Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000491557
Gene ID: ENSG00000237149
Gene Name: ZNF503-AS2
Sequence (UNICHARACTER ENCODING) GCUUUUCCGCCCCGGCUCUUCUUUUGUUGUCAAGUCCUUUUGAUAAAUGGUGGGGCUGGGAGCUCUGGGAGUCGGGAGCCAGUCUGUGCCCGCGUGGGGGGCGGGGGCCGAGCCUGGAGACCCGGUUUCGACCGGCGCGCACCUGGGGCUGAGCCGGGUGCGCGCGGGGGUCGGGUCUGGAACUGCCCUUGGUAUGCUCGCCCUCUCCUCUUGGCCCAUCUCACUCCCCUCCCCCACCUGACUCCCCUCCCCGGCUUCUUUCUCUGUCUCCCACUCCGCACGGGUACCGAGAACUUUCCGGGAAUCGACGGGAUUUCUCUGGCUGUCGUUUGCGCUGCAUUUAUCCGAAUACAUCCAGCUCGCAGGCAUCCUGCAAGAAACGGCUCCCGGCUCGCGUGUACGCCGACACCUCGGCCCAACGCAGGЖCUCGAGGUGGUUUCUAGUGCCCGGGUGGCUGCAAGUCUGCCCUCCGAGGGAGGCUGGЖCAAGCGGCGCCCCCAGGUCGAGCGGCCUCUCGCUGCCUGGCAGUGCCUGGCAGCCCCCACCUCUGCCAGUGCUUCGGAAACCCGCCUGGCCAGGUUCGCCCGCGGUGAAAAAUGAAAGCAAAUUCCCCAACAGAGGUAGCCGGAЖCUUUCCUCGACGAAGGCUCCCUCCUGCGCCUGUGUCUGGAGAACCCCCAGAGCGCUGCAAGUUAGCAAGAGAGAUUCGAUGGCGGCUCUGGAAGGCGCACGAAGGGUGGGGCGGGGGAGCAAAGAGGCCACUGGGUGACCCAGCCUGGUCCGGGGUGAAACGCUAGAGAAGGCGCCUCGCCUUCCUUAUUUCAAUGCAACUCCUCGGCCCCAGACGGUAAAAAUAGUUUCCAAGCUGCCGCGGЖCGCCCAGGAUGUGUUUGCAGAGAUCAAЖCUGGGGAGGAGGCAGCUUUGUAAAAGUUGCAGAAAGAUUAGCCGAGAAGCGUCCGCCCGGCGGGGCUCAAGAAAGCUUGGGGЖCAGCUCCAUGUUCCUUGGGGCG
Sequence (SHORT NAMES ENCODING) GCUUUUCCGCCCCGGCUCUUCUUUUGUUGUCAAGUCCUUUUGAUAAAUGGUGGGGCUGGGAGCUCUGGGAGUCGGGAGCCAGUCUGUGCCCGCGUGGGGGGCGGGGGCCGAGCCUGGAGACCCGGUUUCGACCGGCGCGCACCUGGGGCUGAGCCGGGUGCGCGCGGGGGUCGGGUCUGGAACUGCCCUUGGUAUGCUCGCCCUCUCCUCUUGGCCCAUCUCACUCCCCUCCCCCACCUGACUCCCCUCCCCGGCUUCUUUCUCUGUCUCCCACUCCGCACGGGUACCGAGAACUUUCCGGGAAUCGACGGGAUUUCUCUGGCUGUCGUUUGCGCUGCAUUUAUCCGAAUACAUCCAGCUCGCAGGCAUCCUGCAAGAAACGGCUCCCGGCUCGCGUGUACGCCGACACCUCGGCCCAACGCAGGm6ACUCGAGGUGGUUUCUAGUGCCCGGGUGGCUGCAAGUCUGCCCUCCGAGGGAGGCUGGm6ACAAGCGGCGCCCCCAGGUCGAGCGGCCUCUCGCUGCCUGGCAGUGCCUGGCAGCCCCCACCUCUGCCAGUGCUUCGGAAACCCGCCUGGCCAGGUUCGCCCGCGGUGAAAAAUGAAAGCAAAUUCCCCAACAGAGGUAGCCGGAm6ACUUUCCUCGACGAAGGCUCCCUCCUGCGCCUGUGUCUGGAGAACCCCCAGAGCGCUGCAAGUUAGCAAGAGAGAUUCGAUGGCGGCUCUGGAAGGCGCACGAAGGGUGGGGCGGGGGAGCAAAGAGGCCACUGGGUGACCCAGCCUGGUCCGGGGUGAAACGCUAGAGAAGGCGCCUCGCCUUCCUUAUUUCAAUGCAACUCCUCGGCCCCAGACGGUAAAAAUAGUUUCCAAGCUGCCGCGGm6ACGCCCAGGAUGUGUUUGCAGAGAUCAAm6ACUGGGGAGGAGGCAGCUUUGUAAAAGUUGCAGAAAGAUUAGCCGAGAAGCGUCCGCCCGGCGGGGCUCAAGAAAGCUUGGGGm6ACAGCUCCAUGUUCCUUGGGGCG
Sequence (MODOMICS CODE ENCODING) GCUUUUCCGCCCCGGCUCUUCUUUUGUUGUCAAGUCCUUUUGAUAAAUGGUGGGGCUGGGAGCUCUGGGAGUCGGGAGCCAGUCUGUGCCCGCGUGGGGGGCGGGGGCCGAGCCUGGAGACCCGGUUUCGACCGGCGCGCACCUGGGGCUGAGCCGGGUGCGCGCGGGGGUCGGGUCUGGAACUGCCCUUGGUAUGCUCGCCCUCUCCUCUUGGCCCAUCUCACUCCCCUCCCCCACCUGACUCCCCUCCCCGGCUUCUUUCUCUGUCUCCCACUCCGCACGGGUACCGAGAACUUUCCGGGAAUCGACGGGAUUUCUCUGGCUGUCGUUUGCGCUGCAUUUAUCCGAAUACAUCCAGCUCGCAGGCAUCCUGCAAGAAACGGCUCCCGGCUCGCGUGUACGCCGACACCUCGGCCCAACGCAGG2000000006ACUCGAGGUGGUUUCUAGUGCCCGGGUGGCUGCAAGUCUGCCCUCCGAGGGAGGCUGG2000000006ACAAGCGGCGCCCCCAGGUCGAGCGGCCUCUCGCUGCCUGGCAGUGCCUGGCAGCCCCCACCUCUGCCAGUGCUUCGGAAACCCGCCUGGCCAGGUUCGCCCGCGGUGAAAAAUGAAAGCAAAUUCCCCAACAGAGGUAGCCGGA2000000006ACUUUCCUCGACGAAGGCUCCCUCCUGCGCCUGUGUCUGGAGAACCCCCAGAGCGCUGCAAGUUAGCAAGAGAGAUUCGAUGGCGGCUCUGGAAGGCGCACGAAGGGUGGGGCGGGGGAGCAAAGAGGCCACUGGGUGACCCAGCCUGGUCCGGGGUGAAACGCUAGAGAAGGCGCCUCGCCUUCCUUAUUUCAAUGCAACUCCUCGGCCCCAGACGGUAAAAAUAGUUUCCAAGCUGCCGCGG2000000006ACGCCCAGGAUGUGUUUGCAGAGAUCAA2000000006ACUGGGGAGGAGGCAGCUUUGUAAAAGUUGCAGAAAGAUUAGCCGAGAAGCGUCCGCCCGGCGGGGCUCAAGAAAGCUUGGGG2000000006ACAGCUCCAUGUUCCUUGGGGCG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 426 484 629 873 901 984
Modification Positions m6A m6A m6A m6A m6A m6A
Genomic Coordinates 10:75407378:+ 10:75407436:+ 10:75407581:+ 10:75407825:+ 10:75407853:+ 10:75407936:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
Yfn77uLS5tv8
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
JkWoGWVwjNda
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8