAAACUUUCUUUCUUUUUAGAAAACCUGUAAUGAAGCACUAUUCUCUGGGUUUUCUUCUCUUUCUGUUUUACUGUUGCACAGCCUAGAUUUUAUAUGAAAGGCUGGGCCGGGCGUGGUAGCUCACGCCUGUAAACCCAGCACUUUGGCAGGCUGAGGCAGGCAGAUCACUUGAGGUCAGGAGUUCGAGACCAGCCUGGCUAACGUGGUGAAACUCCAUCUCUACUAAAAAUAUGAAAAUUAGCUGGGCCUGAUGGCACACACCUGUAAUCCCAGCUACUCAGGAGGCUGAGGUGGGAGAAUCACUUGAACCCGGGAGGCGGAGGUUGCAGUGAGCCGAGAUGGUGCCACUGCACUUCAGUCUGGGCGACAGAGUGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAAGAGAAUUUAGAUUUUAAAGAUUAUUUCUCAGAGGCUGGUGAUAGAUACUUUAACCAGGGUUAGUGGCUUUUAUAUGUUUUACCUAAAGGAUCACUUUUCUCUGCUGCACAUAACAGAAUGUGGUUUUUGGCUUGCUGUAAGGAGACUAGUUUAAAUGCUAGUAUAGAAAACUUUUAAAAACAUCCUAGAUUUGGAGCUUGUCUGUGAGCAGACAGCCUAUCAUGAAUAGGAGCAAACCUCUAGGAGAGUUAUUUUAGAGUGGAAGUGGAUAUCCUGAUUUAGUCGAAUAAAAUAGCAGCCUUGGUAUUAAUGGGAAAUCUGCAAUAAUCAGGGUUUCAGCCCCAUCAGCGUAGUCAGGAGUUUGGUGAGAUUAUUUGCCAGGGUGGUGUAGGUCUAGUUUUCUUUGUGCCCUUGUUUGGGACUAUAUUUUGCCUGUUGCAAGGUCCUCACUAACUUAUGGGCUCUGAUUCUUCCUAUUUGAGUUCUUCCUGUCCAAGAUCCGGUCCCACGUGGCUACUUGUUCCAAAUACCAGAAUUACЖUCAUGGAAGGUGUGAAGGCCACCAUUAAGGAUGCAUCUCUUCAGCCAAGGAAUGUUCCAAACCGUUACACCUUUCCUUGUCCUUACUGUCCUGAGAAGAACUUUGAUCAGGAAGGACUUGUGGAACACUGCAAAUUAUUCCAUAGCACGGAUACCAAAUCUGUGGUUUGUCCGAUAUGUGCCUCGAUGCCCUGGGGAGЖCCCCAACUACCGCAGCGCCAACUUCAGAGAGCACAPCCAGCGCCGGCACCGGUUUUCUUAUGACACUUUUGUGGAUUAUGAUGUUGAUGAAGAGGЖCAUGAUGAAUCAGGUGUUGCAGCGCUCCAUCAUCGACCAGUGAGCAGAGUCCGUGCUUGCUAUCUGUCUCAUGUUACAGAGCUUCCAUUACAUAUUAAACGUGAAAUCUAUGACUCCUGUACCUUACCUGUUCAACAGЖCCUGAAAAUGAGCCAUGGCAUUGGGACAGGGUCACUUCUGACAGGGGAAGUGGGUCCCCAGGU
Sequence (SHORT NAMES ENCODING) UGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCGUGACCCGCCCGCCUCAGCCUCCCAAAAUGCUGGGAUUAUAGGCAUGAGCCAUUGCACCCGGUCUCUUCAUCUUUAUUUAUGCAUGCAUAAUGUGGUUUUUGGUUUUGUUUUGUUUUUUUUCUGAGACAGGGUCUGGCUUUGUUGCCCGGGCUGGAGUGCAAUUGCGUGGUCUCAGCUCACUGAAACCUCUGCCUCCCAGGCUCAAACCAUCCUCCCACCUCAGCCUCUCAAGUAGCUGGGACUACAGGCAUGUGUCACCACGCCUGCCUAAUUUUUUUGUAUUUUCAGUAGAGACGAGUUUUGCAUGUUGCCCAUGCUGAUCUCGAACUCGGGAGCGUGAAGUGAUGGCCCACCUCAGCCUCCCUCAGGAUUACAGGUGUGAGCCACCGUACUCCGCCCAUGAUGGGCUUUUUGUUUGUUUUACUGUAUGCUUUUGCUUUUCUCCAUUUUCAAGAUUAGUGAUUGUACUGUUGGCAUGCCUCAGAAAAUGUUUUUCUUUCCUUUAUCUUCCCUCUUUUCUUCAAUUCUUAAAACUUUCUUUCUUUUUAGAAAACCUGUAAUGAAGCACUAUUCUCUGGGUUUUCUUCUCUUUCUGUUUUACUGUUGCACAGCCUAGAUUUUAUAUGAAAGGCUGGGCCGGGCGUGGUAGCUCACGCCUGUAAACCCAGCACUUUGGCAGGCUGAGGCAGGCAGAUCACUUGAGGUCAGGAGUUCGAGACCAGCCUGGCUAACGUGGUGAAACUCCAUCUCUACUAAAAAUAUGAAAAUUAGCUGGGCCUGAUGGCACACACCUGUAAUCCCAGCUACUCAGGAGGCUGAGGUGGGAGAAUCACUUGAACCCGGGAGGCGGAGGUUGCAGUGAGCCGAGAUGGUGCCACUGCACUUCAGUCUGGGCGACAGAGUGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAAGAGAAUUUAGAUUUUAAAGAUUAUUUCUCAGAGGCUGGUGAUAGAUACUUUAACCAGGGUUAGUGGCUUUUAUAUGUUUUACCUAAAGGAUCACUUUUCUCUGCUGCACAUAACAGAAUGUGGUUUUUGGCUUGCUGUAAGGAGACUAGUUUAAAUGCUAGUAUAGAAAACUUUUAAAAACAUCCUAGAUUUGGAGCUUGUCUGUGAGCAGACAGCCUAUCAUGAAUAGGAGCAAACCUCUAGGAGAGUUAUUUUAGAGUGGAAGUGGAUAUCCUGAUUUAGUCGAAUAAAAUAGCAGCCUUGGUAUUAAUGGGAAAUCUGCAAUAAUCAGGGUUUCAGCCCCAUCAGCGUAGUCAGGAGUUUGGUGAGAUUAUUUGCCAGGGUGGUGUAGGUCUAGUUUUCUUUGUGCCCUUGUUUGGGACUAUAUUUUGCCUGUUGCAAGGUCCUCACUAACUUAUGGGCUCUGAUUCUUCCUAUUUGAGUUCUUCCUGUCCAAGAUCCGGUCCCACGUGGCUACUUGUUCCAAAUACCAGAAUUACm6AUCAUGGAAGGUGUGAAGGCCACCAUUAAGGAUGCAUCUCUUCAGCCAAGGAAUGUUCCAAACCGUUACACCUUUCCUUGUCCUUACUGUCCUGAGAAGAACUUUGAUCAGGAAGGACUUGUGGAACACUGCAAAUUAUUCCAUAGCACGGAUACCAAAUCUGUGGUUUGUCCGAUAUGUGCCUCGAUGCCCUGGGGAGm6ACCCCAACUACCGCAGCGCCAACUUCAGAGAGCACAYCCAGCGCCGGCACCGGUUUUCUUAUGACACUUUUGUGGAUUAUGAUGUUGAUGAAGAGGm6ACAUGAUGAAUCAGGUGUUGCAGCGCUCCAUCAUCGACCAGUGAGCAGAGUCCGUGCUUGCUAUCUGUCUCAUGUUACAGAGCUUCCAUUACAUAUUAAACGUGAAAUCUAUGACUCCUGUACCUUACCUGUUCAACAGm6ACCUGAAAAUGAGCCAUGGCAUUGGGACAGGGUCACUUCUGACAGGGGAAGUGGGUCCCCAGGU
Sequence (MODOMICS CODE ENCODING) UGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCGUGACCCGCCCGCCUCAGCCUCCCAAAAUGCUGGGAUUAUAGGCAUGAGCCAUUGCACCCGGUCUCUUCAUCUUUAUUUAUGCAUGCAUAAUGUGGUUUUUGGUUUUGUUUUGUUUUUUUUCUGAGACAGGGUCUGGCUUUGUUGCCCGGGCUGGAGUGCAAUUGCGUGGUCUCAGCUCACUGAAACCUCUGCCUCCCAGGCUCAAACCAUCCUCCCACCUCAGCCUCUCAAGUAGCUGGGACUACAGGCAUGUGUCACCACGCCUGCCUAAUUUUUUUGUAUUUUCAGUAGAGACGAGUUUUGCAUGUUGCCCAUGCUGAUCUCGAACUCGGGAGCGUGAAGUGAUGGCCCACCUCAGCCUCCCUCAGGAUUACAGGUGUGAGCCACCGUACUCCGCCCAUGAUGGGCUUUUUGUUUGUUUUACUGUAUGCUUUUGCUUUUCUCCAUUUUCAAGAUUAGUGAUUGUACUGUUGGCAUGCCUCAGAAAAUGUUUUUCUUUCCUUUAUCUUCCCUCUUUUCUUCAAUUCUUAAAACUUUCUUUCUUUUUAGAAAACCUGUAAUGAAGCACUAUUCUCUGGGUUUUCUUCUCUUUCUGUUUUACUGUUGCACAGCCUAGAUUUUAUAUGAAAGGCUGGGCCGGGCGUGGUAGCUCACGCCUGUAAACCCAGCACUUUGGCAGGCUGAGGCAGGCAGAUCACUUGAGGUCAGGAGUUCGAGACCAGCCUGGCUAACGUGGUGAAACUCCAUCUCUACUAAAAAUAUGAAAAUUAGCUGGGCCUGAUGGCACACACCUGUAAUCCCAGCUACUCAGGAGGCUGAGGUGGGAGAAUCACUUGAACCCGGGAGGCGGAGGUUGCAGUGAGCCGAGAUGGUGCCACUGCACUUCAGUCUGGGCGACAGAGUGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAAGAGAAUUUAGAUUUUAAAGAUUAUUUCUCAGAGGCUGGUGAUAGAUACUUUAACCAGGGUUAGUGGCUUUUAUAUGUUUUACCUAAAGGAUCACUUUUCUCUGCUGCACAUAACAGAAUGUGGUUUUUGGCUUGCUGUAAGGAGACUAGUUUAAAUGCUAGUAUAGAAAACUUUUAAAAACAUCCUAGAUUUGGAGCUUGUCUGUGAGCAGACAGCCUAUCAUGAAUAGGAGCAAACCUCUAGGAGAGUUAUUUUAGAGUGGAAGUGGAUAUCCUGAUUUAGUCGAAUAAAAUAGCAGCCUUGGUAUUAAUGGGAAAUCUGCAAUAAUCAGGGUUUCAGCCCCAUCAGCGUAGUCAGGAGUUUGGUGAGAUUAUUUGCCAGGGUGGUGUAGGUCUAGUUUUCUUUGUGCCCUUGUUUGGGACUAUAUUUUGCCUGUUGCAAGGUCCUCACUAACUUAUGGGCUCUGAUUCUUCCUAUUUGAGUUCUUCCUGUCCAAGAUCCGGUCCCACGUGGCUACUUGUUCCAAAUACCAGAAUUAC2000000006AUCAUGGAAGGUGUGAAGGCCACCAUUAAGGAUGCAUCUCUUCAGCCAAGGAAUGUUCCAAACCGUUACACCUUUCCUUGUCCUUACUGUCCUGAGAAGAACUUUGAUCAGGAAGGACUUGUGGAACACUGCAAAUUAUUCCAUAGCACGGAUACCAAAUCUGUGGUUUGUCCGAUAUGUGCCUCGAUGCCCUGGGGAG2000000006ACCCCAACUACCGCAGCGCCAACUUCAGAGAGCACA2000000009UCCAGCGCCGGCACCGGUUUUCUUAUGACACUUUUGUGGAUUAUGAUGUUGAUGAAGAGG2000000006ACAUGAUGAAUCAGGUGUUGCAGCGCUCCAUCAUCGACCAGUGAGCAGAGUCCGUGCUUGCUAUCUGUCUCAUGUUACAGAGCUUCCAUUACAUAUUAAACGUGAAAUCUAUGACUCCUGUACCUUACCUGUUCAACAG2000000006ACCUGAAAAUGAGCCAUGGCAUUGGGACAGGGUCACUUCUGACAGGGGAAGUGGGUCCCCAGGU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1509 1708 1744 1804 1943
Modification Positions m6A m6A Y m6A m6A
Genomic Coordinates 20:49945439:+ 20:49949282:+ 20:49949318:+ 20:49952098:+ 20:49952237:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
msuJfBpJvM5H
Q36pf44ZRvxu
QmcpiJ88DBDn
D6ncpa2PPWj3
ArijeGVTwYBw
BkoLW2CBToyL
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8