Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000339310
Gene ID: ENSG00000166169
Gene Name: POLL
Sequence (UNICHARACTER ENCODING) GGUUGGAGAGЖCUCUUGGGGCCGGGGUCGGGCACUCCAGCUUUCUUCUAGCCCCGAGCUGGGAUUCCCUGGCCUGCGCCAGCUGCGUACACGGCGAGUACACCGCACCUGCCCGGGACUUCACCCGCAGCUGCGAGACUCCUCCAUUCCCGGAGGGCUCCCCACACCUGCUGCGGCCGUGCCCCAUCUCCCCGCAGCUGCGGCGCUGAGCACCCCCAUGUCGAGAGGCUGAGACCAGGACAGGUGCAGGGCGUUCCCACUCACCCCCGAAAGUCCUCCUCCUUCCUCUGCGAGUCUGUGUUGGAGGUAGAGAAAUAGUAUGUGGGGUUUAUGUGCAGGUCCUCCCCAGGCUCCGCUCCAUCCCCUAAAGCUCCAUUUCCUAGCCCAGCAUCCCAUUUGGUAAAGCCCUUCGAAGUGGGCCGCAGCAGGGCUGUGCUGAAUCUUUAGCGCAACCCCUCUGAGGAAUGGUGUCGUUUCCUACUCCUCAAAAGUACCCCCGAUGGCACCAGCCUUCCCCUCAUUUCCCGUAAUACUCCAACUUCGAAAGGCUGGGGAGUGUGAAGCUAGGCUAAACCACUGAAGUUUAACCGGGUUUGAAGAGACCCCCUCCCCCGACCCGCUUCCCCAAACUGGGCUGCUACCCCCAAAGCCUGGUCAGGAAAGACCCUACCUCCAUAGGCAAAGGGGUUGGAGGGCCUCAAUUCUGGAUUUCCACGUGCAGCAGCCCUGACCAACGCUCCAAUAGGCCGGGAUCCAGCCAUACUUCAAUGGAUCCCAGGGGUAUCUUGAAGGCAUUUCCCAAGCGGCAGAAAAUUCAUGCUGAUGCAUCAUCAAAAGUACUUGCAAAGAUUCCUAGGAGGGAAGAGGGAGAAGAAGCAGAAGGAGGCCUGCAGUAUCCCUGGGAUUGGGAAGCGGAUGGCUGAGAAAAUCAUAGAGAUCCUGGAGAGCGGGCAUUUGCGGAAGCUGGACCAUAUCAGUGAGAGCGUGCCUGUCUUGGAGCUCUUCUCCAACAUCUGGGGAGCUGGGACCAAGACUGCCCAGAUGUGGUACCAACAGGGCUUCCGAAGUCUGGAAGACAPCCGCAGCCAGGCCUCCCUGACAACCCAGCAGGCCAUCGGCCUGAAGCAUUACAGUGACUUCCUGGAACGUAUGCCCAGGGAGGAGGCUACAGAGAUUGAGCAGACAGUCCAGAAAGCAGCCCAGGCCUPUAACUCUGGGCUGCUGUGUGUGGCAUGUGGUUCAUACCGACGGGGAAAGGCGACCUGUGGUGAUGUCGACGUGCUCAUCACUCACCCAGAUGGCCGGUCCCACCGGGGUAUCUUCAGCCGCCUCCUUGACAGUCUUCGGCAGGAAGGGUUCCUCACAGAUGACUUGGUGAGCCAAGAGGAGAAUGGUCAGCAACAGAAGUACUUGGGGGUGUGCCGGCUCCCAGGGCCAGGGCGGCGGCACCGGCGCCUGGЖCAUCAUCGUGGUGCCCUAUAGCGAGUUUGCCUGUGCCCUGCUCUACUUCACCGGCUCUGCACACUUCAACCGCUCCAUGCGAGCCCUGGCCAAAACCAAGGGCAUGAGUCUGUCAGAACAUGCCCUCAGCACUGCUGUGGUCCGGAACACCCAUGGCUGCAAGGUGGGGCCUGGCCGAGUGCUGCCCACUCCCACUGAGAAGGAUGUCUUCAGGCUCUUAGGCCUCCCCUACCGAGAACCUGCUGAGCGGGЖCUGGUGACCCAUGGCUGGGGGUGCUGAGGAGAGCCGAGUUGGЖCUGGCUACCCCPCCUGGCCACCCAGUACUCCCPCCAGCCUCAGCUGGCUGAACCUCGCCGCUCCAACCACCAGCUUCCUCAGCGAGCAGGGCCCAGGGCUCUGGGCCUGAAGCAAGAGCCAGCCCGGCUCCCAGUGUCUGCCCGGCUCCCAGUGUCUGCCCAGCCCUCUCCCAGACAGGAGCAGGCUGCCACCCCUUCUACCUCACCACUGCCCCUCGAAGAAUUUUGCAAAUGGCCCCUUGCCCCAUUUUAAGCAGGAGCAGGUGGCUGGUUUGAAGCCCCAGGUAUCCCCCUUCCCUGCUAUGGGAAAGGCCAAGCUGCUGGGUGGGGACAGAAGCUGCAGGGGAGAGGGAAGCAGCCGUGCUGUCAACAUCAPCCGGCACCCUCUGGGGUAGGAGAЖCAGCCAUUCCACAUGUGUUCCCUCUAUCCGUCCUGCUUCCUGGGCAGCUGGUGGUGCUGGGAAUGGGGUGCCCCAGCCUUGGUGAGGЖCAGUGUUGGGAGGCCCAGGGGCCCAGUAAAGUGCAUPUGACAUUGAA
Sequence (SHORT NAMES ENCODING) GGUUGGAGAGm6ACUCUUGGGGCCGGGGUCGGGCACUCCAGCUUUCUUCUAGCCCCGAGCUGGGAUUCCCUGGCCUGCGCCAGCUGCGUACACGGCGAGUACACCGCACCUGCCCGGGACUUCACCCGCAGCUGCGAGACUCCUCCAUUCCCGGAGGGCUCCCCACACCUGCUGCGGCCGUGCCCCAUCUCCCCGCAGCUGCGGCGCUGAGCACCCCCAUGUCGAGAGGCUGAGACCAGGACAGGUGCAGGGCGUUCCCACUCACCCCCGAAAGUCCUCCUCCUUCCUCUGCGAGUCUGUGUUGGAGGUAGAGAAAUAGUAUGUGGGGUUUAUGUGCAGGUCCUCCCCAGGCUCCGCUCCAUCCCCUAAAGCUCCAUUUCCUAGCCCAGCAUCCCAUUUGGUAAAGCCCUUCGAAGUGGGCCGCAGCAGGGCUGUGCUGAAUCUUUAGCGCAACCCCUCUGAGGAAUGGUGUCGUUUCCUACUCCUCAAAAGUACCCCCGAUGGCACCAGCCUUCCCCUCAUUUCCCGUAAUACUCCAACUUCGAAAGGCUGGGGAGUGUGAAGCUAGGCUAAACCACUGAAGUUUAACCGGGUUUGAAGAGACCCCCUCCCCCGACCCGCUUCCCCAAACUGGGCUGCUACCCCCAAAGCCUGGUCAGGAAAGACCCUACCUCCAUAGGCAAAGGGGUUGGAGGGCCUCAAUUCUGGAUUUCCACGUGCAGCAGCCCUGACCAACGCUCCAAUAGGCCGGGAUCCAGCCAUACUUCAAUGGAUCCCAGGGGUAUCUUGAAGGCAUUUCCCAAGCGGCAGAAAAUUCAUGCUGAUGCAUCAUCAAAAGUACUUGCAAAGAUUCCUAGGAGGGAAGAGGGAGAAGAAGCAGAAGGAGGCCUGCAGUAUCCCUGGGAUUGGGAAGCGGAUGGCUGAGAAAAUCAUAGAGAUCCUGGAGAGCGGGCAUUUGCGGAAGCUGGACCAUAUCAGUGAGAGCGUGCCUGUCUUGGAGCUCUUCUCCAACAUCUGGGGAGCUGGGACCAAGACUGCCCAGAUGUGGUACCAACAGGGCUUCCGAAGUCUGGAAGACAYCCGCAGCCAGGCCUCCCUGACAACCCAGCAGGCCAUCGGCCUGAAGCAUUACAGUGACUUCCUGGAACGUAUGCCCAGGGAGGAGGCUACAGAGAUUGAGCAGACAGUCCAGAAAGCAGCCCAGGCCUYUAACUCUGGGCUGCUGUGUGUGGCAUGUGGUUCAUACCGACGGGGAAAGGCGACCUGUGGUGAUGUCGACGUGCUCAUCACUCACCCAGAUGGCCGGUCCCACCGGGGUAUCUUCAGCCGCCUCCUUGACAGUCUUCGGCAGGAAGGGUUCCUCACAGAUGACUUGGUGAGCCAAGAGGAGAAUGGUCAGCAACAGAAGUACUUGGGGGUGUGCCGGCUCCCAGGGCCAGGGCGGCGGCACCGGCGCCUGGm6ACAUCAUCGUGGUGCCCUAUAGCGAGUUUGCCUGUGCCCUGCUCUACUUCACCGGCUCUGCACACUUCAACCGCUCCAUGCGAGCCCUGGCCAAAACCAAGGGCAUGAGUCUGUCAGAACAUGCCCUCAGCACUGCUGUGGUCCGGAACACCCAUGGCUGCAAGGUGGGGCCUGGCCGAGUGCUGCCCACUCCCACUGAGAAGGAUGUCUUCAGGCUCUUAGGCCUCCCCUACCGAGAACCUGCUGAGCGGGm6ACUGGUGACCCAUGGCUGGGGGUGCUGAGGAGAGCCGAGUUGGm6ACUGGCUACCCCYCCUGGCCACCCAGUACUCCCYCCAGCCUCAGCUGGCUGAACCUCGCCGCUCCAACCACCAGCUUCCUCAGCGAGCAGGGCCCAGGGCUCUGGGCCUGAAGCAAGAGCCAGCCCGGCUCCCAGUGUCUGCCCGGCUCCCAGUGUCUGCCCAGCCCUCUCCCAGACAGGAGCAGGCUGCCACCCCUUCUACCUCACCACUGCCCCUCGAAGAAUUUUGCAAAUGGCCCCUUGCCCCAUUUUAAGCAGGAGCAGGUGGCUGGUUUGAAGCCCCAGGUAUCCCCCUUCCCUGCUAUGGGAAAGGCCAAGCUGCUGGGUGGGGACAGAAGCUGCAGGGGAGAGGGAAGCAGCCGUGCUGUCAACAUCAYCCGGCACCCUCUGGGGUAGGAGAm6ACAGCCAUUCCACAUGUGUUCCCUCUAUCCGUCCUGCUUCCUGGGCAGCUGGUGGUGCUGGGAAUGGGGUGCCCCAGCCUUGGUGAGGm6ACAGUGUUGGGAGGCCCAGGGGCCCAGUAAAGUGCAUYUGACAUUGAA
Sequence (MODOMICS CODE ENCODING) GGUUGGAGAG2000000006ACUCUUGGGGCCGGGGUCGGGCACUCCAGCUUUCUUCUAGCCCCGAGCUGGGAUUCCCUGGCCUGCGCCAGCUGCGUACACGGCGAGUACACCGCACCUGCCCGGGACUUCACCCGCAGCUGCGAGACUCCUCCAUUCCCGGAGGGCUCCCCACACCUGCUGCGGCCGUGCCCCAUCUCCCCGCAGCUGCGGCGCUGAGCACCCCCAUGUCGAGAGGCUGAGACCAGGACAGGUGCAGGGCGUUCCCACUCACCCCCGAAAGUCCUCCUCCUUCCUCUGCGAGUCUGUGUUGGAGGUAGAGAAAUAGUAUGUGGGGUUUAUGUGCAGGUCCUCCCCAGGCUCCGCUCCAUCCCCUAAAGCUCCAUUUCCUAGCCCAGCAUCCCAUUUGGUAAAGCCCUUCGAAGUGGGCCGCAGCAGGGCUGUGCUGAAUCUUUAGCGCAACCCCUCUGAGGAAUGGUGUCGUUUCCUACUCCUCAAAAGUACCCCCGAUGGCACCAGCCUUCCCCUCAUUUCCCGUAAUACUCCAACUUCGAAAGGCUGGGGAGUGUGAAGCUAGGCUAAACCACUGAAGUUUAACCGGGUUUGAAGAGACCCCCUCCCCCGACCCGCUUCCCCAAACUGGGCUGCUACCCCCAAAGCCUGGUCAGGAAAGACCCUACCUCCAUAGGCAAAGGGGUUGGAGGGCCUCAAUUCUGGAUUUCCACGUGCAGCAGCCCUGACCAACGCUCCAAUAGGCCGGGAUCCAGCCAUACUUCAAUGGAUCCCAGGGGUAUCUUGAAGGCAUUUCCCAAGCGGCAGAAAAUUCAUGCUGAUGCAUCAUCAAAAGUACUUGCAAAGAUUCCUAGGAGGGAAGAGGGAGAAGAAGCAGAAGGAGGCCUGCAGUAUCCCUGGGAUUGGGAAGCGGAUGGCUGAGAAAAUCAUAGAGAUCCUGGAGAGCGGGCAUUUGCGGAAGCUGGACCAUAUCAGUGAGAGCGUGCCUGUCUUGGAGCUCUUCUCCAACAUCUGGGGAGCUGGGACCAAGACUGCCCAGAUGUGGUACCAACAGGGCUUCCGAAGUCUGGAAGACA2000000009UCCGCAGCCAGGCCUCCCUGACAACCCAGCAGGCCAUCGGCCUGAAGCAUUACAGUGACUUCCUGGAACGUAUGCCCAGGGAGGAGGCUACAGAGAUUGAGCAGACAGUCCAGAAAGCAGCCCAGGCCU2000000009UUAACUCUGGGCUGCUGUGUGUGGCAUGUGGUUCAUACCGACGGGGAAAGGCGACCUGUGGUGAUGUCGACGUGCUCAUCACUCACCCAGAUGGCCGGUCCCACCGGGGUAUCUUCAGCCGCCUCCUUGACAGUCUUCGGCAGGAAGGGUUCCUCACAGAUGACUUGGUGAGCCAAGAGGAGAAUGGUCAGCAACAGAAGUACUUGGGGGUGUGCCGGCUCCCAGGGCCAGGGCGGCGGCACCGGCGCCUGG2000000006ACAUCAUCGUGGUGCCCUAUAGCGAGUUUGCCUGUGCCCUGCUCUACUUCACCGGCUCUGCACACUUCAACCGCUCCAUGCGAGCCCUGGCCAAAACCAAGGGCAUGAGUCUGUCAGAACAUGCCCUCAGCACUGCUGUGGUCCGGAACACCCAUGGCUGCAAGGUGGGGCCUGGCCGAGUGCUGCCCACUCCCACUGAGAAGGAUGUCUUCAGGCUCUUAGGCCUCCCCUACCGAGAACCUGCUGAGCGGG2000000006ACUGGUGACCCAUGGCUGGGGGUGCUGAGGAGAGCCGAGUUGG2000000006ACUGGCUACCCC2000000009UCCUGGCCACCCAGUACUCCC2000000009UCCAGCCUCAGCUGGCUGAACCUCGCCGCUCCAACCACCAGCUUCCUCAGCGAGCAGGGCCCAGGGCUCUGGGCCUGAAGCAAGAGCCAGCCCGGCUCCCAGUGUCUGCCCGGCUCCCAGUGUCUGCCCAGCCCUCUCCCAGACAGGAGCAGGCUGCCACCCCUUCUACCUCACCACUGCCCCUCGAAGAAUUUUGCAAAUGGCCCCUUGCCCCAUUUUAAGCAGGAGCAGGUGGCUGGUUUGAAGCCCCAGGUAUCCCCCUUCCCUGCUAUGGGAAAGGCCAAGCUGCUGGGUGGGGACAGAAGCUGCAGGGGAGAGGGAAGCAGCCGUGCUGUCAACAUCA2000000009UCCGGCACCCUCUGGGGUAGGAGA2000000006ACAGCCAUUCCACAUGUGUUCCCUCUAUCCGUCCUGCUUCCUGGGCAGCUGGUGGUGCUGGGAAUGGGGUGCCCCAGCCUUGGUGAGG2000000006ACAGUGUUGGGAGGCCCAGGGGCCCAGUAAAGUGCAU2000000009UUGACAUUGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 11 1078 1207 1459 1711 1754 1766 1787 2130 2154 2242 2279
Modification Positions m6A Y Y m6A m6A m6A Y Y Y m6A m6A Y
Genomic Coordinates 10:101588116:- 10:101582869:- 10:101580394:- 10:101579712:- 10:101579460:- 10:101579417:- 10:101579405:- 10:101579384:- 10:101579041:- 10:101579017:- 10:101578929:- 10:101578892:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
BtsJQJ3DteUq
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
msuJfBpJvM5H
UN3tNpbCPHYf
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8