General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000377242
Gene ID:	ENSG00000120594
Gene Name:	PLXDC2
Sequence (UNICHARACTER ENCODING)	GGCGACGGCAGCGCCUCCUCCGCCACCAAACUCCUGGGGCUCCGCGGGGGCUUGGGGCCACCUCCUCCUGAGCCCGGAGGAACCCUCUCCCGAUAGGUUCCAGCGUGACUCCCUCCCACUCCACCCUUUUCCUUUCUUCUUCCUCUUUUUUUUUUUUUUUUUUAAACACAUUUUUUUCCUGGCUUCGGACCUCAGACUGCUGCAGCCCUAACCUUCCCAGGGCUCAGCUCUUUGGAGCUGCCCAUUCCUCCGGCUGCGAGAAAGGACGCGCGCCCUGCGUCGGGCGAAGAAAAGAAGCAAAACUUGUCGGGAGGGUUUCGUCAUCAACCUCCUUCCCGCAAACCUAAACCUCCUGCCGGGGCCAUCCCUAGACAGAGGAAAGUUCCUGCAGAGCCGACCAGCCCUAGUGGAUCUGGGGCAGGCAGCGGCGCUGGCUGUGGAAUUAGAUCUGUUUUGAACCCAGUGGAGCGCAUCGCUGGGGCUCGGAAGUCACCGUCCGCGGGCACCGGGUUGGCGCUGCCCGAGUGGAACCGACAGUUUGCGAGCCUCGGCUGCAAGUGGCCUCUCCUCCCCGCGGUUGUUGUUCAGUGUCGGGUGAGGGCUGCGAGUGUGGCAAGUUGCAAAGAGAGCCUCAGAGGUCCGAAGAGCGCUGCGCUCCUACUCGCGUUCGCUUCUUCCUCUUCUCGGUUCCCUACUGUGAAAUCGCAGCGACAUUUACAAAGGCCUCCGGGUCCUACCGAGACCGAUCCGCAGCGUUUGGCCCGGUCGUGCCUAUUGCAUCGGGAGCCCCCGAGCACCGGCGAAGGЖCUGGCGGGUGGGGUAGGGAGGUGGCGGCGGCGGCAUGGCGAGGUUCCCGAAGGCCGACCUGGCCGCUGCAGGAGUUAUGUUACUUUGCCACUUCUUCACGGACCAGUUUCAGUUCGCCGAUGGGAAACCCGGAGACCAAAUCCUUGAUUGGCAGUAUGGAGUUACUCAGGCCUUCCCUCACACAGAGGAGGAGGUGGAAGUUGAUUCACACGCGUACAGCCACAGGUGGAAAAGAAACUUGGACUUUCUCAAGGCGGUAGACACGAACCGAGCAAGCGUCGGCCAAGACUCUCCUGAGCCCAGAAGCUUCACAGACCUGCUGCUGGAUGAUGGGCAGGACAAUAACACUCAGAUCGAGAGAGUGAAUCUGUCCUUCGAUUUUCCAUUUUAUGGCCACUUCCUACGUGAAAUCACUGUGGCAACCGGGGGUUUCAUAUACACUGGAGAAGUCGUACAUCGAAUGCUAACAGCCACACAGUACAUAGCACCUUUAAUGGCAAAUUUCGAUCCCAGUGUAUCCAGAAAUUCAACUGUCAGAUAUUUUGAUAAUGGCACAGCACUUGUGGUCCAGUGGGACCAUGUACAUCUCCAGGAUAAUUAUAACCUGGGAAGCUUCACAUUCCAGGCAACCCUGCUCAUGGAUGGACGAAUCAUCUUUGGAUACAAAGAAAUUCCUGUCUUGGUCACACAGAUAAGUUCAACCAAUCAUCCAGUGAAAGUCGGACUGUCCGAUGCAUUUGUCGUUGUCCACAGGAUCCAACAAAUUCCCAAUGUUCGAAGAAGAACAAUUUAUGAAUACCACCGAGUAGAGCUACAAAUGUCAAAAAUUACCAACAUUUCGGCUGUGGAGAUGACCCCAUUACCCACAUGCCUCCAGUUUAACAGAUGUGGCCCCUGUGUAUCUUCUCAGAUUGGCUUCAACUGCAGUUGGUGUAGUAAACUUCAAAGAUGUUCCAGUGGAUUUGAUCGUCAUCGGCAGGACUGGGUGGACAGUGGAUGCCCUGAAGAGUCAAAAGAGAAGAUGUGUGAGAAUACAGAACCAGUGGAAACUUCUUCUCGAACCACCACAACCGUAGGAGCGACAACCACCCAGUUCAGGGUCCUAACUACCACCAGAAGAGCAGUGACUUCUCAGUUUCCCACCAGCCUCCCUACAGAAGAUGAUACCAAGAUAGCACUACAUCUAAAAGAUAAUGGAGCUUCUACAGAUGACAGUGCAGCUGAGAAGAAAGGGGGAACCCUCCACGCUGGCCUCAUCAUUGGAAUCCUCAUCCUGGUCCUCAUUGUAGCCACAGCCAUUCUUGUGACAGUCUAUAUGUAUCACCACCCAACAUCAGCAGCCAGCAUCUUCUUUAUUGAGAGACGCCCAAGCAGAUGGCCUGCGAUGAAGUUUAGAAGAGGCUCUGGACAUCCUGCCUAUGCUGAAGUUGAACCAGUUGGAGAGAAAGAAGGCUUUAUUGUAUCAGAGCAGUGCUAAAAUUUCUAGGЖCAGAACAACACCAGUACUGGUUUACAGGUGUUAAGЖCUAAAAUUUUGCCUAUACCUUUAAGACAAACAAACAAACACACACACAAACAAGCUCUAAGCUGCUGUAGCCUGAAGAAGACAAGAUUUCUGGACAAGCUCAGCCCAGGAAACAAAGGGUAAACAAAAAЖCUAAAЖCUUAUACAAGAUACCAUUUACACUGAACAUAGAAUUCCCUAGUGGAAUGUCAUCUAUAGUUCACUCGGAACAUCUCCCGUGGЖCUUAUCUGAAGUAUGACAAGAUUAUAAUGCUUUUGGCUUAGGUGCAGGGUUGCAAAGGGAUCAGAAAAAAAAAAUCAUAAUAAAGCUUUAGUUCAUGAGGGAUCGACACCUUUGGUUCAAAUGUUCUCUGAUGUCUCAAAGAUAЖCUGUUUUCCAAAGCCUGAACCCUUUCACUCAAAAGAGCAAUGAUGAAUGUCUCAAGAUUGCUAAGAAAAACAGCCCAUGCAAGAGUGAGAACAAACACAAAAUAAGAGAUUUUCUACAUUUUCAAAA
Sequence (SHORT NAMES ENCODING)	GGCGACGGCAGCGCCUCCUCCGCCACCAAACUCCUGGGGCUCCGCGGGGGCUUGGGGCCACCUCCUCCUGAGCCCGGAGGAACCCUCUCCCGAUAGGUUCCAGCGUGACUCCCUCCCACUCCACCCUUUUCCUUUCUUCUUCCUCUUUUUUUUUUUUUUUUUUAAACACAUUUUUUUCCUGGCUUCGGACCUCAGACUGCUGCAGCCCUAACCUUCCCAGGGCUCAGCUCUUUGGAGCUGCCCAUUCCUCCGGCUGCGAGAAAGGACGCGCGCCCUGCGUCGGGCGAAGAAAAGAAGCAAAACUUGUCGGGAGGGUUUCGUCAUCAACCUCCUUCCCGCAAACCUAAACCUCCUGCCGGGGCCAUCCCUAGACAGAGGAAAGUUCCUGCAGAGCCGACCAGCCCUAGUGGAUCUGGGGCAGGCAGCGGCGCUGGCUGUGGAAUUAGAUCUGUUUUGAACCCAGUGGAGCGCAUCGCUGGGGCUCGGAAGUCACCGUCCGCGGGCACCGGGUUGGCGCUGCCCGAGUGGAACCGACAGUUUGCGAGCCUCGGCUGCAAGUGGCCUCUCCUCCCCGCGGUUGUUGUUCAGUGUCGGGUGAGGGCUGCGAGUGUGGCAAGUUGCAAAGAGAGCCUCAGAGGUCCGAAGAGCGCUGCGCUCCUACUCGCGUUCGCUUCUUCCUCUUCUCGGUUCCCUACUGUGAAAUCGCAGCGACAUUUACAAAGGCCUCCGGGUCCUACCGAGACCGAUCCGCAGCGUUUGGCCCGGUCGUGCCUAUUGCAUCGGGAGCCCCCGAGCACCGGCGAAGGm6ACUGGCGGGUGGGGUAGGGAGGUGGCGGCGGCGGCAUGGCGAGGUUCCCGAAGGCCGACCUGGCCGCUGCAGGAGUUAUGUUACUUUGCCACUUCUUCACGGACCAGUUUCAGUUCGCCGAUGGGAAACCCGGAGACCAAAUCCUUGAUUGGCAGUAUGGAGUUACUCAGGCCUUCCCUCACACAGAGGAGGAGGUGGAAGUUGAUUCACACGCGUACAGCCACAGGUGGAAAAGAAACUUGGACUUUCUCAAGGCGGUAGACACGAACCGAGCAAGCGUCGGCCAAGACUCUCCUGAGCCCAGAAGCUUCACAGACCUGCUGCUGGAUGAUGGGCAGGACAAUAACACUCAGAUCGAGAGAGUGAAUCUGUCCUUCGAUUUUCCAUUUUAUGGCCACUUCCUACGUGAAAUCACUGUGGCAACCGGGGGUUUCAUAUACACUGGAGAAGUCGUACAUCGAAUGCUAACAGCCACACAGUACAUAGCACCUUUAAUGGCAAAUUUCGAUCCCAGUGUAUCCAGAAAUUCAACUGUCAGAUAUUUUGAUAAUGGCACAGCACUUGUGGUCCAGUGGGACCAUGUACAUCUCCAGGAUAAUUAUAACCUGGGAAGCUUCACAUUCCAGGCAACCCUGCUCAUGGAUGGACGAAUCAUCUUUGGAUACAAAGAAAUUCCUGUCUUGGUCACACAGAUAAGUUCAACCAAUCAUCCAGUGAAAGUCGGACUGUCCGAUGCAUUUGUCGUUGUCCACAGGAUCCAACAAAUUCCCAAUGUUCGAAGAAGAACAAUUUAUGAAUACCACCGAGUAGAGCUACAAAUGUCAAAAAUUACCAACAUUUCGGCUGUGGAGAUGACCCCAUUACCCACAUGCCUCCAGUUUAACAGAUGUGGCCCCUGUGUAUCUUCUCAGAUUGGCUUCAACUGCAGUUGGUGUAGUAAACUUCAAAGAUGUUCCAGUGGAUUUGAUCGUCAUCGGCAGGACUGGGUGGACAGUGGAUGCCCUGAAGAGUCAAAAGAGAAGAUGUGUGAGAAUACAGAACCAGUGGAAACUUCUUCUCGAACCACCACAACCGUAGGAGCGACAACCACCCAGUUCAGGGUCCUAACUACCACCAGAAGAGCAGUGACUUCUCAGUUUCCCACCAGCCUCCCUACAGAAGAUGAUACCAAGAUAGCACUACAUCUAAAAGAUAAUGGAGCUUCUACAGAUGACAGUGCAGCUGAGAAGAAAGGGGGAACCCUCCACGCUGGCCUCAUCAUUGGAAUCCUCAUCCUGGUCCUCAUUGUAGCCACAGCCAUUCUUGUGACAGUCUAUAUGUAUCACCACCCAACAUCAGCAGCCAGCAUCUUCUUUAUUGAGAGACGCCCAAGCAGAUGGCCUGCGAUGAAGUUUAGAAGAGGCUCUGGACAUCCUGCCUAUGCUGAAGUUGAACCAGUUGGAGAGAAAGAAGGCUUUAUUGUAUCAGAGCAGUGCUAAAAUUUCUAGGm6ACAGAACAACACCAGUACUGGUUUACAGGUGUUAAGm6ACUAAAAUUUUGCCUAUACCUUUAAGACAAACAAACAAACACACACACAAACAAGCUCUAAGCUGCUGUAGCCUGAAGAAGACAAGAUUUCUGGACAAGCUCAGCCCAGGAAACAAAGGGUAAACAAAAAm6ACUAAAm6ACUUAUACAAGAUACCAUUUACACUGAACAUAGAAUUCCCUAGUGGAAUGUCAUCUAUAGUUCACUCGGAACAUCUCCCGUGGm6ACUUAUCUGAAGUAUGACAAGAUUAUAAUGCUUUUGGCUUAGGUGCAGGGUUGCAAAGGGAUCAGAAAAAAAAAAUCAUAAUAAAGCUUUAGUUCAUGAGGGAUCGACACCUUUGGUUCAAAUGUUCUCUGAUGUCUCAAAGAUAm6ACUGUUUUCCAAAGCCUGAACCCUUUCACUCAAAAGAGCAAUGAUGAAUGUCUCAAGAUUGCUAAGAAAAACAGCCCAUGCAAGAGUGAGAACAAACACAAAAUAAGAGAUUUUCUACAUUUUCAAAA
Sequence (MODOMICS CODE ENCODING)	GGCGACGGCAGCGCCUCCUCCGCCACCAAACUCCUGGGGCUCCGCGGGGGCUUGGGGCCACCUCCUCCUGAGCCCGGAGGAACCCUCUCCCGAUAGGUUCCAGCGUGACUCCCUCCCACUCCACCCUUUUCCUUUCUUCUUCCUCUUUUUUUUUUUUUUUUUUAAACACAUUUUUUUCCUGGCUUCGGACCUCAGACUGCUGCAGCCCUAACCUUCCCAGGGCUCAGCUCUUUGGAGCUGCCCAUUCCUCCGGCUGCGAGAAAGGACGCGCGCCCUGCGUCGGGCGAAGAAAAGAAGCAAAACUUGUCGGGAGGGUUUCGUCAUCAACCUCCUUCCCGCAAACCUAAACCUCCUGCCGGGGCCAUCCCUAGACAGAGGAAAGUUCCUGCAGAGCCGACCAGCCCUAGUGGAUCUGGGGCAGGCAGCGGCGCUGGCUGUGGAAUUAGAUCUGUUUUGAACCCAGUGGAGCGCAUCGCUGGGGCUCGGAAGUCACCGUCCGCGGGCACCGGGUUGGCGCUGCCCGAGUGGAACCGACAGUUUGCGAGCCUCGGCUGCAAGUGGCCUCUCCUCCCCGCGGUUGUUGUUCAGUGUCGGGUGAGGGCUGCGAGUGUGGCAAGUUGCAAAGAGAGCCUCAGAGGUCCGAAGAGCGCUGCGCUCCUACUCGCGUUCGCUUCUUCCUCUUCUCGGUUCCCUACUGUGAAAUCGCAGCGACAUUUACAAAGGCCUCCGGGUCCUACCGAGACCGAUCCGCAGCGUUUGGCCCGGUCGUGCCUAUUGCAUCGGGAGCCCCCGAGCACCGGCGAAGG2000000006ACUGGCGGGUGGGGUAGGGAGGUGGCGGCGGCGGCAUGGCGAGGUUCCCGAAGGCCGACCUGGCCGCUGCAGGAGUUAUGUUACUUUGCCACUUCUUCACGGACCAGUUUCAGUUCGCCGAUGGGAAACCCGGAGACCAAAUCCUUGAUUGGCAGUAUGGAGUUACUCAGGCCUUCCCUCACACAGAGGAGGAGGUGGAAGUUGAUUCACACGCGUACAGCCACAGGUGGAAAAGAAACUUGGACUUUCUCAAGGCGGUAGACACGAACCGAGCAAGCGUCGGCCAAGACUCUCCUGAGCCCAGAAGCUUCACAGACCUGCUGCUGGAUGAUGGGCAGGACAAUAACACUCAGAUCGAGAGAGUGAAUCUGUCCUUCGAUUUUCCAUUUUAUGGCCACUUCCUACGUGAAAUCACUGUGGCAACCGGGGGUUUCAUAUACACUGGAGAAGUCGUACAUCGAAUGCUAACAGCCACACAGUACAUAGCACCUUUAAUGGCAAAUUUCGAUCCCAGUGUAUCCAGAAAUUCAACUGUCAGAUAUUUUGAUAAUGGCACAGCACUUGUGGUCCAGUGGGACCAUGUACAUCUCCAGGAUAAUUAUAACCUGGGAAGCUUCACAUUCCAGGCAACCCUGCUCAUGGAUGGACGAAUCAUCUUUGGAUACAAAGAAAUUCCUGUCUUGGUCACACAGAUAAGUUCAACCAAUCAUCCAGUGAAAGUCGGACUGUCCGAUGCAUUUGUCGUUGUCCACAGGAUCCAACAAAUUCCCAAUGUUCGAAGAAGAACAAUUUAUGAAUACCACCGAGUAGAGCUACAAAUGUCAAAAAUUACCAACAUUUCGGCUGUGGAGAUGACCCCAUUACCCACAUGCCUCCAGUUUAACAGAUGUGGCCCCUGUGUAUCUUCUCAGAUUGGCUUCAACUGCAGUUGGUGUAGUAAACUUCAAAGAUGUUCCAGUGGAUUUGAUCGUCAUCGGCAGGACUGGGUGGACAGUGGAUGCCCUGAAGAGUCAAAAGAGAAGAUGUGUGAGAAUACAGAACCAGUGGAAACUUCUUCUCGAACCACCACAACCGUAGGAGCGACAACCACCCAGUUCAGGGUCCUAACUACCACCAGAAGAGCAGUGACUUCUCAGUUUCCCACCAGCCUCCCUACAGAAGAUGAUACCAAGAUAGCACUACAUCUAAAAGAUAAUGGAGCUUCUACAGAUGACAGUGCAGCUGAGAAGAAAGGGGGAACCCUCCACGCUGGCCUCAUCAUUGGAAUCCUCAUCCUGGUCCUCAUUGUAGCCACAGCCAUUCUUGUGACAGUCUAUAUGUAUCACCACCCAACAUCAGCAGCCAGCAUCUUCUUUAUUGAGAGACGCCCAAGCAGAUGGCCUGCGAUGAAGUUUAGAAGAGGCUCUGGACAUCCUGCCUAUGCUGAAGUUGAACCAGUUGGAGAGAAAGAAGGCUUUAUUGUAUCAGAGCAGUGCUAAAAUUUCUAGG2000000006ACAGAACAACACCAGUACUGGUUUACAGGUGUUAAG2000000006ACUAAAAUUUUGCCUAUACCUUUAAGACAAACAAACAAACACACACACAAACAAGCUCUAAGCUGCUGUAGCCUGAAGAAGACAAGAUUUCUGGACAAGCUCAGCCCAGGAAACAAAGGGUAAACAAAAA2000000006ACUAAA2000000006ACUUAUACAAGAUACCAUUUACACUGAACAUAGAAUUCCCUAGUGGAAUGUCAUCUAUAGUUCACUCGGAACAUCUCCCGUGG2000000006ACUUAUCUGAAGUAUGACAAGAUUAUAAUGCUUUUGGCUUAGGUGCAGGGUUGCAAAGGGAUCAGAAAAAAAAAAUCAUAAUAAAGCUUUAGUUCAUGAGGGAUCGACACCUUUGGUUCAAAUGUUCUCUGAUGUCUCAAAGAUA2000000006ACUGUUUUCCAAAGCCUGAACCCUUUCACUCAAAAGAGCAAUGAUGAAUGUCUCAAGAUUGCUAAGAAAAACAGCCCAUGCAAGAGUGAGAACAAACACAAAAUAAGAGAUUUUCUACAUUUUCAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	807	2295	2331	2461	2467	2550	2695
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	10:19817045:+	10:20279830:+	10:20279866:+	10:20279996:+	10:20280002:+	10:20280085:+	10:20280230:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL ArijeGVTwYBw WiQcrNTGZHPT	msuJfBpJvM5H VyCX26p5UBRL WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	Lny8GcCeVGc9 UKen6WEino9G	KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	msuJfBpJvM5H KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G