General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000584336
Gene ID:	ENSG00000167258
Gene Name:	CDK12
Sequence (UNICHARACTER ENCODING)	AAAAAAAUGCAGUAGUUAGGAAAACAAAAUAGAAAAUUAUGAUAGAAAUUAGUCUUUAAAAUUACUGUAACAUAGGAAGCUGAAUGAUAAUAUGGUAGUUACAAUCCUUUCAGACUAUGAUUUUGGGGAGACGUGACUAAAGUUUGGAGAAGCAAGUGUAUUUUUAUACAUGACAGUAAUGAAAACUUUUUACUUUAUUUUAUCUCUCCUAUAUAUUCUUUAAGUUUUAUUUCAGGUUAACCUAUGUCAUCAAACAUUCUGUAAAAUGUGUUAGCCAAGUCCAUGCAAGGUCUCUGUUGUAGAGCAAGAUUAUGUCCUAGAAAUGUGACCACAGCAUGUAUAUUGUUCCCUCUCAUCUUCCUUCCUUCUGCUUUGUUUUAAUGUUUCCAUCUAACAGCAAAAAGGGGCAGGGAGUCUGCCAACAGCCUGCAUGUUAGAACAGUUCUUUAAAGGAAGGAAAUGGAGGAAAUCUUAGACCAAAAUCAGGAUAAUCAUUUGAAACAUAUGAUAUUUUUACACUAGCUGUUAGAUCCAGGAUGCAACUGUUUUACUUUUAAUCACUUGAUUUAUUUAUAAUUGCAAUUUUCUGAUCCCAAGAUUUUAUUCUUUAUAUAUCUGGUUACUUAUAUUGAUAUUUGUUUAUGUUGCACAGUGUGUGUGUUUGUGUUUAUAAUCACAUGUGCUUUUUAAGAUGGUGUUUAAAAGAAGUAACCCUUCCACAGCAUGUCCUCCUCACAUUCUUCCACCAGAGAAGAGGCCCCCUGAGCCCCCCGGACCUCCACCGCCGCCACCUCCACCCCCUCUGGUUGAAGGCGAUCUUUCCAGCGCCCCCCAGGAGUUGAACCCAGCCGUGACAGCCGCCUUGCUGCAACUUUUAUCCCAGCCUGAAGCAGAGCCUCCUGGCCACCUGCCACAUGAGCACCAGGCCUUGAGACCAAUGGAGUACUCCACCCGACCCCGUCCAAACAGGЖCUUAUGGAAACACUGAUGGGCCUGAAACAGGGUUCAGUGCCAUUGЖCACUGAUGAЖCGAAЖCUCUGGUCCAGCCUUGACAGAAUCCUUGGUCCAGACCCUGGUGAAGAACAGGЖCCUUCUCAGGCUCUCUGAGCCACCUUGGGGAGUCCAGCAGUUACCAGGGCACAGGGUCAGUGCAGUUUCCAGGGGACCAGGЖCCUCCGUUUUGCCAGGGUCCCCUUAGCGUUACACCCGGUGGUCGGGCAACCAUUCCUGAAGGCUGAGGGAAGCAGCAAUUCUGUGGUACAUGCAGAGACCAAAUUGCAAAЖCUAUGGGGAGCUGGGGCCAGGAACCACUGGGGCCAGCAGCUCAGGAGCAGGCCUUCACUGGGGGGGCCCAACUCAGUCUUCUGCUUAUGGAAAACUCUAUCGGGGGCCUACAAGAGUCCCACCAAGAGGGGGAAGAGGGAGAGGAGUUCCUUACUAACCCAGAGЖCUUCAGUGUCCUGAAAGAUUCCUUUCCUAUCCAUCCUUCCAUCCAGUUCUCUGAAUCUUUAAUGAAAUCAUUUGCCAGAGCGAGGUAAUCAUCUGCAUUUGGCUACUGCAAAGCUGUCCGUUGUAUUCCUUGCUCACUUGCUACUAGCAGGCGACUUACGAAAUAAUGAUGUUGGCACCAGUUCCCCCUGGAUGGGCUAUAGCCAGAACAUUUACUUCAACUCUACCUUAGUAGAUACAAGUAGAGAAUAUGGAGAGGAUCAUUACAUUGAAAAGUAAAUGUUUUAUUAGUUCAUUGCCUGCACUUACUGAUCGGAAGAGAGAAAGAACAGUUUCAGUAUUGAGAUGGCUCAGGAGAGGCUCUUUGAUUUUUAAAGUUUUGGGGUGGGGGAUUGUGUGUGGUUUCUUUCUUUUGAAUUUUAAUUUAGGUGUUUUGGGUUUUUUUCCUPUAAAGAGAAUAGUGUUCACAAAAUUUGAGCUGCUCUUUGGCUUUUGCUAUAAGGGAAACAGAGUGGCCUGGC
Sequence (SHORT NAMES ENCODING)	AAAAAAAUGCAGUAGUUAGGAAAACAAAAUAGAAAAUUAUGAUAGAAAUUAGUCUUUAAAAUUACUGUAACAUAGGAAGCUGAAUGAUAAUAUGGUAGUUACAAUCCUUUCAGACUAUGAUUUUGGGGAGACGUGACUAAAGUUUGGAGAAGCAAGUGUAUUUUUAUACAUGACAGUAAUGAAAACUUUUUACUUUAUUUUAUCUCUCCUAUAUAUUCUUUAAGUUUUAUUUCAGGUUAACCUAUGUCAUCAAACAUUCUGUAAAAUGUGUUAGCCAAGUCCAUGCAAGGUCUCUGUUGUAGAGCAAGAUUAUGUCCUAGAAAUGUGACCACAGCAUGUAUAUUGUUCCCUCUCAUCUUCCUUCCUUCUGCUUUGUUUUAAUGUUUCCAUCUAACAGCAAAAAGGGGCAGGGAGUCUGCCAACAGCCUGCAUGUUAGAACAGUUCUUUAAAGGAAGGAAAUGGAGGAAAUCUUAGACCAAAAUCAGGAUAAUCAUUUGAAACAUAUGAUAUUUUUACACUAGCUGUUAGAUCCAGGAUGCAACUGUUUUACUUUUAAUCACUUGAUUUAUUUAUAAUUGCAAUUUUCUGAUCCCAAGAUUUUAUUCUUUAUAUAUCUGGUUACUUAUAUUGAUAUUUGUUUAUGUUGCACAGUGUGUGUGUUUGUGUUUAUAAUCACAUGUGCUUUUUAAGAUGGUGUUUAAAAGAAGUAACCCUUCCACAGCAUGUCCUCCUCACAUUCUUCCACCAGAGAAGAGGCCCCCUGAGCCCCCCGGACCUCCACCGCCGCCACCUCCACCCCCUCUGGUUGAAGGCGAUCUUUCCAGCGCCCCCCAGGAGUUGAACCCAGCCGUGACAGCCGCCUUGCUGCAACUUUUAUCCCAGCCUGAAGCAGAGCCUCCUGGCCACCUGCCACAUGAGCACCAGGCCUUGAGACCAAUGGAGUACUCCACCCGACCCCGUCCAAACAGGm6ACUUAUGGAAACACUGAUGGGCCUGAAACAGGGUUCAGUGCCAUUGm6ACACUGAUGAm6ACGAAm6ACUCUGGUCCAGCCUUGACAGAAUCCUUGGUCCAGACCCUGGUGAAGAACAGGm6ACCUUCUCAGGCUCUCUGAGCCACCUUGGGGAGUCCAGCAGUUACCAGGGCACAGGGUCAGUGCAGUUUCCAGGGGACCAGGm6ACCUCCGUUUUGCCAGGGUCCCCUUAGCGUUACACCCGGUGGUCGGGCAACCAUUCCUGAAGGCUGAGGGAAGCAGCAAUUCUGUGGUACAUGCAGAGACCAAAUUGCAAAm6ACUAUGGGGAGCUGGGGCCAGGAACCACUGGGGCCAGCAGCUCAGGAGCAGGCCUUCACUGGGGGGGCCCAACUCAGUCUUCUGCUUAUGGAAAACUCUAUCGGGGGCCUACAAGAGUCCCACCAAGAGGGGGAAGAGGGAGAGGAGUUCCUUACUAACCCAGAGm6ACUUCAGUGUCCUGAAAGAUUCCUUUCCUAUCCAUCCUUCCAUCCAGUUCUCUGAAUCUUUAAUGAAAUCAUUUGCCAGAGCGAGGUAAUCAUCUGCAUUUGGCUACUGCAAAGCUGUCCGUUGUAUUCCUUGCUCACUUGCUACUAGCAGGCGACUUACGAAAUAAUGAUGUUGGCACCAGUUCCCCCUGGAUGGGCUAUAGCCAGAACAUUUACUUCAACUCUACCUUAGUAGAUACAAGUAGAGAAUAUGGAGAGGAUCAUUACAUUGAAAAGUAAAUGUUUUAUUAGUUCAUUGCCUGCACUUACUGAUCGGAAGAGAGAAAGAACAGUUUCAGUAUUGAGAUGGCUCAGGAGAGGCUCUUUGAUUUUUAAAGUUUUGGGGUGGGGGAUUGUGUGUGGUUUCUUUCUUUUGAAUUUUAAUUUAGGUGUUUUGGGUUUUUUUCCUYUAAAGAGAAUAGUGUUCACAAAAUUUGAGCUGCUCUUUGGCUUUUGCUAUAAGGGAAACAGAGUGGCCUGGC
Sequence (MODOMICS CODE ENCODING)	AAAAAAAUGCAGUAGUUAGGAAAACAAAAUAGAAAAUUAUGAUAGAAAUUAGUCUUUAAAAUUACUGUAACAUAGGAAGCUGAAUGAUAAUAUGGUAGUUACAAUCCUUUCAGACUAUGAUUUUGGGGAGACGUGACUAAAGUUUGGAGAAGCAAGUGUAUUUUUAUACAUGACAGUAAUGAAAACUUUUUACUUUAUUUUAUCUCUCCUAUAUAUUCUUUAAGUUUUAUUUCAGGUUAACCUAUGUCAUCAAACAUUCUGUAAAAUGUGUUAGCCAAGUCCAUGCAAGGUCUCUGUUGUAGAGCAAGAUUAUGUCCUAGAAAUGUGACCACAGCAUGUAUAUUGUUCCCUCUCAUCUUCCUUCCUUCUGCUUUGUUUUAAUGUUUCCAUCUAACAGCAAAAAGGGGCAGGGAGUCUGCCAACAGCCUGCAUGUUAGAACAGUUCUUUAAAGGAAGGAAAUGGAGGAAAUCUUAGACCAAAAUCAGGAUAAUCAUUUGAAACAUAUGAUAUUUUUACACUAGCUGUUAGAUCCAGGAUGCAACUGUUUUACUUUUAAUCACUUGAUUUAUUUAUAAUUGCAAUUUUCUGAUCCCAAGAUUUUAUUCUUUAUAUAUCUGGUUACUUAUAUUGAUAUUUGUUUAUGUUGCACAGUGUGUGUGUUUGUGUUUAUAAUCACAUGUGCUUUUUAAGAUGGUGUUUAAAAGAAGUAACCCUUCCACAGCAUGUCCUCCUCACAUUCUUCCACCAGAGAAGAGGCCCCCUGAGCCCCCCGGACCUCCACCGCCGCCACCUCCACCCCCUCUGGUUGAAGGCGAUCUUUCCAGCGCCCCCCAGGAGUUGAACCCAGCCGUGACAGCCGCCUUGCUGCAACUUUUAUCCCAGCCUGAAGCAGAGCCUCCUGGCCACCUGCCACAUGAGCACCAGGCCUUGAGACCAAUGGAGUACUCCACCCGACCCCGUCCAAACAGG2000000006ACUUAUGGAAACACUGAUGGGCCUGAAACAGGGUUCAGUGCCAUUG2000000006ACACUGAUGA2000000006ACGAA2000000006ACUCUGGUCCAGCCUUGACAGAAUCCUUGGUCCAGACCCUGGUGAAGAACAGG2000000006ACCUUCUCAGGCUCUCUGAGCCACCUUGGGGAGUCCAGCAGUUACCAGGGCACAGGGUCAGUGCAGUUUCCAGGGGACCAGG2000000006ACCUCCGUUUUGCCAGGGUCCCCUUAGCGUUACACCCGGUGGUCGGGCAACCAUUCCUGAAGGCUGAGGGAAGCAGCAAUUCUGUGGUACAUGCAGAGACCAAAUUGCAAA2000000006ACUAUGGGGAGCUGGGGCCAGGAACCACUGGGGCCAGCAGCUCAGGAGCAGGCCUUCACUGGGGGGGCCCAACUCAGUCUUCUGCUUAUGGAAAACUCUAUCGGGGGCCUACAAGAGUCCCACCAAGAGGGGGAAGAGGGAGAGGAGUUCCUUACUAACCCAGAG2000000006ACUUCAGUGUCCUGAAAGAUUCCUUUCCUAUCCAUCCUUCCAUCCAGUUCUCUGAAUCUUUAAUGAAAUCAUUUGCCAGAGCGAGGUAAUCAUCUGCAUUUGGCUACUGCAAAGCUGUCCGUUGUAUUCCUUGCUCACUUGCUACUAGCAGGCGACUUACGAAAUAAUGAUGUUGGCACCAGUUCCCCCUGGAUGGGCUAUAGCCAGAACAUUUACUUCAACUCUACCUUAGUAGAUACAAGUAGAGAAUAUGGAGAGGAUCAUUACAUUGAAAAGUAAAUGUUUUAUUAGUUCAUUGCCUGCACUUACUGAUCGGAAGAGAGAAAGAACAGUUUCAGUAUUGAGAUGGCUCAGGAGAGGCUCUUUGAUUUUUAAAGUUUUGGGGUGGGGGAUUGUGUGUGGUUUCUUUCUUUUGAAUUUUAAUUUAGGUGUUUUGGGUUUUUUUCCU2000000009UUAAAGAGAAUAGUGUUCACAAAAUUUGAGCUGCUCUUUGGCUUUUGCUAUAAGGGAAACAGAGUGGCCUGGC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	971	1017	1027	1032	1085	1167	1278	1443	1891
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	17:39530852:+	17:39530898:+	17:39530908:+	17:39530913:+	17:39530966:+	17:39531048:+	17:39531159:+	17:39531324:+	17:39531772:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB UKen6WEino9G BtsJQJ3DteUq	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KTLz8piFYdwC nfCHyrYzE6fB KjeH7Nsffuas UKen6WEino9G BtsJQJ3DteUq	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se BtsJQJ3DteUq	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BtsJQJ3DteUq	3TeAZFYFxgvp 4HMi5ykupT9V 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq	BtsJQJ3DteUq dknfVe6BK8aP