General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000482496
Gene ID:	ENSG00000165650
Gene Name:	PDZD8
Sequence (UNICHARACTER ENCODING)	UUUUAAACAUGCCCAUACAAUUAAAGAGAUAUUUGAGGAGAUGAUACCUAUAUUCUAAGAACUACUGCCAGGGUUGAAUUAAUAAAAGGAAAUUUACAAAGUGUUGGACUUACACUUCGUCUUGUCCAGUCAACUGAUGGGUAUGCUGGGCACGUCAUCAUUGAAACUGUGGCUCCAAACUCGCCUGCUGCAAUUGCAGAUCUUCAGCGGGGAGAUCGACUUAUCGCCAUUGGAGGUGUGAAAAUCACAUCAACACUGCAAGUGUUGAAGCUUAUCAAGCAGGCUGGUGACCGAGUCCUGGUGUACUAUGAAAGGCCUGUUGGCCAGAGUAAUCAAGGUGCAGUGCUGCAAGAUAЖCUUUGGCCAGUUGGAAGAAAACUUUUUGUCAAGCUCAUGCCAAUCGGGUUAUGAAGAGGAAGCUGCCGGGUUGACAGUAGAUACUGAAAGUAGAGAGCUGGAUUCUGAAUUUGAAGЖCUUGGCAAGUGAUGUCAGAGCACAAAAUGAGUUCAAAGAUGAGGCACAAUCAUUAAGUCAUAGUCCCAAACGUGUUCCAACAACACUUUCUAUUAAACCCCUUGGAGCUAUAUCACCAGUUUUAAACCGUAAAUUAGCUGUAGGAAGUCACCCACUACCACCGAAAAUUCAGUCCAAAGAUGGAAAUAAACCUCCACCCCUAAAAACUUCUGAGAUAACAGЖCCCAGCACAAGUGUCAAAACCAACCCAAGGAUCUGCUUUCAAЖCCACCUGUGCCACCACGACCACAAGCGAAAGUUCCUUUGCCUUCCGCCGAUGCUCCAAAUCAGGCAGAACCAGAUGUUCUCGUUGAAAAGCCAGAGAAGGUGGUGCCACCUCCUCUUGUAGAUAAAUCUGCUGAAAAGCAAGCAAAAAAUGUGGAUGCCAUAGЖCGAUGCAGCUGCACCUAAGCAAUUUUUAGCAAAGCAAGAAGUGGCCAAAGAUGUCACUUCAGAAACUUCCUGCCCUACUAAGGЖCAGUUCGGACGACCGUCAAACAUGGGAAUCAUCAGAAAUUCUUUAUCGUAAUAAGCUAGGAAAAUGGЖCAAGAACCAGAGCAPCCUGUUUGUUUGACAUAGAAGCCUGUCACAGGUACUUAAACAUUGCAUUGUGGUGCAGGGAUCCUUUCAAGUUGGGAGGUCUCAUCUGUUUGGGGCAUGUUAGUUUAAAЖCUUGAAGAUGUGGCUPUAGGAUGCCUAGCUACAUCAAACACGGAAUACCUUUCCAAAUUGAGЖCUGGAAGCCCCCUCACCUAAGGCUAUAGUCACUAGAЖCCGCACUACGCAAUCUGAGUAUGCAAAAGGGAUUCAAUGACAAAUUUUGCUAUGGUGЖCAUUACUAUUCACUUCAAAUAUUUGAAAGAAGGAGAAUCAGACCACCAUGUAGUUACUAACGU
Sequence (SHORT NAMES ENCODING)	UUUUAAACAUGCCCAUACAAUUAAAGAGAUAUUUGAGGAGAUGAUACCUAUAUUCUAAGAACUACUGCCAGGGUUGAAUUAAUAAAAGGAAAUUUACAAAGUGUUGGACUUACACUUCGUCUUGUCCAGUCAACUGAUGGGUAUGCUGGGCACGUCAUCAUUGAAACUGUGGCUCCAAACUCGCCUGCUGCAAUUGCAGAUCUUCAGCGGGGAGAUCGACUUAUCGCCAUUGGAGGUGUGAAAAUCACAUCAACACUGCAAGUGUUGAAGCUUAUCAAGCAGGCUGGUGACCGAGUCCUGGUGUACUAUGAAAGGCCUGUUGGCCAGAGUAAUCAAGGUGCAGUGCUGCAAGAUAm6ACUUUGGCCAGUUGGAAGAAAACUUUUUGUCAAGCUCAUGCCAAUCGGGUUAUGAAGAGGAAGCUGCCGGGUUGACAGUAGAUACUGAAAGUAGAGAGCUGGAUUCUGAAUUUGAAGm6ACUUGGCAAGUGAUGUCAGAGCACAAAAUGAGUUCAAAGAUGAGGCACAAUCAUUAAGUCAUAGUCCCAAACGUGUUCCAACAACACUUUCUAUUAAACCCCUUGGAGCUAUAUCACCAGUUUUAAACCGUAAAUUAGCUGUAGGAAGUCACCCACUACCACCGAAAAUUCAGUCCAAAGAUGGAAAUAAACCUCCACCCCUAAAAACUUCUGAGAUAACAGm6ACCCAGCACAAGUGUCAAAACCAACCCAAGGAUCUGCUUUCAAm6ACCACCUGUGCCACCACGACCACAAGCGAAAGUUCCUUUGCCUUCCGCCGAUGCUCCAAAUCAGGCAGAACCAGAUGUUCUCGUUGAAAAGCCAGAGAAGGUGGUGCCACCUCCUCUUGUAGAUAAAUCUGCUGAAAAGCAAGCAAAAAAUGUGGAUGCCAUAGm6ACGAUGCAGCUGCACCUAAGCAAUUUUUAGCAAAGCAAGAAGUGGCCAAAGAUGUCACUUCAGAAACUUCCUGCCCUACUAAGGm6ACAGUUCGGACGACCGUCAAACAUGGGAAUCAUCAGAAAUUCUUUAUCGUAAUAAGCUAGGAAAAUGGm6ACAAGAACCAGAGCAYCCUGUUUGUUUGACAUAGAAGCCUGUCACAGGUACUUAAACAUUGCAUUGUGGUGCAGGGAUCCUUUCAAGUUGGGAGGUCUCAUCUGUUUGGGGCAUGUUAGUUUAAAm6ACUUGAAGAUGUGGCUYUAGGAUGCCUAGCUACAUCAAACACGGAAUACCUUUCCAAAUUGAGm6ACUGGAAGCCCCCUCACCUAAGGCUAUAGUCACUAGAm6ACCGCACUACGCAAUCUGAGUAUGCAAAAGGGAUUCAAUGACAAAUUUUGCUAUGGUGm6ACAUUACUAUUCACUUCAAAUAUUUGAAAGAAGGAGAAUCAGACCACCAUGUAGUUACUAACGU
Sequence (MODOMICS CODE ENCODING)	UUUUAAACAUGCCCAUACAAUUAAAGAGAUAUUUGAGGAGAUGAUACCUAUAUUCUAAGAACUACUGCCAGGGUUGAAUUAAUAAAAGGAAAUUUACAAAGUGUUGGACUUACACUUCGUCUUGUCCAGUCAACUGAUGGGUAUGCUGGGCACGUCAUCAUUGAAACUGUGGCUCCAAACUCGCCUGCUGCAAUUGCAGAUCUUCAGCGGGGAGAUCGACUUAUCGCCAUUGGAGGUGUGAAAAUCACAUCAACACUGCAAGUGUUGAAGCUUAUCAAGCAGGCUGGUGACCGAGUCCUGGUGUACUAUGAAAGGCCUGUUGGCCAGAGUAAUCAAGGUGCAGUGCUGCAAGAUA2000000006ACUUUGGCCAGUUGGAAGAAAACUUUUUGUCAAGCUCAUGCCAAUCGGGUUAUGAAGAGGAAGCUGCCGGGUUGACAGUAGAUACUGAAAGUAGAGAGCUGGAUUCUGAAUUUGAAG2000000006ACUUGGCAAGUGAUGUCAGAGCACAAAAUGAGUUCAAAGAUGAGGCACAAUCAUUAAGUCAUAGUCCCAAACGUGUUCCAACAACACUUUCUAUUAAACCCCUUGGAGCUAUAUCACCAGUUUUAAACCGUAAAUUAGCUGUAGGAAGUCACCCACUACCACCGAAAAUUCAGUCCAAAGAUGGAAAUAAACCUCCACCCCUAAAAACUUCUGAGAUAACAG2000000006ACCCAGCACAAGUGUCAAAACCAACCCAAGGAUCUGCUUUCAA2000000006ACCACCUGUGCCACCACGACCACAAGCGAAAGUUCCUUUGCCUUCCGCCGAUGCUCCAAAUCAGGCAGAACCAGAUGUUCUCGUUGAAAAGCCAGAGAAGGUGGUGCCACCUCCUCUUGUAGAUAAAUCUGCUGAAAAGCAAGCAAAAAAUGUGGAUGCCAUAG2000000006ACGAUGCAGCUGCACCUAAGCAAUUUUUAGCAAAGCAAGAAGUGGCCAAAGAUGUCACUUCAGAAACUUCCUGCCCUACUAAGG2000000006ACAGUUCGGACGACCGUCAAACAUGGGAAUCAUCAGAAAUUCUUUAUCGUAAUAAGCUAGGAAAAUGG2000000006ACAAGAACCAGAGCA2000000009UCCUGUUUGUUUGACAUAGAAGCCUGUCACAGGUACUUAAACAUUGCAUUGUGGUGCAGGGAUCCUUUCAAGUUGGGAGGUCUCAUCUGUUUGGGGCAUGUUAGUUUAAA2000000006ACUUGAAGAUGUGGCU2000000009UUAGGAUGCCUAGCUACAUCAAACACGGAAUACCUUUCCAAAUUGAG2000000006ACUGGAAGCCCCCUCACCUAAGGCUAUAGUCACUAGA2000000006ACCGCACUACGCAAUCUGAGUAUGCAAAAGGGAUUCAAUGACAAAUUUUGCUAUGGUG2000000006ACAUUACUAUUCACUUCAAAUAUUUGAAAGAAGGAGAAUCAGACCACCAUGUAGUUACUAACGU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	356	473	695	738	902	986	1054	1069	1179	1195	1242	1279	1337
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A	m6A
Genomic Coordinates	10:117285351:-	10:117285234:-	10:117285012:-	10:117284969:-	10:117284805:-	10:117284721:-	10:117284653:-	10:117284638:-	10:117284528:-	10:117284512:-	10:117284465:-	10:117284428:-	10:117284370:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL bXBqJigD9oV3 f6YSioLdAWpr	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 bXBqJigD9oV3 f6YSioLdAWpr	msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	3TeAZFYFxgvp 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 f6YSioLdAWpr	5FhTyQVy2tKW 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KTLz8piFYdwC BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3	bXBqJigD9oV3 f6YSioLdAWpr	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se nfCHyrYzE6fB KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G bXBqJigD9oV3	3TeAZFYFxgvp 6UuHp6YApVKv msuJfBpJvM5H UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn bXBqJigD9oV3 f6YSioLdAWpr	4HMi5ykupT9V 5aTkEfEpX8Xm msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G bXBqJigD9oV3 f6YSioLdAWpr