Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000298630
Gene ID: ENSG00000165752
Gene Name: STK32C
Sequence (UNICHARACTER ENCODING) AGAAGAGCGCACGGCGGGCGCUGCCGGCCCCGAGCGCUCCCGCUACCACUGCCGCUCCCGGCCCUGCCGGCCGGCCAUGCCCCGAGUUCCGGCUGCCGCGCGCACCCAGACCCGGCGAUGAGGAGUGGCGCCGAGCGCAGGGGCAGCAGCGCCGCGGCGUCCCCGGGCUCGCCGCCCCCCGGCCGCGCGCGCCCCGCCGGCUCCGACGCGCCCUCGGCCCUGCCGCCGCCCGCUGCUGGCCAGCCCCGGGCCCGGGACUCGGGCGAUGUCCGCUCGCAGCCGCGCCCCCUGUUUCAGUGGAGCAAGUGGAAGAAGAGGAUGGGCUCGUCCAUGUCGGCGGCCACCGCGCGGAGGCCGGUGUUUGACGACAAGGAGGACGUGAACUUCGACCACUUCCAGAUCCUUCGGGCCAUUGGGAAGGGCAGCUUUGGCAAGGUGUGCAUUGUGCAGAAGCGGGACACGGAGAAGAUGUACGCCAUGAAGUACAUGAACAAGCAGCAGUGCAUCGAGCGCGACGAGGUCCGCAACGUCUUCCGGGAGCUGGAGAUCCUG?AGGAGAUCGAGCACGUCUUCCUGGUGAACCUCUGGUACUCCUUCCAGGACGAGGAGGACAUGUUCAUGGUCGUGGACCUGCUACUGGGCGGGGACCUGCGCUACCACCUGCAGCAGAACGUGCAGUUCUCCGAGGACACGGUGAGGCUGUACAUCUGCGAGAUGGCACUGGCUCUGGACUACCUGCGCGGCCAGCACAUCAUCCACAGAGAUGUCAAGCCUGACAACAUUCUCCUGGAUGAGAGAGGACAUGCACACCUGACCGACUUCAACAUUGCCACCAUCAUCAAGGACGGGGAGCGGGCGACGGCAUUAGCAGGCACCAAGCCGUACAUGGCUCCGGAGAUCUUCCACUCUUUUGUCAACGGCGGGACCGGCUACUCCUUCGAGGUGGACUGGUGGUCGGUGGGGGUGAUGGCCUAUGAGCUGCUGCGAGGAUGGAGGCCCUAUGACAPCCACUCCAGCAACGCCGUGGAGUCCCUGGUGCAGCUGUUCAGCACCGUGAGCGUCCAGUAUGUCCCCACGUGGUCCAAGGAGAUGGUGGCCUUGCUGCGGAAGCUCCUCACUGUGAACCCCGAGCACCGGCUCUCCAGCCUCCAGGACGUGCAGGCAGCCCCGGCGCUGGCCGGCGUGCUGUGGGACCACCUGAGCGAGAAGAGGGUGGAGCCGGGCUUCGUGCCCAACAAAGGCCGUCUGCACUGCGACCCCACCUUUGAGCUGGAGGAGAUGAUCCUGGAGUCCAGGCCCCUGCACAAGAAGAAGAAGCGUCUGGCCAAGAЖCAAGUCCCGGGACAACAGCAGGGACAGCUCCCAGUCCGAGAAUGACUAUCUUCAAGACUGCCUCGAUGCCAPCCAGCAAGACUUCGUGAUUUUUAACAGAGAAAAGCUGAAGAGGAGCCAGGACCUCCCGAGGGAGCCUCUCCCCGCCCCUGAGUCCAGGGAUGCUGCGGAGCCUGUGGAGGACGAGGCGGAACGCUCCGCCCUGCCCAUGUGCGGCCCCAUUUGCCCCUCGGCCGGGAGCGGCUAGGCCGGGACGCCCGUGGUCCUCACCCCUUGAGCUGCUUUGGAGACUCGGCUGCCAGAGGGAGGGCCAUGGGCCGAGGCCUGGCAUUCACGUUCCCACCCAGCCUGGCUGGCGGUGCCCACAGUGCCCCGGЖCACAUUUCACACCUCAGGCUCGUGGUGGUGCAGGGGЖCAAGAGGCUGUGGGUGCAGGGGACACCUGUGGAGGGCAUUUCCCGUGGGCCCCCGAGACCCGCCUAGAUGGAGGAAGCGCUGCUGGGCGCCCUCUUACCGCUCACGGGGAGCUGGGGCCAUGGAUGGGACAGGAGUCUUUGUCCCUGCUCAGCCCGGAGGCUGUGCACGGCCCUCGUCACAAGGUGACCCUUGCAGCACAGGCCGCGGGUGCCCCAGGCUCGGCUCAGGUCUUGGAGGUCAAGGGCAUGGGUUGGGGUAGUGGGUGGGGAGGUGAAUGUUUUCUAGAGAUUCAAACUGCUCCAGCAAUUUCUGUAGUUUUCACCUCUGAGAAUUACAAUGUGAGAACCGCU
Sequence (SHORT NAMES ENCODING) AGAAGAGCGCACGGCGGGCGCUGCCGGCCCCGAGCGCUCCCGCUACCACUGCCGCUCCCGGCCCUGCCGGCCGGCCAUGCCCCGAGUUCCGGCUGCCGCGCGCACCCAGACCCGGCGAUGAGGAGUGGCGCCGAGCGCAGGGGCAGCAGCGCCGCGGCGUCCCCGGGCUCGCCGCCCCCCGGCCGCGCGCGCCCCGCCGGCUCCGACGCGCCCUCGGCCCUGCCGCCGCCCGCUGCUGGCCAGCCCCGGGCCCGGGACUCGGGCGAUGUCCGCUCGCAGCCGCGCCCCCUGUUUCAGUGGAGCAAGUGGAAGAAGAGGAUGGGCUCGUCCAUGUCGGCGGCCACCGCGCGGAGGCCGGUGUUUGACGACAAGGAGGACGUGAACUUCGACCACUUCCAGAUCCUUCGGGCCAUUGGGAAGGGCAGCUUUGGCAAGGUGUGCAUUGUGCAGAAGCGGGACACGGAGAAGAUGUACGCCAUGAAGUACAUGAACAAGCAGCAGUGCAUCGAGCGCGACGAGGUCCGCAACGUCUUCCGGGAGCUGGAGAUCCUGm5CAGGAGAUCGAGCACGUCUUCCUGGUGAACCUCUGGUACUCCUUCCAGGACGAGGAGGACAUGUUCAUGGUCGUGGACCUGCUACUGGGCGGGGACCUGCGCUACCACCUGCAGCAGAACGUGCAGUUCUCCGAGGACACGGUGAGGCUGUACAUCUGCGAGAUGGCACUGGCUCUGGACUACCUGCGCGGCCAGCACAUCAUCCACAGAGAUGUCAAGCCUGACAACAUUCUCCUGGAUGAGAGAGGACAUGCACACCUGACCGACUUCAACAUUGCCACCAUCAUCAAGGACGGGGAGCGGGCGACGGCAUUAGCAGGCACCAAGCCGUACAUGGCUCCGGAGAUCUUCCACUCUUUUGUCAACGGCGGGACCGGCUACUCCUUCGAGGUGGACUGGUGGUCGGUGGGGGUGAUGGCCUAUGAGCUGCUGCGAGGAUGGAGGCCCUAUGACAYCCACUCCAGCAACGCCGUGGAGUCCCUGGUGCAGCUGUUCAGCACCGUGAGCGUCCAGUAUGUCCCCACGUGGUCCAAGGAGAUGGUGGCCUUGCUGCGGAAGCUCCUCACUGUGAACCCCGAGCACCGGCUCUCCAGCCUCCAGGACGUGCAGGCAGCCCCGGCGCUGGCCGGCGUGCUGUGGGACCACCUGAGCGAGAAGAGGGUGGAGCCGGGCUUCGUGCCCAACAAAGGCCGUCUGCACUGCGACCCCACCUUUGAGCUGGAGGAGAUGAUCCUGGAGUCCAGGCCCCUGCACAAGAAGAAGAAGCGUCUGGCCAAGAm6ACAAGUCCCGGGACAACAGCAGGGACAGCUCCCAGUCCGAGAAUGACUAUCUUCAAGACUGCCUCGAUGCCAYCCAGCAAGACUUCGUGAUUUUUAACAGAGAAAAGCUGAAGAGGAGCCAGGACCUCCCGAGGGAGCCUCUCCCCGCCCCUGAGUCCAGGGAUGCUGCGGAGCCUGUGGAGGACGAGGCGGAACGCUCCGCCCUGCCCAUGUGCGGCCCCAUUUGCCCCUCGGCCGGGAGCGGCUAGGCCGGGACGCCCGUGGUCCUCACCCCUUGAGCUGCUUUGGAGACUCGGCUGCCAGAGGGAGGGCCAUGGGCCGAGGCCUGGCAUUCACGUUCCCACCCAGCCUGGCUGGCGGUGCCCACAGUGCCCCGGm6ACACAUUUCACACCUCAGGCUCGUGGUGGUGCAGGGGm6ACAAGAGGCUGUGGGUGCAGGGGACACCUGUGGAGGGCAUUUCCCGUGGGCCCCCGAGACCCGCCUAGAUGGAGGAAGCGCUGCUGGGCGCCCUCUUACCGCUCACGGGGAGCUGGGGCCAUGGAUGGGACAGGAGUCUUUGUCCCUGCUCAGCCCGGAGGCUGUGCACGGCCCUCGUCACAAGGUGACCCUUGCAGCACAGGCCGCGGGUGCCCCAGGCUCGGCUCAGGUCUUGGAGGUCAAGGGCAUGGGUUGGGGUAGUGGGUGGGGAGGUGAAUGUUUUCUAGAGAUUCAAACUGCUCCAGCAAUUUCUGUAGUUUUCACCUCUGAGAAUUACAAUGUGAGAACCGCU
Sequence (MODOMICS CODE ENCODING) AGAAGAGCGCACGGCGGGCGCUGCCGGCCCCGAGCGCUCCCGCUACCACUGCCGCUCCCGGCCCUGCCGGCCGGCCAUGCCCCGAGUUCCGGCUGCCGCGCGCACCCAGACCCGGCGAUGAGGAGUGGCGCCGAGCGCAGGGGCAGCAGCGCCGCGGCGUCCCCGGGCUCGCCGCCCCCCGGCCGCGCGCGCCCCGCCGGCUCCGACGCGCCCUCGGCCCUGCCGCCGCCCGCUGCUGGCCAGCCCCGGGCCCGGGACUCGGGCGAUGUCCGCUCGCAGCCGCGCCCCCUGUUUCAGUGGAGCAAGUGGAAGAAGAGGAUGGGCUCGUCCAUGUCGGCGGCCACCGCGCGGAGGCCGGUGUUUGACGACAAGGAGGACGUGAACUUCGACCACUUCCAGAUCCUUCGGGCCAUUGGGAAGGGCAGCUUUGGCAAGGUGUGCAUUGUGCAGAAGCGGGACACGGAGAAGAUGUACGCCAUGAAGUACAUGAACAAGCAGCAGUGCAUCGAGCGCGACGAGGUCCGCAACGUCUUCCGGGAGCUGGAGAUCCUG2000000005CAGGAGAUCGAGCACGUCUUCCUGGUGAACCUCUGGUACUCCUUCCAGGACGAGGAGGACAUGUUCAUGGUCGUGGACCUGCUACUGGGCGGGGACCUGCGCUACCACCUGCAGCAGAACGUGCAGUUCUCCGAGGACACGGUGAGGCUGUACAUCUGCGAGAUGGCACUGGCUCUGGACUACCUGCGCGGCCAGCACAUCAUCCACAGAGAUGUCAAGCCUGACAACAUUCUCCUGGAUGAGAGAGGACAUGCACACCUGACCGACUUCAACAUUGCCACCAUCAUCAAGGACGGGGAGCGGGCGACGGCAUUAGCAGGCACCAAGCCGUACAUGGCUCCGGAGAUCUUCCACUCUUUUGUCAACGGCGGGACCGGCUACUCCUUCGAGGUGGACUGGUGGUCGGUGGGGGUGAUGGCCUAUGAGCUGCUGCGAGGAUGGAGGCCCUAUGACA2000000009UCCACUCCAGCAACGCCGUGGAGUCCCUGGUGCAGCUGUUCAGCACCGUGAGCGUCCAGUAUGUCCCCACGUGGUCCAAGGAGAUGGUGGCCUUGCUGCGGAAGCUCCUCACUGUGAACCCCGAGCACCGGCUCUCCAGCCUCCAGGACGUGCAGGCAGCCCCGGCGCUGGCCGGCGUGCUGUGGGACCACCUGAGCGAGAAGAGGGUGGAGCCGGGCUUCGUGCCCAACAAAGGCCGUCUGCACUGCGACCCCACCUUUGAGCUGGAGGAGAUGAUCCUGGAGUCCAGGCCCCUGCACAAGAAGAAGAAGCGUCUGGCCAAGA2000000006ACAAGUCCCGGGACAACAGCAGGGACAGCUCCCAGUCCGAGAAUGACUAUCUUCAAGACUGCCUCGAUGCCA2000000009UCCAGCAAGACUUCGUGAUUUUUAACAGAGAAAAGCUGAAGAGGAGCCAGGACCUCCCGAGGGAGCCUCUCCCCGCCCCUGAGUCCAGGGAUGCUGCGGAGCCUGUGGAGGACGAGGCGGAACGCUCCGCCCUGCCCAUGUGCGGCCCCAUUUGCCCCUCGGCCGGGAGCGGCUAGGCCGGGACGCCCGUGGUCCUCACCCCUUGAGCUGCUUUGGAGACUCGGCUGCCAGAGGGAGGGCCAUGGGCCGAGGCCUGGCAUUCACGUUCCCACCCAGCCUGGCUGGCGGUGCCCACAGUGCCCCGG2000000006ACACAUUUCACACCUCAGGCUCGUGGUGGUGCAGGGG2000000006ACAAGAGGCUGUGGGUGCAGGGGACACCUGUGGAGGGCAUUUCCCGUGGGCCCCCGAGACCCGCCUAGAUGGAGGAAGCGCUGCUGGGCGCCCUCUUACCGCUCACGGGGAGCUGGGGCCAUGGAUGGGACAGGAGUCUUUGUCCCUGCUCAGCCCGGAGGCUGUGCACGGCCCUCGUCACAAGGUGACCCUUGCAGCACAGGCCGCGGGUGCCCCAGGCUCGGCUCAGGUCUUGGAGGUCAAGGGCAUGGGUUGGGGUAGUGGGUGGGGAGGUGAAUGUUUUCUAGAGAUUCAAACUGCUCCAGCAAUUUCUGUAGUUUUCACCUCUGAGAAUUACAAUGUGAGAACCGCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 553 1007 1331 1403 1708 1745
Modification Positions m5C Y m6A Y m6A m6A
Genomic Coordinates 10:132228011:- 10:132224510:- 10:132222678:- 10:132209067:- 10:132207880:- 10:132207843:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs Er3yHVFp6tX8
KyXZuxKVckYS
4Hod8ruppnD2
5tjPWDS39J3i
9De2LACts9mj
BnpqjwVeTStU
bvmqLAbo2zqf
mNhhJTdKpjtR
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8