General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000373970
Gene ID:	ENSG00000107984
Gene Name:	DKK1
Sequence (UNICHARACTER ENCODING)	GCAGAGCUCUGUGCUCCCUGCAGUCAGGACUCUGGGACCGCAGGGGGCUCCCGGACCCUGACUCUGCAGCCGAACCGGCACGGUUUCGUGGGGACCCAGGCUUGCAAAGUGACGGUCAUUUUCUCUUUCUUUCUCCCUCUUGAGUCCUUCUGAGAUGAUGGCUCUGGGCGCAGCGGGAGCUACCCGGGUCUUUGUCGCGAUGGUAGCGGCGGCUCUCGGCGGCCACCCUCUGCUGGGAGUGAGCGCCACCUUGAACUCGGUUCUCAAUUCCAACGCUAUCAAGAACCUGCCCCCACCGCUGGGCGGCGCUGCGGGGCACCCAGGCUCUGCAGUCAGCGCCGCGCCGGGAAUCCUGUACCCGGGCGGGAAUAAGUACCAGACCAUUGACAACUACCAGCCGUACCCGUGCGCAGAGGACGAGGAGUGCGGCACUGAUGAGUACUGCGCUAGUCCCACCCGCGGAGGGGACGCAGGCGUGCAAAUCUGUCUCGCCUGCAGGAAGCGCCGAAAACGCUGCAUGCGUCACGCUAUGUGCUGCCCCGGGAAUUACUGCAAAAAUGGAAUAUGUGUGUCUUCUGAUCAAAAUCAUUUCCGAGGAGAAAUUGAGGAAACCAUCACUGAAAGCUUUGGUAAUGAUCAUAGCACCUUGGAUGGGUAUUCCAGAAGAЖCCACCUUGUCUUCAAAAAUGUAUCACACCAAAGGACAAGAAGGUUCUGUUUGUCUCCGGUCAUCAGACUGUGCCUCAGGAUUGUGUUGUGCUAGACACUUCUGGUCCAAGAUCUGUAAACCUGUCCUGAAAGAAGGUCAAGUGUGUACCAAGCAUAGGAGAAAAGGCUCUCAUGGЖCUAGAAAUAUUCCAGCGUUGUUACUGUGGAGAAGGUCUGUCUUGCCGGAUACAGAAAGAUCACCAUCAAGCCAGUAAUUCUUCUAGGCUUCACACUUGUCAGAGЖCACUAAЖCCAGCUAUCCAAAUGCAGUGAЖCUCCUUUUAUAUAAUAGAUGCUAUGAAAACCUUUUAUGACCUUCAUCAACUCAAUCCUAAGGAUAUACAAGUUCUGUGGUUUCAGUUAAGCAUUCCAAUAACACCUUCCAAAAACCUGGAGUGUAAGAGCUUUGUUUCUPUAUGGAACUCCCCUGUGAUUGCAGUAAAUUACUGUAUUGUAAAUUCUCAGUGUGGCACUUACCUGUAAAUGCAAUGAAACUUUUAAUUAUUUUUCUAAAGGUGCUGCACUGCCUAUUUUUCCUCUUGUUAUGUAAAUUUUUGUACACAUUGAUUGUUAUCUUGACUGACAAAUAUUCUAUAUUGAACUGAAGUAAAUCAUUUCAGCUUAUAGUUCUUAAAAGCAUAACCCUPUACCCCAUUUAAUUCUAGAGUCUAGAACGCAAGGAUCUCUUGGAAUGACAAAUGAUAGGUACCUAAAAUGUAACAUGAAAAUACUAGCUUAUUUUCUGAAAUGUACUAUCUUAAUGCUUAAAUUAUAUUUCCCUPUAGGCUGUGAUAGUUUUUGAAAUAAAAUUUAACAUUUAAUAUCAUGAAAUGUUAUAAGUAGACAUACAUUUUGGGAUUGUGAUCUUAGAGGUUUGUGUGUGUGUACGUAUGUGUGUGUUCUACAAGAACGGAAGUGUGAUAUGUUUAAAGAUGAUCAGAGAAAAGACAGUGUCUAAAUAUAAGACAAUAUUGAUCAGCUCUAGAAUAACUUUAAAGAAAGACGUGUUCUGCAUUGAUAAACUCAAAUGAUCAUGGCAGAAUGAGAGUGAAUCUUACAUUACUACUUUCAAAAAUAGUUUCCAAUAAAUUAAUAAUACCUA
Sequence (SHORT NAMES ENCODING)	GCAGAGCUCUGUGCUCCCUGCAGUCAGGACUCUGGGACCGCAGGGGGCUCCCGGACCCUGACUCUGCAGCCGAACCGGCACGGUUUCGUGGGGACCCAGGCUUGCAAAGUGACGGUCAUUUUCUCUUUCUUUCUCCCUCUUGAGUCCUUCUGAGAUGAUGGCUCUGGGCGCAGCGGGAGCUACCCGGGUCUUUGUCGCGAUGGUAGCGGCGGCUCUCGGCGGCCACCCUCUGCUGGGAGUGAGCGCCACCUUGAACUCGGUUCUCAAUUCCAACGCUAUCAAGAACCUGCCCCCACCGCUGGGCGGCGCUGCGGGGCACCCAGGCUCUGCAGUCAGCGCCGCGCCGGGAAUCCUGUACCCGGGCGGGAAUAAGUACCAGACCAUUGACAACUACCAGCCGUACCCGUGCGCAGAGGACGAGGAGUGCGGCACUGAUGAGUACUGCGCUAGUCCCACCCGCGGAGGGGACGCAGGCGUGCAAAUCUGUCUCGCCUGCAGGAAGCGCCGAAAACGCUGCAUGCGUCACGCUAUGUGCUGCCCCGGGAAUUACUGCAAAAAUGGAAUAUGUGUGUCUUCUGAUCAAAAUCAUUUCCGAGGAGAAAUUGAGGAAACCAUCACUGAAAGCUUUGGUAAUGAUCAUAGCACCUUGGAUGGGUAUUCCAGAAGAm6ACCACCUUGUCUUCAAAAAUGUAUCACACCAAAGGACAAGAAGGUUCUGUUUGUCUCCGGUCAUCAGACUGUGCCUCAGGAUUGUGUUGUGCUAGACACUUCUGGUCCAAGAUCUGUAAACCUGUCCUGAAAGAAGGUCAAGUGUGUACCAAGCAUAGGAGAAAAGGCUCUCAUGGm6ACUAGAAAUAUUCCAGCGUUGUUACUGUGGAGAAGGUCUGUCUUGCCGGAUACAGAAAGAUCACCAUCAAGCCAGUAAUUCUUCUAGGCUUCACACUUGUCAGAGm6ACACUAAm6ACCAGCUAUCCAAAUGCAGUGAm6ACUCCUUUUAUAUAAUAGAUGCUAUGAAAACCUUUUAUGACCUUCAUCAACUCAAUCCUAAGGAUAUACAAGUUCUGUGGUUUCAGUUAAGCAUUCCAAUAACACCUUCCAAAAACCUGGAGUGUAAGAGCUUUGUUUCUYUAUGGAACUCCCCUGUGAUUGCAGUAAAUUACUGUAUUGUAAAUUCUCAGUGUGGCACUUACCUGUAAAUGCAAUGAAACUUUUAAUUAUUUUUCUAAAGGUGCUGCACUGCCUAUUUUUCCUCUUGUUAUGUAAAUUUUUGUACACAUUGAUUGUUAUCUUGACUGACAAAUAUUCUAUAUUGAACUGAAGUAAAUCAUUUCAGCUUAUAGUUCUUAAAAGCAUAACCCUYUACCCCAUUUAAUUCUAGAGUCUAGAACGCAAGGAUCUCUUGGAAUGACAAAUGAUAGGUACCUAAAAUGUAACAUGAAAAUACUAGCUUAUUUUCUGAAAUGUACUAUCUUAAUGCUUAAAUUAUAUUUCCCUYUAGGCUGUGAUAGUUUUUGAAAUAAAAUUUAACAUUUAAUAUCAUGAAAUGUUAUAAGUAGACAUACAUUUUGGGAUUGUGAUCUUAGAGGUUUGUGUGUGUGUACGUAUGUGUGUGUUCUACAAGAACGGAAGUGUGAUAUGUUUAAAGAUGAUCAGAGAAAAGACAGUGUCUAAAUAUAAGACAAUAUUGAUCAGCUCUAGAAUAACUUUAAAGAAAGACGUGUUCUGCAUUGAUAAACUCAAAUGAUCAUGGCAGAAUGAGAGUGAAUCUUACAUUACUACUUUCAAAAAUAGUUUCCAAUAAAUUAAUAAUACCUA
Sequence (MODOMICS CODE ENCODING)	GCAGAGCUCUGUGCUCCCUGCAGUCAGGACUCUGGGACCGCAGGGGGCUCCCGGACCCUGACUCUGCAGCCGAACCGGCACGGUUUCGUGGGGACCCAGGCUUGCAAAGUGACGGUCAUUUUCUCUUUCUUUCUCCCUCUUGAGUCCUUCUGAGAUGAUGGCUCUGGGCGCAGCGGGAGCUACCCGGGUCUUUGUCGCGAUGGUAGCGGCGGCUCUCGGCGGCCACCCUCUGCUGGGAGUGAGCGCCACCUUGAACUCGGUUCUCAAUUCCAACGCUAUCAAGAACCUGCCCCCACCGCUGGGCGGCGCUGCGGGGCACCCAGGCUCUGCAGUCAGCGCCGCGCCGGGAAUCCUGUACCCGGGCGGGAAUAAGUACCAGACCAUUGACAACUACCAGCCGUACCCGUGCGCAGAGGACGAGGAGUGCGGCACUGAUGAGUACUGCGCUAGUCCCACCCGCGGAGGGGACGCAGGCGUGCAAAUCUGUCUCGCCUGCAGGAAGCGCCGAAAACGCUGCAUGCGUCACGCUAUGUGCUGCCCCGGGAAUUACUGCAAAAAUGGAAUAUGUGUGUCUUCUGAUCAAAAUCAUUUCCGAGGAGAAAUUGAGGAAACCAUCACUGAAAGCUUUGGUAAUGAUCAUAGCACCUUGGAUGGGUAUUCCAGAAGA2000000006ACCACCUUGUCUUCAAAAAUGUAUCACACCAAAGGACAAGAAGGUUCUGUUUGUCUCCGGUCAUCAGACUGUGCCUCAGGAUUGUGUUGUGCUAGACACUUCUGGUCCAAGAUCUGUAAACCUGUCCUGAAAGAAGGUCAAGUGUGUACCAAGCAUAGGAGAAAAGGCUCUCAUGG2000000006ACUAGAAAUAUUCCAGCGUUGUUACUGUGGAGAAGGUCUGUCUUGCCGGAUACAGAAAGAUCACCAUCAAGCCAGUAAUUCUUCUAGGCUUCACACUUGUCAGAG2000000006ACACUAA2000000006ACCAGCUAUCCAAAUGCAGUGA2000000006ACUCCUUUUAUAUAAUAGAUGCUAUGAAAACCUUUUAUGACCUUCAUCAACUCAAUCCUAAGGAUAUACAAGUUCUGUGGUUUCAGUUAAGCAUUCCAAUAACACCUUCCAAAAACCUGGAGUGUAAGAGCUUUGUUUCU2000000009UUAUGGAACUCCCCUGUGAUUGCAGUAAAUUACUGUAUUGUAAAUUCUCAGUGUGGCACUUACCUGUAAAUGCAAUGAAACUUUUAAUUAUUUUUCUAAAGGUGCUGCACUGCCUAUUUUUCCUCUUGUUAUGUAAAUUUUUGUACACAUUGAUUGUUAUCUUGACUGACAAAUAUUCUAUAUUGAACUGAAGUAAAUCAUUUCAGCUUAUAGUUCUUAAAAGCAUAACCCU2000000009UUACCCCAUUUAAUUCUAGAGUCUAGAACGCAAGGAUCUCUUGGAAUGACAAAUGAUAGGUACCUAAAAUGUAACAUGAAAAUACUAGCUUAUUUUCUGAAAUGUACUAUCUUAAUGCUUAAAUUAUAUUUCCCU2000000009UUAGGCUGUGAUAGUUUUUGAAAUAAAAUUUAACAUUUAAUAUCAUGAAAUGUUAUAAGUAGACAUACAUUUUGGGAUUGUGAUCUUAGAGGUUUGUGUGUGUGUACGUAUGUGUGUGUUCUACAAGAACGGAAGUGUGAUAUGUUUAAAGAUGAUCAGAGAAAAGACAGUGUCUAAAUAUAAGACAAUAUUGAUCAGCUCUAGAAUAACUUUAAAGAAAGACGUGUUCUGCAUUGAUAAACUCAAAUGAUCAUGGCAGAAUGAGAGUGAAUCUUACAUUACUACUUUCAAAAAUAGUUUCCAAUAAAUUAAUAAUACCUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	668	844	949	956	978	1118	1350	1485
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	Y	Y
Genomic Coordinates	10:52316402:+	10:52316696:+	10:52316801:+	10:52316808:+	10:52316830:+	10:52316970:+	10:52317202:+	10:52317337:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx Ap2q43bQLNek jNkxUQNx8GRd nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn nfCHyrYzE6fB bXBqJigD9oV3 f6YSioLdAWpr	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh KRfQJWH4K5KH nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn nfCHyrYzE6fB Lny8GcCeVGc9 bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	6AyXsheySjfx Ap2q43bQLNek QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr