Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000670664
Gene ID: ENSG00000224817
Gene Name: LINC03046
Sequence (UNICHARACTER ENCODING) GAGUAGCUGGGACUACAGGCGCCCGCCAUUACGCCCGGCUAAUUUUAUUUUAUUUUAUUUUUAGUAGAGACAGGGUUUCACUGUGUUAGCCAGGAUGGUCUGUGUCUCCUGACCUCGUGAUCCACCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAAAAUGCGUGAGCCACCACGCCCGGCUGAUGGUUUUAUUAAUAUAAGGGЖCUUUAACCCUUUGCUCAGGЖCUUCUACUUGCUGCUGCCAUGUGAAGAAGGACAUAUUUGCUUCCCCUUUCACCAUGAUUAAAAGCAAUUUUGUUAAUCACUUUAGCACCAAUUCUUGCAUCCCUGGCAAUACUCAGAACUGCUUCCAUCCAAGUCUUUGAUGUGGGAAAGAAACACACACACACUCUUUCGCAUGUAAUCUGAAAACAAUUCACCUCUUGCCAAUGAAUGCACAGCACUCCACUUUAAUAGAGAGCAAGUUCUGUGGAGGUUUCUAAUCCUUUCUGCCAAAGAAGAGAAGAGAGAGAAUCACUCAGGAUCCCAUCCAGAAUACAUUACCUUUAGUCAUCAUGUCUCCUGUGGCUCUUCUUGGCUGUGACAGUUUCUCAGCUUUCCCAGUUUUAAUGAЖCUUGCCAUUUUCAUCAGAUUGUACCAAGACCUACUAUCAAUAUGACUUAUGACUAGUGGUGCUGACCUUGAUCACCUGGCUGAGGUAGUUCUUGUCAGGCUUCUCCACUGUCGAGUUGCUCUCCCCAUCCCCCUUUUCCAUAUUGUACUCUUUGAAAGAAAGUCACUAUAUGCAGCCCUUCCUUAAAAAUAUUAAAAUGAACUAGCUUAA
Sequence (SHORT NAMES ENCODING) GAGUAGCUGGGACUACAGGCGCCCGCCAUUACGCCCGGCUAAUUUUAUUUUAUUUUAUUUUUAGUAGAGACAGGGUUUCACUGUGUUAGCCAGGAUGGUCUGUGUCUCCUGACCUCGUGAUCCACCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAAAAUGCGUGAGCCACCACGCCCGGCUGAUGGUUUUAUUAAUAUAAGGGm6ACUUUAACCCUUUGCUCAGGm6ACUUCUACUUGCUGCUGCCAUGUGAAGAAGGACAUAUUUGCUUCCCCUUUCACCAUGAUUAAAAGCAAUUUUGUUAAUCACUUUAGCACCAAUUCUUGCAUCCCUGGCAAUACUCAGAACUGCUUCCAUCCAAGUCUUUGAUGUGGGAAAGAAACACACACACACUCUUUCGCAUGUAAUCUGAAAACAAUUCACCUCUUGCCAAUGAAUGCACAGCACUCCACUUUAAUAGAGAGCAAGUUCUGUGGAGGUUUCUAAUCCUUUCUGCCAAAGAAGAGAAGAGAGAGAAUCACUCAGGAUCCCAUCCAGAAUACAUUACCUUUAGUCAUCAUGUCUCCUGUGGCUCUUCUUGGCUGUGACAGUUUCUCAGCUUUCCCAGUUUUAAUGAm6ACUUGCCAUUUUCAUCAGAUUGUACCAAGACCUACUAUCAAUAUGACUUAUGACUAGUGGUGCUGACCUUGAUCACCUGGCUGAGGUAGUUCUUGUCAGGCUUCUCCACUGUCGAGUUGCUCUCCCCAUCCCCCUUUUCCAUAUUGUACUCUUUGAAAGAAAGUCACUAUAUGCAGCCCUUCCUUAAAAAUAUUAAAAUGAACUAGCUUAA
Sequence (MODOMICS CODE ENCODING) GAGUAGCUGGGACUACAGGCGCCCGCCAUUACGCCCGGCUAAUUUUAUUUUAUUUUAUUUUUAGUAGAGACAGGGUUUCACUGUGUUAGCCAGGAUGGUCUGUGUCUCCUGACCUCGUGAUCCACCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAAAAUGCGUGAGCCACCACGCCCGGCUGAUGGUUUUAUUAAUAUAAGGG2000000006ACUUUAACCCUUUGCUCAGG2000000006ACUUCUACUUGCUGCUGCCAUGUGAAGAAGGACAUAUUUGCUUCCCCUUUCACCAUGAUUAAAAGCAAUUUUGUUAAUCACUUUAGCACCAAUUCUUGCAUCCCUGGCAAUACUCAGAACUGCUUCCAUCCAAGUCUUUGAUGUGGGAAAGAAACACACACACACUCUUUCGCAUGUAAUCUGAAAACAAUUCACCUCUUGCCAAUGAAUGCACAGCACUCCACUUUAAUAGAGAGCAAGUUCUGUGGAGGUUUCUAAUCCUUUCUGCCAAAGAAGAGAAGAGAGAGAAUCACUCAGGAUCCCAUCCAGAAUACAUUACCUUUAGUCAUCAUGUCUCCUGUGGCUCUUCUUGGCUGUGACAGUUUCUCAGCUUUCCCAGUUUUAAUGA2000000006ACUUGCCAUUUUCAUCAGAUUGUACCAAGACCUACUAUCAAUAUGACUUAUGACUAGUGGUGCUGACCUUGAUCACCUGGCUGAGGUAGUUCUUGUCAGGCUUCUCCACUGUCGAGUUGCUCUCCCCAUCCCCCUUUUCCAUAUUGUACUCUUUGAAAGAAAGUCACUAUAUGCAGCCCUUCCUUAAAAAUAUUAAAAUGAACUAGCUUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 206 226 614
Modification Positions m6A m6A m6A
Genomic Coordinates 10:101729832:- 10:101729812:- 10:101702204:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
V5PvfiKsgFMd
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G