Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000540900
Gene ID: ENSG00000126653
Gene Name: NSRP1
Sequence (UNICHARACTER ENCODING) AACAUCCUUAUCUCAGUAAUUGAUCUCUUUGGCUGCUCUGAGACUAGCUGGGAAUGAACCAAGAGUGAAUGAGUGCACAGAUGUGGGCAGAGUUUUCAAAAAGAUUUUGAGGCAGCCGGUGGGCUCCGAAACAAAACAGAGGUCACUGGAUCCGAUUCCCAGUACCAUAGAAGUGACUCAAACCAGCGAUUCAACCGACAAGCAGGAUCCGGGCCACCCAAAGCCGCGCGAGAGUUUACGUGACGACAUCGGCGUCAGCGUCACGGAGGCGUCGGCCACGUUCAGCGGACACGGGAGCAAGAUGGCGAUUCCGGGCAGGCAACCUCUGUGAGUGAAAGCCUUCAGAGGGAAGCUGCUAAGAAGCAGGCCAUGAAACAGACCAAACUGGAAAUCCAGAAGGCCCUUGCAGAAGAUGCUACUGUGUAUGAAUAUGACAGUAUUUAUGAUGAAAUGCAGAAAAAAAAGGAGGAAAAUAAUCCCAAAUUGCUUUUGGGGAAAGACAGAAAGCCCAAGUAUAUUCACAACUUGCUAAAAGCAGUUGAGAUCAGAAAAAAGGAACAGGAAAAAAGAAUGGAAAAGAAAAUACAGAGAGAACGAGAAAUGGAAAAGGGGGAGUUUGAUGAUAAAGAAGCAUUUGUGACAUCUGCAUAUAAGAAAAAACUGCAAGAGAGAGCUGAAGAAGAAGAAAGAGAAAAGAGGGCUGCUGCACUGGAAGCAUGUUUGGAUGUAACCAAGCAGAAAGAUCUCAGUGGAUUUUAUAGGCACCUAUUAAAUCAAGCAGUUGGUGAAGAGGAAGUACCUAAAUGCAGCUUUCGUGAAGCCAGAUCUGGUAUAAAGGAAGAAAAAUCAAGGGGCUUCUCCAAUGAAGUAAGUUCAAAAAACAGAAUACCACAAGAGAAAUGCAUUCUUCAAACUGAUGUGAAAGUAGAGGAAAACCCAGAUGCAGACAGUGACUUCGAUGCUAAGAGCAGUGCGGAUGAUGAAAUAGAAGAAACUAGAGUGAACUGCAGAAGGGAAAAGGUCAUAGAGACCCCUGAGAAUGACUUCAAGCACCACAGGAGUCAAAACCACUCUCGGUCACCUAGUGAAGAAAGAGGGCACAGUACCAGGCACCACACGAAAGGAUCACGAACGUCGAGAGGACAUGAGAAAAGGGAAGAUCAGCACCAGCAGAAGCAAUCCAGAGACCAAGAGAACCAUUACACUGACCGUGAUUACCGGAAAGAAAGGGAUUCUCAUAGGCACAGAGAGGCCAGUCAUAGAGAUUCCCAUUGGAAGAGGCAUGAACAGGAAGAUAAACCAAGGGCGAGGGACCAAAGAGAAAGAAGUGACAGAGUAUGGAAAAGGGAGAAAGAUAGGGAGAAAUAUUCCCAAAGAGAACAAGAAAGAGAUAGACAACAAAAUGAUCAGAACCGACCCAGUGAGAAAGGAGAGAAGGAAGAGAAAAGCAAAGCAAAGGAAGAGCAUAUGAAAGUAAGGAAGGAAAGAUAUGAAAAUAAUGAUAAAUACAGAGAUAGAGAAAAACGAGAGGUAGGUGUUCAGUCUUCAGAAAGAAAUCAAGACAGAAAGGAAAGCAGCCCAAAUUCUAGGGCAAAGGAUAAAUUUCUUGACCAAGAAAGAUCCAACAAAAUGAGAAACAUGGCAAAGGACAAAGAAAGAAACCAAGAGAAACCCUCUAAUUCUGAAUCAUCACUGGGAGCAAAACACAGЖCUCACAGAGGAAGGGCAAGAGAAGGGUAAAGAACAAGAGAGACCACCUGAGGCAGUGAGCAAGUUUGCAAAGCGGAACAAUGAAGAAACUGUAAUGUCAGCUAGAGЖCAGGUACUUGGCCAGGCAGAUGGCGCGGGUUAAUGCAAAGЖCCUAUAUUGAGAAAGAAGAUGAUUGAUGGCUACCCCAAGAGAAAGAUUUAAGGAAGCACAGAAAЖCUGUAAUUCCUGGAACCUGCUGCGUAAAACCAUAAAGGAGUGUGUUACCAGUAGUUUGGAGGGCAUUUUUAAAUUUAUUUUCAAAAUUUUAAGUUAAAAGUCAGUCUUACAGCUUGGAUGUUUGGAUGUGGAUG
Sequence (SHORT NAMES ENCODING) AACAUCCUUAUCUCAGUAAUUGAUCUCUUUGGCUGCUCUGAGACUAGCUGGGAAUGAACCAAGAGUGAAUGAGUGCACAGAUGUGGGCAGAGUUUUCAAAAAGAUUUUGAGGCAGCCGGUGGGCUCCGAAACAAAACAGAGGUCACUGGAUCCGAUUCCCAGUACCAUAGAAGUGACUCAAACCAGCGAUUCAACCGACAAGCAGGAUCCGGGCCACCCAAAGCCGCGCGAGAGUUUACGUGACGACAUCGGCGUCAGCGUCACGGAGGCGUCGGCCACGUUCAGCGGACACGGGAGCAAGAUGGCGAUUCCGGGCAGGCAACCUCUGUGAGUGAAAGCCUUCAGAGGGAAGCUGCUAAGAAGCAGGCCAUGAAACAGACCAAACUGGAAAUCCAGAAGGCCCUUGCAGAAGAUGCUACUGUGUAUGAAUAUGACAGUAUUUAUGAUGAAAUGCAGAAAAAAAAGGAGGAAAAUAAUCCCAAAUUGCUUUUGGGGAAAGACAGAAAGCCCAAGUAUAUUCACAACUUGCUAAAAGCAGUUGAGAUCAGAAAAAAGGAACAGGAAAAAAGAAUGGAAAAGAAAAUACAGAGAGAACGAGAAAUGGAAAAGGGGGAGUUUGAUGAUAAAGAAGCAUUUGUGACAUCUGCAUAUAAGAAAAAACUGCAAGAGAGAGCUGAAGAAGAAGAAAGAGAAAAGAGGGCUGCUGCACUGGAAGCAUGUUUGGAUGUAACCAAGCAGAAAGAUCUCAGUGGAUUUUAUAGGCACCUAUUAAAUCAAGCAGUUGGUGAAGAGGAAGUACCUAAAUGCAGCUUUCGUGAAGCCAGAUCUGGUAUAAAGGAAGAAAAAUCAAGGGGCUUCUCCAAUGAAGUAAGUUCAAAAAACAGAAUACCACAAGAGAAAUGCAUUCUUCAAACUGAUGUGAAAGUAGAGGAAAACCCAGAUGCAGACAGUGACUUCGAUGCUAAGAGCAGUGCGGAUGAUGAAAUAGAAGAAACUAGAGUGAACUGCAGAAGGGAAAAGGUCAUAGAGACCCCUGAGAAUGACUUCAAGCACCACAGGAGUCAAAACCACUCUCGGUCACCUAGUGAAGAAAGAGGGCACAGUACCAGGCACCACACGAAAGGAUCACGAACGUCGAGAGGACAUGAGAAAAGGGAAGAUCAGCACCAGCAGAAGCAAUCCAGAGACCAAGAGAACCAUUACACUGACCGUGAUUACCGGAAAGAAAGGGAUUCUCAUAGGCACAGAGAGGCCAGUCAUAGAGAUUCCCAUUGGAAGAGGCAUGAACAGGAAGAUAAACCAAGGGCGAGGGACCAAAGAGAAAGAAGUGACAGAGUAUGGAAAAGGGAGAAAGAUAGGGAGAAAUAUUCCCAAAGAGAACAAGAAAGAGAUAGACAACAAAAUGAUCAGAACCGACCCAGUGAGAAAGGAGAGAAGGAAGAGAAAAGCAAAGCAAAGGAAGAGCAUAUGAAAGUAAGGAAGGAAAGAUAUGAAAAUAAUGAUAAAUACAGAGAUAGAGAAAAACGAGAGGUAGGUGUUCAGUCUUCAGAAAGAAAUCAAGACAGAAAGGAAAGCAGCCCAAAUUCUAGGGCAAAGGAUAAAUUUCUUGACCAAGAAAGAUCCAACAAAAUGAGAAACAUGGCAAAGGACAAAGAAAGAAACCAAGAGAAACCCUCUAAUUCUGAAUCAUCACUGGGAGCAAAACACAGm6ACUCACAGAGGAAGGGCAAGAGAAGGGUAAAGAACAAGAGAGACCACCUGAGGCAGUGAGCAAGUUUGCAAAGCGGAACAAUGAAGAAACUGUAAUGUCAGCUAGAGm6ACAGGUACUUGGCCAGGCAGAUGGCGCGGGUUAAUGCAAAGm6ACCUAUAUUGAGAAAGAAGAUGAUUGAUGGCUACCCCAAGAGAAAGAUUUAAGGAAGCACAGAAAm6ACUGUAAUUCCUGGAACCUGCUGCGUAAAACCAUAAAGGAGUGUGUUACCAGUAGUUUGGAGGGCAUUUUUAAAUUUAUUUUCAAAAUUUUAAGUUAAAAGUCAGUCUUACAGCUUGGAUGUUUGGAUGUGGAUG
Sequence (MODOMICS CODE ENCODING) AACAUCCUUAUCUCAGUAAUUGAUCUCUUUGGCUGCUCUGAGACUAGCUGGGAAUGAACCAAGAGUGAAUGAGUGCACAGAUGUGGGCAGAGUUUUCAAAAAGAUUUUGAGGCAGCCGGUGGGCUCCGAAACAAAACAGAGGUCACUGGAUCCGAUUCCCAGUACCAUAGAAGUGACUCAAACCAGCGAUUCAACCGACAAGCAGGAUCCGGGCCACCCAAAGCCGCGCGAGAGUUUACGUGACGACAUCGGCGUCAGCGUCACGGAGGCGUCGGCCACGUUCAGCGGACACGGGAGCAAGAUGGCGAUUCCGGGCAGGCAACCUCUGUGAGUGAAAGCCUUCAGAGGGAAGCUGCUAAGAAGCAGGCCAUGAAACAGACCAAACUGGAAAUCCAGAAGGCCCUUGCAGAAGAUGCUACUGUGUAUGAAUAUGACAGUAUUUAUGAUGAAAUGCAGAAAAAAAAGGAGGAAAAUAAUCCCAAAUUGCUUUUGGGGAAAGACAGAAAGCCCAAGUAUAUUCACAACUUGCUAAAAGCAGUUGAGAUCAGAAAAAAGGAACAGGAAAAAAGAAUGGAAAAGAAAAUACAGAGAGAACGAGAAAUGGAAAAGGGGGAGUUUGAUGAUAAAGAAGCAUUUGUGACAUCUGCAUAUAAGAAAAAACUGCAAGAGAGAGCUGAAGAAGAAGAAAGAGAAAAGAGGGCUGCUGCACUGGAAGCAUGUUUGGAUGUAACCAAGCAGAAAGAUCUCAGUGGAUUUUAUAGGCACCUAUUAAAUCAAGCAGUUGGUGAAGAGGAAGUACCUAAAUGCAGCUUUCGUGAAGCCAGAUCUGGUAUAAAGGAAGAAAAAUCAAGGGGCUUCUCCAAUGAAGUAAGUUCAAAAAACAGAAUACCACAAGAGAAAUGCAUUCUUCAAACUGAUGUGAAAGUAGAGGAAAACCCAGAUGCAGACAGUGACUUCGAUGCUAAGAGCAGUGCGGAUGAUGAAAUAGAAGAAACUAGAGUGAACUGCAGAAGGGAAAAGGUCAUAGAGACCCCUGAGAAUGACUUCAAGCACCACAGGAGUCAAAACCACUCUCGGUCACCUAGUGAAGAAAGAGGGCACAGUACCAGGCACCACACGAAAGGAUCACGAACGUCGAGAGGACAUGAGAAAAGGGAAGAUCAGCACCAGCAGAAGCAAUCCAGAGACCAAGAGAACCAUUACACUGACCGUGAUUACCGGAAAGAAAGGGAUUCUCAUAGGCACAGAGAGGCCAGUCAUAGAGAUUCCCAUUGGAAGAGGCAUGAACAGGAAGAUAAACCAAGGGCGAGGGACCAAAGAGAAAGAAGUGACAGAGUAUGGAAAAGGGAGAAAGAUAGGGAGAAAUAUUCCCAAAGAGAACAAGAAAGAGAUAGACAACAAAAUGAUCAGAACCGACCCAGUGAGAAAGGAGAGAAGGAAGAGAAAAGCAAAGCAAAGGAAGAGCAUAUGAAAGUAAGGAAGGAAAGAUAUGAAAAUAAUGAUAAAUACAGAGAUAGAGAAAAACGAGAGGUAGGUGUUCAGUCUUCAGAAAGAAAUCAAGACAGAAAGGAAAGCAGCCCAAAUUCUAGGGCAAAGGAUAAAUUUCUUGACCAAGAAAGAUCCAACAAAAUGAGAAACAUGGCAAAGGACAAAGAAAGAAACCAAGAGAAACCCUCUAAUUCUGAAUCAUCACUGGGAGCAAAACACAG2000000006ACUCACAGAGGAAGGGCAAGAGAAGGGUAAAGAACAAGAGAGACCACCUGAGGCAGUGAGCAAGUUUGCAAAGCGGAACAAUGAAGAAACUGUAAUGUCAGCUAGAG2000000006ACAGGUACUUGGCCAGGCAGAUGGCGCGGGUUAAUGCAAAG2000000006ACCUAUAUUGAGAAAGAAGAUGAUUGAUGGCUACCCCAAGAGAAAGAUUUAAGGAAGCACAGAAA2000000006ACUGUAAUUCCUGGAACCUGCUGCGUAAAACCAUAAAGGAGUGUGUUACCAGUAGUUUGGAGGGCAUUUUUAAAUUUAUUUUCAAAAUUUUAAGUUAAAAGUCAGUCUUACAGCUUGGAUGUUUGGAUGUGGAUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1710 1817 1858 1923
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 17:30185500:+ 17:30185607:+ 17:30185648:+ 17:30185713:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BtsJQJ3DteUq
dknfVe6BK8aP
3TeAZFYFxgvp
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
BtsJQJ3DteUq
dknfVe6BK8aP
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BtsJQJ3DteUq
dknfVe6BK8aP
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BtsJQJ3DteUq
dknfVe6BK8aP