General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000378825
Gene ID:	ENSG00000151468
Gene Name:	CCDC3
Sequence (UNICHARACTER ENCODING)	AUGCCGAGCCCCGUGGCGGAGACAGCGGUGCGCUCAGCUCCCGGGAGCGGCCCGAGCAGCCGAGCGCCCAGGGCUGCCCUUCCCGGGCCGGCGGGCUCCCCGGGCUCCCCGCCGCCGCCCCGUGCGCCCCGGGAGGGCCCGGCAUGCUGCGCCAGCUGCUGCUCGCCGCGCUCUGCCUGGCGGGUCCCCCAGCGCCCGCGCGCGCCUGCCAGCUGCCCUCCGAGUGGAGGCCCCUGAGCGAGGGCUGCCGCGCCGAGCUGGCCGAGACCAUCGUGUACGCCAGGGUGCUGGCGCUGCACCCCGAGGCGCCCGGCCUCUACAACCACCUGCCCUGGCAGUACCACGCCGGCCAGGGGGGCCUCUUCUACUCGGCCGAGGUCGAGAUGCUGUGCGACCAGGCGUGGGGCAGCAUGCUGGAGGUGCCCGCCGGCUCCAGGCUCAACCUCACCGGCCUGGGCUACUUCUCGUGCCACUCCCACACCGUGGUCCAGGACUACUCCUAUUUCUUCUUCCUCAGGAUGGAUGAAAAUUAUAACCUCUUGCCUCACGGAGUCAAUUUCCAAGAUGCCAUCUUCCCAGACACUCAAGAGAACAGAAGGAUGUUUUCUAGCCUUUUCCAGUUUUCAAACUGUUCGCAAGGGCAGCAGCUGGCGACUUUCUCCAGUGACUGGGAAAUCCAGGAAGACAGUAGGCUCAUGUGCUCCUCGGUGCAGAAGGCCUUGUUUGAGGAGGAGGACCACGUCAAGAAACUGCAGCAGAAAGUGGCCACCCUGGAGAAGCGCAACCGGCAGCUCCGGGAGCGAGUGAAGAAGGUCAAGAGGUCCUUGCGGCAGGCGCGUAAGAAGGGCCGCCACCUGGAGCUGGCGAACCAGAAЖCUCAGUGAGAAGCUGGCGGCGGGCGCGCUGCCGCACAUCAAUGCCCGGGGGCCCGUGCGCCCCCCCUACCUGCGGGGGUAACGGGCCUGGGGGCUGCCAGGUGUGCAGGGCCAAUCCUGACGGUAAUUGAGAAUGAGUGAGGUUUCGUACAUGCAGCUAUUUCAAGGGUUGUAAGAGUUUUUGUUUUUAAUCACGCAUUUGGUAGAGUCUAAAUGGAUAAAAUGCAAGGCUUGCUUUCCCCUUGGGUGCUGGCCUCAAUGUCAGACCCCACGCGCUGCCCCUUCCUGGCCUGACCCCAGACGCAGUGCCUGGCAGUCCAGAGGCAGUGGGAUCCCUGAGUGCUGAAUGCUCGCCUGCAGAGCAGCCCAGAAAGAGCCCUGACUGGGGAGAGAACAUUUUAGAAUCUCUAGUGUAAAAGACAUCAACGUGCUUAGCCUPUAUUUCAGAAAAAAAUCAGGGUGGUUCCCAGCUCCCCAGUCCAGGACAACCAUUAGUCCUGAUGAGUGAGCUGACGCUGGUGCUGGAACCUGCUGGCACCUCACUGGCCACAUCUUUGGAAGGGGAUGGUGGCCUUGCAPCCAAGAUGCCUGAAAAUCAGCACGUGCAGGGCCUCCCUAUCCAGCCAGCAUUUUCCUUCCAGCUGAGGCAGGUGAAGACUUCAUAAGCUCAUCACAGGGGAGGGAAUUAGGAGCAGGGCAGCAGGUAAUUAAACAAGAUAAAUUAUACCUGAUUUCCAACACCAGCUACAAAGAGUUGAAGAUGAUACCUAUGGGUCGCGUUAACACAGGGGGCAACUGCCUUGAUCGGCCUGCCAUGGGUCAUCAGACUGCUUCCUAAAUUGAGAGAAACUGAGCAAUCUCUCAGCCACUGCUAUAGUCUAЖCUUCUUGUUUGCUGAGUAAUUGUUUCUAAUGUCUCUGAACUCAAAGUGAGGUGCUCCAAGACGCUGUGAACUUCUGCAAAGACACCUCCUUACCUACUGGGAUCACGUGACCUGACCUCACUCCCAGCCAGGCUCCCAAAGGGCUCAUUCCAGCCAUUCCAAUCUCUUCUUCUUUAUGCAAACACUUUUCCCCCACAACAAGCCUUGUUUGUUCCGAUAGGAAUACGUGUACGUCAGUGCACUUGUCCUUACGUCAGUUCCUUACACCACCAAAGCACUUCACCUUUCUGGAAAUAAAACUUUUAAGACACUACUAUAAGUAAAAAUGAGAGUAUUCACUAGACUUAUUGCUCAGGCACAUUUGAGUGGGUCCCAGCUGUGUGAUUAAGAAGUCAACUGGGUGGCCUUUUCUGGGUUAUCUUCUGAUCAUGGCCUUUCAACCCAACAAGGGCCCUUCCCUGCUCUUCCACCAGUAAAGGCUCCUGGCCUCUCAUCAGGAUCUGCCCCCCAGAGACCCCCCCCAGACACUGCAGGGCCUGGUGAUGCUGUCCUCUGUACCGGAAAUGGCAGGCACUGUCAGAUUUCCACUCUUCUGCCUPUAGGAAGGCUGGGUGCUUCUUGCUCUGACAGCCAGUCUGGGGAGAUGACUCUUACGUUGCUUGAGUCUUGGUGGCAGGCUGCUGUCCACGGGGGAGAAGUCUCUGCUCUGGACUGGACAGAAGAGAGACUUUUACCCUGGGGCACUCACACGGCCAAGCUUCUGCCACCACUUCAUUAGCUGUAUUCUCCAUAGUAUGGUGAAAUAGCAGGUGCGUCUUCUAGUUUAUUCCPCCUGGGGACAUUUCCUCAAAGCAGUUUUGCGCCCCCGCAAGGGAAUGGUCAGCCUAAGGGUAAUGUACAGCCCGUGCUUGGAGAACCAUGGAAGCUACACCCCUACAGGUGCAUACUGUUCUGCUUUUCCAAUAAAUACGAGCGGCGAUUUCAACCACAA
Sequence (SHORT NAMES ENCODING)	AUGCCGAGCCCCGUGGCGGAGACAGCGGUGCGCUCAGCUCCCGGGAGCGGCCCGAGCAGCCGAGCGCCCAGGGCUGCCCUUCCCGGGCCGGCGGGCUCCCCGGGCUCCCCGCCGCCGCCCCGUGCGCCCCGGGAGGGCCCGGCAUGCUGCGCCAGCUGCUGCUCGCCGCGCUCUGCCUGGCGGGUCCCCCAGCGCCCGCGCGCGCCUGCCAGCUGCCCUCCGAGUGGAGGCCCCUGAGCGAGGGCUGCCGCGCCGAGCUGGCCGAGACCAUCGUGUACGCCAGGGUGCUGGCGCUGCACCCCGAGGCGCCCGGCCUCUACAACCACCUGCCCUGGCAGUACCACGCCGGCCAGGGGGGCCUCUUCUACUCGGCCGAGGUCGAGAUGCUGUGCGACCAGGCGUGGGGCAGCAUGCUGGAGGUGCCCGCCGGCUCCAGGCUCAACCUCACCGGCCUGGGCUACUUCUCGUGCCACUCCCACACCGUGGUCCAGGACUACUCCUAUUUCUUCUUCCUCAGGAUGGAUGAAAAUUAUAACCUCUUGCCUCACGGAGUCAAUUUCCAAGAUGCCAUCUUCCCAGACACUCAAGAGAACAGAAGGAUGUUUUCUAGCCUUUUCCAGUUUUCAAACUGUUCGCAAGGGCAGCAGCUGGCGACUUUCUCCAGUGACUGGGAAAUCCAGGAAGACAGUAGGCUCAUGUGCUCCUCGGUGCAGAAGGCCUUGUUUGAGGAGGAGGACCACGUCAAGAAACUGCAGCAGAAAGUGGCCACCCUGGAGAAGCGCAACCGGCAGCUCCGGGAGCGAGUGAAGAAGGUCAAGAGGUCCUUGCGGCAGGCGCGUAAGAAGGGCCGCCACCUGGAGCUGGCGAACCAGAAm6ACUCAGUGAGAAGCUGGCGGCGGGCGCGCUGCCGCACAUCAAUGCCCGGGGGCCCGUGCGCCCCCCCUACCUGCGGGGGUAACGGGCCUGGGGGCUGCCAGGUGUGCAGGGCCAAUCCUGACGGUAAUUGAGAAUGAGUGAGGUUUCGUACAUGCAGCUAUUUCAAGGGUUGUAAGAGUUUUUGUUUUUAAUCACGCAUUUGGUAGAGUCUAAAUGGAUAAAAUGCAAGGCUUGCUUUCCCCUUGGGUGCUGGCCUCAAUGUCAGACCCCACGCGCUGCCCCUUCCUGGCCUGACCCCAGACGCAGUGCCUGGCAGUCCAGAGGCAGUGGGAUCCCUGAGUGCUGAAUGCUCGCCUGCAGAGCAGCCCAGAAAGAGCCCUGACUGGGGAGAGAACAUUUUAGAAUCUCUAGUGUAAAAGACAUCAACGUGCUUAGCCUYUAUUUCAGAAAAAAAUCAGGGUGGUUCCCAGCUCCCCAGUCCAGGACAACCAUUAGUCCUGAUGAGUGAGCUGACGCUGGUGCUGGAACCUGCUGGCACCUCACUGGCCACAUCUUUGGAAGGGGAUGGUGGCCUUGCAYCCAAGAUGCCUGAAAAUCAGCACGUGCAGGGCCUCCCUAUCCAGCCAGCAUUUUCCUUCCAGCUGAGGCAGGUGAAGACUUCAUAAGCUCAUCACAGGGGAGGGAAUUAGGAGCAGGGCAGCAGGUAAUUAAACAAGAUAAAUUAUACCUGAUUUCCAACACCAGCUACAAAGAGUUGAAGAUGAUACCUAUGGGUCGCGUUAACACAGGGGGCAACUGCCUUGAUCGGCCUGCCAUGGGUCAUCAGACUGCUUCCUAAAUUGAGAGAAACUGAGCAAUCUCUCAGCCACUGCUAUAGUCUAm6ACUUCUUGUUUGCUGAGUAAUUGUUUCUAAUGUCUCUGAACUCAAAGUGAGGUGCUCCAAGACGCUGUGAACUUCUGCAAAGACACCUCCUUACCUACUGGGAUCACGUGACCUGACCUCACUCCCAGCCAGGCUCCCAAAGGGCUCAUUCCAGCCAUUCCAAUCUCUUCUUCUUUAUGCAAACACUUUUCCCCCACAACAAGCCUUGUUUGUUCCGAUAGGAAUACGUGUACGUCAGUGCACUUGUCCUUACGUCAGUUCCUUACACCACCAAAGCACUUCACCUUUCUGGAAAUAAAACUUUUAAGACACUACUAUAAGUAAAAAUGAGAGUAUUCACUAGACUUAUUGCUCAGGCACAUUUGAGUGGGUCCCAGCUGUGUGAUUAAGAAGUCAACUGGGUGGCCUUUUCUGGGUUAUCUUCUGAUCAUGGCCUUUCAACCCAACAAGGGCCCUUCCCUGCUCUUCCACCAGUAAAGGCUCCUGGCCUCUCAUCAGGAUCUGCCCCCCAGAGACCCCCCCCAGACACUGCAGGGCCUGGUGAUGCUGUCCUCUGUACCGGAAAUGGCAGGCACUGUCAGAUUUCCACUCUUCUGCCUYUAGGAAGGCUGGGUGCUUCUUGCUCUGACAGCCAGUCUGGGGAGAUGACUCUUACGUUGCUUGAGUCUUGGUGGCAGGCUGCUGUCCACGGGGGAGAAGUCUCUGCUCUGGACUGGACAGAAGAGAGACUUUUACCCUGGGGCACUCACACGGCCAAGCUUCUGCCACCACUUCAUUAGCUGUAUUCUCCAUAGUAUGGUGAAAUAGCAGGUGCGUCUUCUAGUUUAUUCCYCCUGGGGACAUUUCCUCAAAGCAGUUUUGCGCCCCCGCAAGGGAAUGGUCAGCCUAAGGGUAAUGUACAGCCCGUGCUUGGAGAACCAUGGAAGCUACACCCCUACAGGUGCAUACUGUUCUGCUUUUCCAAUAAAUACGAGCGGCGAUUUCAACCACAA
Sequence (MODOMICS CODE ENCODING)	AUGCCGAGCCCCGUGGCGGAGACAGCGGUGCGCUCAGCUCCCGGGAGCGGCCCGAGCAGCCGAGCGCCCAGGGCUGCCCUUCCCGGGCCGGCGGGCUCCCCGGGCUCCCCGCCGCCGCCCCGUGCGCCCCGGGAGGGCCCGGCAUGCUGCGCCAGCUGCUGCUCGCCGCGCUCUGCCUGGCGGGUCCCCCAGCGCCCGCGCGCGCCUGCCAGCUGCCCUCCGAGUGGAGGCCCCUGAGCGAGGGCUGCCGCGCCGAGCUGGCCGAGACCAUCGUGUACGCCAGGGUGCUGGCGCUGCACCCCGAGGCGCCCGGCCUCUACAACCACCUGCCCUGGCAGUACCACGCCGGCCAGGGGGGCCUCUUCUACUCGGCCGAGGUCGAGAUGCUGUGCGACCAGGCGUGGGGCAGCAUGCUGGAGGUGCCCGCCGGCUCCAGGCUCAACCUCACCGGCCUGGGCUACUUCUCGUGCCACUCCCACACCGUGGUCCAGGACUACUCCUAUUUCUUCUUCCUCAGGAUGGAUGAAAAUUAUAACCUCUUGCCUCACGGAGUCAAUUUCCAAGAUGCCAUCUUCCCAGACACUCAAGAGAACAGAAGGAUGUUUUCUAGCCUUUUCCAGUUUUCAAACUGUUCGCAAGGGCAGCAGCUGGCGACUUUCUCCAGUGACUGGGAAAUCCAGGAAGACAGUAGGCUCAUGUGCUCCUCGGUGCAGAAGGCCUUGUUUGAGGAGGAGGACCACGUCAAGAAACUGCAGCAGAAAGUGGCCACCCUGGAGAAGCGCAACCGGCAGCUCCGGGAGCGAGUGAAGAAGGUCAAGAGGUCCUUGCGGCAGGCGCGUAAGAAGGGCCGCCACCUGGAGCUGGCGAACCAGAA2000000006ACUCAGUGAGAAGCUGGCGGCGGGCGCGCUGCCGCACAUCAAUGCCCGGGGGCCCGUGCGCCCCCCCUACCUGCGGGGGUAACGGGCCUGGGGGCUGCCAGGUGUGCAGGGCCAAUCCUGACGGUAAUUGAGAAUGAGUGAGGUUUCGUACAUGCAGCUAUUUCAAGGGUUGUAAGAGUUUUUGUUUUUAAUCACGCAUUUGGUAGAGUCUAAAUGGAUAAAAUGCAAGGCUUGCUUUCCCCUUGGGUGCUGGCCUCAAUGUCAGACCCCACGCGCUGCCCCUUCCUGGCCUGACCCCAGACGCAGUGCCUGGCAGUCCAGAGGCAGUGGGAUCCCUGAGUGCUGAAUGCUCGCCUGCAGAGCAGCCCAGAAAGAGCCCUGACUGGGGAGAGAACAUUUUAGAAUCUCUAGUGUAAAAGACAUCAACGUGCUUAGCCU2000000009UUAUUUCAGAAAAAAAUCAGGGUGGUUCCCAGCUCCCCAGUCCAGGACAACCAUUAGUCCUGAUGAGUGAGCUGACGCUGGUGCUGGAACCUGCUGGCACCUCACUGGCCACAUCUUUGGAAGGGGAUGGUGGCCUUGCA2000000009UCCAAGAUGCCUGAAAAUCAGCACGUGCAGGGCCUCCCUAUCCAGCCAGCAUUUUCCUUCCAGCUGAGGCAGGUGAAGACUUCAUAAGCUCAUCACAGGGGAGGGAAUUAGGAGCAGGGCAGCAGGUAAUUAAACAAGAUAAAUUAUACCUGAUUUCCAACACCAGCUACAAAGAGUUGAAGAUGAUACCUAUGGGUCGCGUUAACACAGGGGGCAACUGCCUUGAUCGGCCUGCCAUGGGUCAUCAGACUGCUUCCUAAAUUGAGAGAAACUGAGCAAUCUCUCAGCCACUGCUAUAGUCUA2000000006ACUUCUUGUUUGCUGAGUAAUUGUUUCUAAUGUCUCUGAACUCAAAGUGAGGUGCUCCAAGACGCUGUGAACUUCUGCAAAGACACCUCCUUACCUACUGGGAUCACGUGACCUGACCUCACUCCCAGCCAGGCUCCCAAAGGGCUCAUUCCAGCCAUUCCAAUCUCUUCUUCUUUAUGCAAACACUUUUCCCCCACAACAAGCCUUGUUUGUUCCGAUAGGAAUACGUGUACGUCAGUGCACUUGUCCUUACGUCAGUUCCUUACACCACCAAAGCACUUCACCUUUCUGGAAAUAAAACUUUUAAGACACUACUAUAAGUAAAAAUGAGAGUAUUCACUAGACUUAUUGCUCAGGCACAUUUGAGUGGGUCCCAGCUGUGUGAUUAAGAAGUCAACUGGGUGGCCUUUUCUGGGUUAUCUUCUGAUCAUGGCCUUUCAACCCAACAAGGGCCCUUCCCUGCUCUUCCACCAGUAAAGGCUCCUGGCCUCUCAUCAGGAUCUGCCCCCCAGAGACCCCCCCCAGACACUGCAGGGCCUGGUGAUGCUGUCCUCUGUACCGGAAAUGGCAGGCACUGUCAGAUUUCCACUCUUCUGCCU2000000009UUAGGAAGGCUGGGUGCUUCUUGCUCUGACAGCCAGUCUGGGGAGAUGACUCUUACGUUGCUUGAGUCUUGGUGGCAGGCUGCUGUCCACGGGGGAGAAGUCUCUGCUCUGGACUGGACAGAAGAGAGACUUUUACCCUGGGGCACUCACACGGCCAAGCUUCUGCCACCACUUCAUUAGCUGUAUUCUCCAUAGUAUGGUGAAAUAGCAGGUGCGUCUUCUAGUUUAUUCC2000000009UCCUGGGGACAUUUCCUCAAAGCAGUUUUGCGCCCCCGCAAGGGAAUGGUCAGCCUAAGGGUAAUGUACAGCCCGUGCUUGGAGAACCAUGGAAGCUACACCCCUACAGGUGCAUACUGUUCUGCUUUUCCAAUAAAUACGAGCGGCGAUUUCAACCACAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	875	1313	1453	1756	2355	2587
Modification Positions	m6A	Y	Y	m6A	Y	Y
Genomic Coordinates	10:12898497:-	10:12898059:-	10:12897919:-	10:12897616:-	10:12897017:-	10:12896785:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8