General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000580840
Gene ID:	ENSG00000172171
Gene Name:	TEFM
Sequence (UNICHARACTER ENCODING)	AAUGGAGGAAGACUGGACCUACUGAUUCAACUUGGAGAUGAGCGGGUCUGUCCUCUUCACGGCGGGAGAGAGGUGGAGAUGCUUUCUGACCCCGUCGAGGUCAPCCCUGUACUGGGCCUUACAUAAUUUCUGCUGUCGGAAAAAAUCCACUACACCUAAGAAAAUUACUCCCAAUGUUACUUUUUGUGAUGAAAAUGCAAAGGAGCCCGAAAAUGCACUUGACAAGCUCUUCUCUUCAGAACAGCAGGCUUCCAUCUUGCAUGUGUUGAAUACAGCAUCUACUAAAGAЖCUUGAAGCUUUCCGAUUGCUUCGUGGAAGAAGGUCCAUCAAUAUCGUAGAGCACAGAGAAAЖCUUUGGGCCAUUUCAGAAUUUAGAGAGUUUAAUGAAUGUGCCCUUGUUUAAGUAUAAAAGUACAGUUCAAGUUUGUAЖCUCCAUACUUUGUCCAAAGЖCUGGACGGGAAAAAAGAAAGUCACCGGAAAACCGGUUCCUGAGAAAGCUCCUCAAACCAGACAUAGAAAGAGAAAGACUUAAGGCAGUUAAUAGUAUCAUAUCUAUCGUUUUUGGUACUCGAAGAAUUGCCUGGGCUCACCUUGAUCGUAAGUUGACAGUGCUGGACUGGCAGCAAAGUGACCGUUGGAGUUUAAUGAGAGGAAUAUACUCAUCAUCAGUCUAUUUAGAAGAGGUAAGGCAGUUGCACCUCCAGAUUCCUACCUGCUAGAGCUCCUUGUGUAGUUUAAUCUUCUGGUCCCAAAAGGAAUGUAAUAAAAUAGUAAAGAUGGGUUUUCUUCUGGUACUUGUUACUCACUUAUUCCUAUUAUGUUUUCCAUCACCUUUGAUUUUUAAAAAUUCAACCUUUAGUUAGUUCAAGAAAUGCCUUAUGCAUCGAAGGCAGAUACUGAGAAAAUCAAUGGUAUUUCAUUCUAAAUGUUAUAGAACAUUAUCACUCUUUUAUUUAUAAAGCUUAUUUUUCAAAAUGCCAUCACAUUGUCUCAUUUGAGUUUUCAAAACCUUGCGAAAUGGUCAGGAAUUAUCACCUUAAUGGUCAGGAAUUACCACCUUGAUUAUACAUAUGAAAUCUGUGGUUCAGUCAAGCAUCUGAUGUGAUUAGUCAGUUGCAGAGGUGAUUGAUUCUUGCUAGUUAUUCUAACCGUAUGCUCUAUCCCAGAAAAUGUUUGAAGGUUUAGUAAAACAGUUUUAAGUUGUCUAACCUUAAAGCCAAUACAUAUUUUAGAAAUUAUGAAGUCCACUGUACAGAUCAAGAAACUGGUACUUAGGAGGACUAAACAGCUUAGCUUAGCUGUUGUUGUGACAUAACCAUGACCAGAACCAGACUGCUCAUAAAAUGGCUUUUUCAGUUAUUUCAAAAUUGUCAAUAUAGUAUAAAUUAACUAAUUAUAAUAUUUUUAAAUAGAAGUGGGACAGAGAGGGGACCAAACAUAAAAUGUAAUGAAUUAUUUCUGUUCCUUUAUUUUGUCUUUUUUUAAAAAGAUUUCCUCGAUCAUUUCAAAGAUGCCUAAAGCAGAUUUCUAUGUUCUGGAAAAAACAGGЖCUUUCCAUUCAGAЖCUCAUCUCUGUUUCCAAUACUGUUACAUUUUCAUAUCAUGGAAGCCAUGCUGUAUGCCUUAUUAAAUAAAЖCUUUUGCCCAGGAUGGGCAGCAUCAGGUGCUGAGCAUGAAUCGAAAUGCAGUGGGGAAGCAUUUUGAЖCUGAUGAUUGGUGACUCCCGGЖCUAGUGGAAAAGAGCUAGUGAAGCAGUUUCUCUUCGAUUCUAUACUGAAGGCGGAUCCUCGGGUGUUCUUCCCAUCAGAUAAAAUAGUUCACUACAGACAGAUGUUUUUAUCUACUGAACUACAAAGAGUAGAAGAGCUPUAUGAUUCAUUAUUACAAGCUAUUGCCUUCUAUGAAUUAGCAGUGUUUGACUCUCAGCCUUAGAAUUCUGAGGUUAACGUGCUAAAGUAUAAUUAUUAGCUCUAACGUAЖCACCAACUGUUGUGAACAPCCAUGUUAUUGGAAAAGAACACAUUUUCAGUGUAUUUUAGAUGUUUAAAUUCUGACUUUUGGCUAUUAAAUGGUUUACACAAUAAGCCAAGACCAAAUCAAUAAACAUUUUAUGAGA
Sequence (SHORT NAMES ENCODING)	AAUGGAGGAAGACUGGACCUACUGAUUCAACUUGGAGAUGAGCGGGUCUGUCCUCUUCACGGCGGGAGAGAGGUGGAGAUGCUUUCUGACCCCGUCGAGGUCAYCCCUGUACUGGGCCUUACAUAAUUUCUGCUGUCGGAAAAAAUCCACUACACCUAAGAAAAUUACUCCCAAUGUUACUUUUUGUGAUGAAAAUGCAAAGGAGCCCGAAAAUGCACUUGACAAGCUCUUCUCUUCAGAACAGCAGGCUUCCAUCUUGCAUGUGUUGAAUACAGCAUCUACUAAAGAm6ACUUGAAGCUUUCCGAUUGCUUCGUGGAAGAAGGUCCAUCAAUAUCGUAGAGCACAGAGAAAm6ACUUUGGGCCAUUUCAGAAUUUAGAGAGUUUAAUGAAUGUGCCCUUGUUUAAGUAUAAAAGUACAGUUCAAGUUUGUAm6ACUCCAUACUUUGUCCAAAGm6ACUGGACGGGAAAAAAGAAAGUCACCGGAAAACCGGUUCCUGAGAAAGCUCCUCAAACCAGACAUAGAAAGAGAAAGACUUAAGGCAGUUAAUAGUAUCAUAUCUAUCGUUUUUGGUACUCGAAGAAUUGCCUGGGCUCACCUUGAUCGUAAGUUGACAGUGCUGGACUGGCAGCAAAGUGACCGUUGGAGUUUAAUGAGAGGAAUAUACUCAUCAUCAGUCUAUUUAGAAGAGGUAAGGCAGUUGCACCUCCAGAUUCCUACCUGCUAGAGCUCCUUGUGUAGUUUAAUCUUCUGGUCCCAAAAGGAAUGUAAUAAAAUAGUAAAGAUGGGUUUUCUUCUGGUACUUGUUACUCACUUAUUCCUAUUAUGUUUUCCAUCACCUUUGAUUUUUAAAAAUUCAACCUUUAGUUAGUUCAAGAAAUGCCUUAUGCAUCGAAGGCAGAUACUGAGAAAAUCAAUGGUAUUUCAUUCUAAAUGUUAUAGAACAUUAUCACUCUUUUAUUUAUAAAGCUUAUUUUUCAAAAUGCCAUCACAUUGUCUCAUUUGAGUUUUCAAAACCUUGCGAAAUGGUCAGGAAUUAUCACCUUAAUGGUCAGGAAUUACCACCUUGAUUAUACAUAUGAAAUCUGUGGUUCAGUCAAGCAUCUGAUGUGAUUAGUCAGUUGCAGAGGUGAUUGAUUCUUGCUAGUUAUUCUAACCGUAUGCUCUAUCCCAGAAAAUGUUUGAAGGUUUAGUAAAACAGUUUUAAGUUGUCUAACCUUAAAGCCAAUACAUAUUUUAGAAAUUAUGAAGUCCACUGUACAGAUCAAGAAACUGGUACUUAGGAGGACUAAACAGCUUAGCUUAGCUGUUGUUGUGACAUAACCAUGACCAGAACCAGACUGCUCAUAAAAUGGCUUUUUCAGUUAUUUCAAAAUUGUCAAUAUAGUAUAAAUUAACUAAUUAUAAUAUUUUUAAAUAGAAGUGGGACAGAGAGGGGACCAAACAUAAAAUGUAAUGAAUUAUUUCUGUUCCUUUAUUUUGUCUUUUUUUAAAAAGAUUUCCUCGAUCAUUUCAAAGAUGCCUAAAGCAGAUUUCUAUGUUCUGGAAAAAACAGGm6ACUUUCCAUUCAGAm6ACUCAUCUCUGUUUCCAAUACUGUUACAUUUUCAUAUCAUGGAAGCCAUGCUGUAUGCCUUAUUAAAUAAAm6ACUUUUGCCCAGGAUGGGCAGCAUCAGGUGCUGAGCAUGAAUCGAAAUGCAGUGGGGAAGCAUUUUGAm6ACUGAUGAUUGGUGACUCCCGGm6ACUAGUGGAAAAGAGCUAGUGAAGCAGUUUCUCUUCGAUUCUAUACUGAAGGCGGAUCCUCGGGUGUUCUUCCCAUCAGAUAAAAUAGUUCACUACAGACAGAUGUUUUUAUCUACUGAACUACAAAGAGUAGAAGAGCUYUAUGAUUCAUUAUUACAAGCUAUUGCCUUCUAUGAAUUAGCAGUGUUUGACUCUCAGCCUUAGAAUUCUGAGGUUAACGUGCUAAAGUAUAAUUAUUAGCUCUAACGUAm6ACACCAACUGUUGUGAACAYCCAUGUUAUUGGAAAAGAACACAUUUUCAGUGUAUUUUAGAUGUUUAAAUUCUGACUUUUGGCUAUUAAAUGGUUUACACAAUAAGCCAAGACCAAAUCAAUAAACAUUUUAUGAGA
Sequence (MODOMICS CODE ENCODING)	AAUGGAGGAAGACUGGACCUACUGAUUCAACUUGGAGAUGAGCGGGUCUGUCCUCUUCACGGCGGGAGAGAGGUGGAGAUGCUUUCUGACCCCGUCGAGGUCA2000000009UCCCUGUACUGGGCCUUACAUAAUUUCUGCUGUCGGAAAAAAUCCACUACACCUAAGAAAAUUACUCCCAAUGUUACUUUUUGUGAUGAAAAUGCAAAGGAGCCCGAAAAUGCACUUGACAAGCUCUUCUCUUCAGAACAGCAGGCUUCCAUCUUGCAUGUGUUGAAUACAGCAUCUACUAAAGA2000000006ACUUGAAGCUUUCCGAUUGCUUCGUGGAAGAAGGUCCAUCAAUAUCGUAGAGCACAGAGAAA2000000006ACUUUGGGCCAUUUCAGAAUUUAGAGAGUUUAAUGAAUGUGCCCUUGUUUAAGUAUAAAAGUACAGUUCAAGUUUGUA2000000006ACUCCAUACUUUGUCCAAAG2000000006ACUGGACGGGAAAAAAGAAAGUCACCGGAAAACCGGUUCCUGAGAAAGCUCCUCAAACCAGACAUAGAAAGAGAAAGACUUAAGGCAGUUAAUAGUAUCAUAUCUAUCGUUUUUGGUACUCGAAGAAUUGCCUGGGCUCACCUUGAUCGUAAGUUGACAGUGCUGGACUGGCAGCAAAGUGACCGUUGGAGUUUAAUGAGAGGAAUAUACUCAUCAUCAGUCUAUUUAGAAGAGGUAAGGCAGUUGCACCUCCAGAUUCCUACCUGCUAGAGCUCCUUGUGUAGUUUAAUCUUCUGGUCCCAAAAGGAAUGUAAUAAAAUAGUAAAGAUGGGUUUUCUUCUGGUACUUGUUACUCACUUAUUCCUAUUAUGUUUUCCAUCACCUUUGAUUUUUAAAAAUUCAACCUUUAGUUAGUUCAAGAAAUGCCUUAUGCAUCGAAGGCAGAUACUGAGAAAAUCAAUGGUAUUUCAUUCUAAAUGUUAUAGAACAUUAUCACUCUUUUAUUUAUAAAGCUUAUUUUUCAAAAUGCCAUCACAUUGUCUCAUUUGAGUUUUCAAAACCUUGCGAAAUGGUCAGGAAUUAUCACCUUAAUGGUCAGGAAUUACCACCUUGAUUAUACAUAUGAAAUCUGUGGUUCAGUCAAGCAUCUGAUGUGAUUAGUCAGUUGCAGAGGUGAUUGAUUCUUGCUAGUUAUUCUAACCGUAUGCUCUAUCCCAGAAAAUGUUUGAAGGUUUAGUAAAACAGUUUUAAGUUGUCUAACCUUAAAGCCAAUACAUAUUUUAGAAAUUAUGAAGUCCACUGUACAGAUCAAGAAACUGGUACUUAGGAGGACUAAACAGCUUAGCUUAGCUGUUGUUGUGACAUAACCAUGACCAGAACCAGACUGCUCAUAAAAUGGCUUUUUCAGUUAUUUCAAAAUUGUCAAUAUAGUAUAAAUUAACUAAUUAUAAUAUUUUUAAAUAGAAGUGGGACAGAGAGGGGACCAAACAUAAAAUGUAAUGAAUUAUUUCUGUUCCUUUAUUUUGUCUUUUUUUAAAAAGAUUUCCUCGAUCAUUUCAAAGAUGCCUAAAGCAGAUUUCUAUGUUCUGGAAAAAACAGG2000000006ACUUUCCAUUCAGA2000000006ACUCAUCUCUGUUUCCAAUACUGUUACAUUUUCAUAUCAUGGAAGCCAUGCUGUAUGCCUUAUUAAAUAAA2000000006ACUUUUGCCCAGGAUGGGCAGCAUCAGGUGCUGAGCAUGAAUCGAAAUGCAGUGGGGAAGCAUUUUGA2000000006ACUGAUGAUUGGUGACUCCCGG2000000006ACUAGUGGAAAAGAGCUAGUGAAGCAGUUUCUCUUCGAUUCUAUACUGAAGGCGGAUCCUCGGGUGUUCUUCCCAUCAGAUAAAAUAGUUCACUACAGACAGAUGUUUUUAUCUACUGAACUACAAAGAGUAGAAGAGCU2000000009UUAUGAUUCAUUAUUACAAGCUAUUGCCUUCUAUGAAUUAGCAGUGUUUGACUCUCAGCCUUAGAAUUCUGAGGUUAACGUGCUAAAGUAUAAUUAUUAGCUCUAACGUA2000000006ACACCAACUGUUGUGAACA2000000009UCCAUGUUAUUGGAAAAGAACACAUUUUCAGUGUAUUUUAGAUGUUUAAAUUCUGACUUUUGGCUAUUAAAUGGUUUACACAAUAAGCCAAGACCAAAUCAAUAAACAUUUUAUGAGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	104	289	351	429	449	1548	1562	1633	1701	1723	1863	1973	1992
Modification Positions	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	Y
Genomic Coordinates	17:30904494:-	17:30904309:-	17:30904247:-	17:30904169:-	17:30904149:-	17:30899547:-	17:30899533:-	17:30899462:-	17:30899394:-	17:30899372:-	17:30899232:-	17:30899122:-	17:30899103:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8