General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000311177
Gene ID:	ENSG00000170689
Gene Name:	HOXB9
Sequence (UNICHARACTER ENCODING)	ACACCGGUCCGGGUGCCACCUCUCCCUGCUUGGGCGCCGCCGCGCGAGCGCUUCCCUUCCCCCUGCAAGCGCCCGGAUAAUGUCUGAGAAUGUCCAUUUCUGGGЖCGCUUAGCAGCUAUUAUGUCGACUCGAUCAUAAGUCACGAGAGUGAGGACGCGCCUCCAGCCAAGUUUCCUUCUGGCCAGUACGCGAGCUCGCGGCAGCCGGGCCACGCGGAGCACCUGGAGUUCCCCUCGUGCAGCUUCCAGCCCAAAGCGCCGGUGUUCGGCGCCUCCUGGGCGCCGCUGAGCCCGCACGCGUCCGGGAGCCUGCCGUCCGUCUACCACCCUUACAPCCAGCCCCAGGGCGUCCCGCCGGCCGAGAGCAGGUACCUCCGCACCUGGCUGGAGCCGGCGCCGCGCGGCGAAGCGGCCCCGGGGCAGGGCCAGGCGGCGGUGAAGGCGGAGCCGCUGCUGGGCGCGCCUGGGGAGCUGCUCAAЖCAGGGCACGCCCGAGUACAGUUUGGAAЖCUUCGGCGGGCAGGGAGGCCGUGCUGUCUAAUCAAAGЖCCCGGCUACGGGGЖCAAUAAAAUUUGCGAAGGAAGCGAGGACAAAGAGAGGCCGGAUCAAACCAACCCCUCCGCCAACUGGCUGCACGCUCGCUCUUCCCGGAAAAAGCGCUGUCCCUACACCAAAUACCAGACGCUGGAGCUAGAGAAGGAGUUUCUGUUCAAUAUGUACCUCACCAGGGЖCCGUAGGCACGAAGUGGCCAGACUCCUCAAUCUGAGUGAGAGЖCAAGUCAAAAUCUGGUUUCAGAACCGGCGGAUGAAAAUGAAGAAAAUGAAUAAGGAGCAGGGCAAAGAGUAAAGAUUAAAGAUUACCCCCAGUCCUCCCUAGCUCUUCCCCAUCUCACUCUUAGUUAUGUGACGACUGCAAAGCCAGUGCUGUCUGGGAUGUAUUCAAGUGAAUGGGGAAGGGAGUCUCUCUUCCAAGUCCUPUAUCUGCACCUAGAACCUCCCUCCUUUCCUUUGCCCUUACCUGUCUCUCUCUUCUCUCUAGGUGUCAGGAGAAAGUUUUGUUGAUUUAGAAGAUAGAAAUAGUUGGUUCCUAAGAAUGUGAUGGGCCACAAGGAAAGAGAGACCCCAGUCAAGCUCCUAGUAUGCCCUGUAAUUUUUCUGGGAAGUCCUAGCCCCUCACUUCCAGCUUGCCUGUUUCUUCUCUACACCCACCCAAAAGUCACCCAGGGACACUCCAACUCUACACAGCUCAGCAGACAPCCACACACAGUAAUGGGGUGAGCUCACAACCACCAUUCAGUCAAGUGAGGUGACACUCCAGUUGCAGACCAUCGCACACCAAAUUUGGCAAAACAGCCCUCAGACUGUCAGGCAAGCCCGGGUUCUACCCCUAAUGCAAAUACCCACCAGGGAGAUGUCUAGAGGCAGACUCCUGAGUGAGGUGUUGCAGCCCAAAGGCUGCAGCAUUGCCAUACCAUUCCCAUGGAGUUGCCAACUAUUCUCAGGCCAAGGGCCAUGGGGAAGAUGGAGCAAACCUAGCCCCCAAGCCGGUGGGCUAGAAAGUACAAGAAAAGGCAGCACGUGGUUUUAUGAAGCUAUCUUAGGUGGAGCUACUCCCCACCPCCCACCAACAUAUACAUUUUGUUGCAGGAAAUGUUUAAUUCCGCAUGAUGUUUCCCUCUCCUUCCAACAAAAGAAGGUCAAACUGUGGGUCGUAGAGCCUUGACAAUGUUGUCCUCCUGUUCAUCUGUGCACCACUUGACAGЖCUGUAGCUUCUCUUGCUCUCGACCGGCCCUGCAUUCUUCCGCACCCUCCCUAGCUCUGAAAUCAACUCUCUUCGGUCGUAUCCACCUUGCACCCGCAAGUCAAGCCGCCCCUUGUAGAAAAAUCCCUCCACCUUCCGUUCCCCGCUAGGUCAACCCCACUGUAGACAGGAAAGCCAGGCCAGGAGAGUCCGAAUGAGAAUUUAUUGUGAAUCGAUUCCCAAGCUCCCUUCCGGGACAAGUGGUCUGGGACAGGGAGGAGCAACGGCCCCAGCGCGCAACGCUCUGCGCGUUCCPCCGAAUCCCGUCGGCUUCUCGACCCACGCAGAGAAGCCCCGGGCUUGGCGGCUCUAGCCCCAGCGCCAAAGGAGЖCCCGCCCCAGGGCCGGGCUUGGCCUCCUGCUUCAUGGGCCUGGAUGCAGAUCUGCGUGGCUGGUGCGUGCGCGCGCUUCUGGGAAACAGUCCCGCGUGCAAAGGAAAGGGGCAAAAUGGCACCUAAGCAUCAGAUGGAAGCUUACUCUCUGCUUCCGUUCCUCCCCCUGCUCCCCUACUUCUCAGUCCCCUUCAAUUUGUAGЖCUCUUGCUCCUGCUUCUCCUGAUCCUGCAAGGGGЖCAUUCCAGUAGAAGUUUUUUGCUUUGUCGGUGGCUGUCGUGAAAUUGUGCUUGUGUUUCGUGAUUUCUUUGGGGGUGAUUGUCUCGCUUGUUUUCAGUUGUCGAUUAUAUGGGAGGGUUCUGGGUGGGAGUGGGGAGGGCGAGGGGCCUAGAGCUCUAAUUGUUUGUUUUGGAAGAAAAAAAGAAAAAGAACAAAAAAUAUAUAUCACUCUAGAAAAUAAA
Sequence (SHORT NAMES ENCODING)	ACACCGGUCCGGGUGCCACCUCUCCCUGCUUGGGCGCCGCCGCGCGAGCGCUUCCCUUCCCCCUGCAAGCGCCCGGAUAAUGUCUGAGAAUGUCCAUUUCUGGGm6ACGCUUAGCAGCUAUUAUGUCGACUCGAUCAUAAGUCACGAGAGUGAGGACGCGCCUCCAGCCAAGUUUCCUUCUGGCCAGUACGCGAGCUCGCGGCAGCCGGGCCACGCGGAGCACCUGGAGUUCCCCUCGUGCAGCUUCCAGCCCAAAGCGCCGGUGUUCGGCGCCUCCUGGGCGCCGCUGAGCCCGCACGCGUCCGGGAGCCUGCCGUCCGUCUACCACCCUUACAYCCAGCCCCAGGGCGUCCCGCCGGCCGAGAGCAGGUACCUCCGCACCUGGCUGGAGCCGGCGCCGCGCGGCGAAGCGGCCCCGGGGCAGGGCCAGGCGGCGGUGAAGGCGGAGCCGCUGCUGGGCGCGCCUGGGGAGCUGCUCAAm6ACAGGGCACGCCCGAGUACAGUUUGGAAm6ACUUCGGCGGGCAGGGAGGCCGUGCUGUCUAAUCAAAGm6ACCCGGCUACGGGGm6ACAAUAAAAUUUGCGAAGGAAGCGAGGACAAAGAGAGGCCGGAUCAAACCAACCCCUCCGCCAACUGGCUGCACGCUCGCUCUUCCCGGAAAAAGCGCUGUCCCUACACCAAAUACCAGACGCUGGAGCUAGAGAAGGAGUUUCUGUUCAAUAUGUACCUCACCAGGGm6ACCGUAGGCACGAAGUGGCCAGACUCCUCAAUCUGAGUGAGAGm6ACAAGUCAAAAUCUGGUUUCAGAACCGGCGGAUGAAAAUGAAGAAAAUGAAUAAGGAGCAGGGCAAAGAGUAAAGAUUAAAGAUUACCCCCAGUCCUCCCUAGCUCUUCCCCAUCUCACUCUUAGUUAUGUGACGACUGCAAAGCCAGUGCUGUCUGGGAUGUAUUCAAGUGAAUGGGGAAGGGAGUCUCUCUUCCAAGUCCUYUAUCUGCACCUAGAACCUCCCUCCUUUCCUUUGCCCUUACCUGUCUCUCUCUUCUCUCUAGGUGUCAGGAGAAAGUUUUGUUGAUUUAGAAGAUAGAAAUAGUUGGUUCCUAAGAAUGUGAUGGGCCACAAGGAAAGAGAGACCCCAGUCAAGCUCCUAGUAUGCCCUGUAAUUUUUCUGGGAAGUCCUAGCCCCUCACUUCCAGCUUGCCUGUUUCUUCUCUACACCCACCCAAAAGUCACCCAGGGACACUCCAACUCUACACAGCUCAGCAGACAYCCACACACAGUAAUGGGGUGAGCUCACAACCACCAUUCAGUCAAGUGAGGUGACACUCCAGUUGCAGACCAUCGCACACCAAAUUUGGCAAAACAGCCCUCAGACUGUCAGGCAAGCCCGGGUUCUACCCCUAAUGCAAAUACCCACCAGGGAGAUGUCUAGAGGCAGACUCCUGAGUGAGGUGUUGCAGCCCAAAGGCUGCAGCAUUGCCAUACCAUUCCCAUGGAGUUGCCAACUAUUCUCAGGCCAAGGGCCAUGGGGAAGAUGGAGCAAACCUAGCCCCCAAGCCGGUGGGCUAGAAAGUACAAGAAAAGGCAGCACGUGGUUUUAUGAAGCUAUCUUAGGUGGAGCUACUCCCCACCYCCCACCAACAUAUACAUUUUGUUGCAGGAAAUGUUUAAUUCCGCAUGAUGUUUCCCUCUCCUUCCAACAAAAGAAGGUCAAACUGUGGGUCGUAGAGCCUUGACAAUGUUGUCCUCCUGUUCAUCUGUGCACCACUUGACAGm6ACUGUAGCUUCUCUUGCUCUCGACCGGCCCUGCAUUCUUCCGCACCCUCCCUAGCUCUGAAAUCAACUCUCUUCGGUCGUAUCCACCUUGCACCCGCAAGUCAAGCCGCCCCUUGUAGAAAAAUCCCUCCACCUUCCGUUCCCCGCUAGGUCAACCCCACUGUAGACAGGAAAGCCAGGCCAGGAGAGUCCGAAUGAGAAUUUAUUGUGAAUCGAUUCCCAAGCUCCCUUCCGGGACAAGUGGUCUGGGACAGGGAGGAGCAACGGCCCCAGCGCGCAACGCUCUGCGCGUUCCYCCGAAUCCCGUCGGCUUCUCGACCCACGCAGAGAAGCCCCGGGCUUGGCGGCUCUAGCCCCAGCGCCAAAGGAGm6ACCCGCCCCAGGGCCGGGCUUGGCCUCCUGCUUCAUGGGCCUGGAUGCAGAUCUGCGUGGCUGGUGCGUGCGCGCGCUUCUGGGAAACAGUCCCGCGUGCAAAGGAAAGGGGCAAAAUGGCACCUAAGCAUCAGAUGGAAGCUUACUCUCUGCUUCCGUUCCUCCCCCUGCUCCCCUACUUCUCAGUCCCCUUCAAUUUGUAGm6ACUCUUGCUCCUGCUUCUCCUGAUCCUGCAAGGGGm6ACAUUCCAGUAGAAGUUUUUUGCUUUGUCGGUGGCUGUCGUGAAAUUGUGCUUGUGUUUCGUGAUUUCUUUGGGGGUGAUUGUCUCGCUUGUUUUCAGUUGUCGAUUAUAUGGGAGGGUUCUGGGUGGGAGUGGGGAGGGCGAGGGGCCUAGAGCUCUAAUUGUUUGUUUUGGAAGAAAAAAAGAAAAAGAACAAAAAAUAUAUAUCACUCUAGAAAAUAAA
Sequence (MODOMICS CODE ENCODING)	ACACCGGUCCGGGUGCCACCUCUCCCUGCUUGGGCGCCGCCGCGCGAGCGCUUCCCUUCCCCCUGCAAGCGCCCGGAUAAUGUCUGAGAAUGUCCAUUUCUGGG2000000006ACGCUUAGCAGCUAUUAUGUCGACUCGAUCAUAAGUCACGAGAGUGAGGACGCGCCUCCAGCCAAGUUUCCUUCUGGCCAGUACGCGAGCUCGCGGCAGCCGGGCCACGCGGAGCACCUGGAGUUCCCCUCGUGCAGCUUCCAGCCCAAAGCGCCGGUGUUCGGCGCCUCCUGGGCGCCGCUGAGCCCGCACGCGUCCGGGAGCCUGCCGUCCGUCUACCACCCUUACA2000000009UCCAGCCCCAGGGCGUCCCGCCGGCCGAGAGCAGGUACCUCCGCACCUGGCUGGAGCCGGCGCCGCGCGGCGAAGCGGCCCCGGGGCAGGGCCAGGCGGCGGUGAAGGCGGAGCCGCUGCUGGGCGCGCCUGGGGAGCUGCUCAA2000000006ACAGGGCACGCCCGAGUACAGUUUGGAA2000000006ACUUCGGCGGGCAGGGAGGCCGUGCUGUCUAAUCAAAG2000000006ACCCGGCUACGGGG2000000006ACAAUAAAAUUUGCGAAGGAAGCGAGGACAAAGAGAGGCCGGAUCAAACCAACCCCUCCGCCAACUGGCUGCACGCUCGCUCUUCCCGGAAAAAGCGCUGUCCCUACACCAAAUACCAGACGCUGGAGCUAGAGAAGGAGUUUCUGUUCAAUAUGUACCUCACCAGGG2000000006ACCGUAGGCACGAAGUGGCCAGACUCCUCAAUCUGAGUGAGAG2000000006ACAAGUCAAAAUCUGGUUUCAGAACCGGCGGAUGAAAAUGAAGAAAAUGAAUAAGGAGCAGGGCAAAGAGUAAAGAUUAAAGAUUACCCCCAGUCCUCCCUAGCUCUUCCCCAUCUCACUCUUAGUUAUGUGACGACUGCAAAGCCAGUGCUGUCUGGGAUGUAUUCAAGUGAAUGGGGAAGGGAGUCUCUCUUCCAAGUCCU2000000009UUAUCUGCACCUAGAACCUCCCUCCUUUCCUUUGCCCUUACCUGUCUCUCUCUUCUCUCUAGGUGUCAGGAGAAAGUUUUGUUGAUUUAGAAGAUAGAAAUAGUUGGUUCCUAAGAAUGUGAUGGGCCACAAGGAAAGAGAGACCCCAGUCAAGCUCCUAGUAUGCCCUGUAAUUUUUCUGGGAAGUCCUAGCCCCUCACUUCCAGCUUGCCUGUUUCUUCUCUACACCCACCCAAAAGUCACCCAGGGACACUCCAACUCUACACAGCUCAGCAGACA2000000009UCCACACACAGUAAUGGGGUGAGCUCACAACCACCAUUCAGUCAAGUGAGGUGACACUCCAGUUGCAGACCAUCGCACACCAAAUUUGGCAAAACAGCCCUCAGACUGUCAGGCAAGCCCGGGUUCUACCCCUAAUGCAAAUACCCACCAGGGAGAUGUCUAGAGGCAGACUCCUGAGUGAGGUGUUGCAGCCCAAAGGCUGCAGCAUUGCCAUACCAUUCCCAUGGAGUUGCCAACUAUUCUCAGGCCAAGGGCCAUGGGGAAGAUGGAGCAAACCUAGCCCCCAAGCCGGUGGGCUAGAAAGUACAAGAAAAGGCAGCACGUGGUUUUAUGAAGCUAUCUUAGGUGGAGCUACUCCCCACC2000000009UCCCACCAACAUAUACAUUUUGUUGCAGGAAAUGUUUAAUUCCGCAUGAUGUUUCCCUCUCCUUCCAACAAAAGAAGGUCAAACUGUGGGUCGUAGAGCCUUGACAAUGUUGUCCUCCUGUUCAUCUGUGCACCACUUGACAG2000000006ACUGUAGCUUCUCUUGCUCUCGACCGGCCCUGCAUUCUUCCGCACCCUCCCUAGCUCUGAAAUCAACUCUCUUCGGUCGUAUCCACCUUGCACCCGCAAGUCAAGCCGCCCCUUGUAGAAAAAUCCCUCCACCUUCCGUUCCCCGCUAGGUCAACCCCACUGUAGACAGGAAAGCCAGGCCAGGAGAGUCCGAAUGAGAAUUUAUUGUGAAUCGAUUCCCAAGCUCCCUUCCGGGACAAGUGGUCUGGGACAGGGAGGAGCAACGGCCCCAGCGCGCAACGCUCUGCGCGUUCC2000000009UCCGAAUCCCGUCGGCUUCUCGACCCACGCAGAGAAGCCCCGGGCUUGGCGGCUCUAGCCCCAGCGCCAAAGGAG2000000006ACCCGCCCCAGGGCCGGGCUUGGCCUCCUGCUUCAUGGGCCUGGAUGCAGAUCUGCGUGGCUGGUGCGUGCGCGCGCUUCUGGGAAACAGUCCCGCGUGCAAAGGAAAGGGGCAAAAUGGCACCUAAGCAUCAGAUGGAAGCUUACUCUCUGCUUCCGUUCCUCCCCCUGCUCCCCUACUUCUCAGUCCCCUUCAAUUUGUAG2000000006ACUCUUGCUCCUGCUUCUCCUGAUCCUGCAAGGGG2000000006ACAUUCCAGUAGAAGUUUUUUGCUUUGUCGGUGGCUGUCGUGAAAUUGUGCUUGUGUUUCGUGAUUUCUUUGGGGGUGAUUGUCUCGCUUGUUUUCAGUUGUCGAUUAUAUGGGAGGGUUCUGGGUGGGAGUGGGGAGGGCGAGGGGCCUAGAGCUCUAAUUGUUUGUUUUGGAAGAAAAAAAGAAAAAGAACAAAAAAUAUAUAUCACUCUAGAAAAUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	105	334	479	507	545	559	727	770	973	1252	1615	1758	2052	2127	2330	2365
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	Y	m6A	Y	m6A	m6A	m6A
Genomic Coordinates	17:48626254:-	17:48626025:-	17:48625880:-	17:48625852:-	17:48625814:-	17:48625800:-	17:48623015:-	17:48622972:-	17:48622769:-	17:48622490:-	17:48622127:-	17:48621984:-	17:48621690:-	17:48621615:-	17:48621412:-	17:48621377:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL 93arJtwJmuS9 BkoLW2CBToyL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	gBgcfFQ5WN9C BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8