Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000574735
Gene ID: ENSG00000167840
Gene Name: ZNF232
Sequence (UNICHARACTER ENCODING) ACCCGGCCGCUCCAGUCCAGUCGUGCAGGCGGCGCGCUCUUUCUCGCUCCGCUCAAGUCCAGGAACCGGUUCCCGGGCUCCCAGCCUCUCGGCAGCGCCCACGCGCCUGGGCCAAAGUCCGCGAACGGAAGCCGGCGGCGAGGAGGAUUCUGGGAGUUGGAGGCCGAGGCUGCGACCUGCGCAGGCGCAAACCUGCCCCUGGGGUGAGGGCUGUAAGUGGCGCGAUUCGCGGCAGCGCCCCGAUGGAACCUCCUGGUCCUGUGAGGGUACACAGGGACAAGAGAAGAUGAUGAUGAUGGGACCAAAGGAAGAGGAACAGUCUUGUGAGUAUGAGACCAGGCUACCUGGGAACCACUCUACCAGUCAAGAGAUCUUCCGCCAACGCUUCAGGCAUCUCCGCUACCAGGAGACUCCUGGUCCCCGGGAGGCCUUGAGCCAACUACGAGUACUCUGCUGUGAGUGGCUGAGGCCAGAGAAACACACGAAGGAGCAGAUCCUGGAGUUCCUGGUGCUGGAACAAUUCUUGACCAPCCUGCCUGAGGAGCUCCAAUCCUGGGUGCGGGGACAUCACCCUAAGAGUGGAGAGGAGGCUGUGACUGUGCUGGAGGAUUUAGAGAAAGGЖCUUGAACCAGAGCCGCAGGUGGGAAGGGGGAUUUGGUCUGUUAUGGGAGCCAGAUUGAUGACCUUCAGGCUGGЖCCGAGGGGCAGCUGUAGGGGGAGGUGCCAAGUUCAAACCUCUCUUGGGCCAGGUAGAGCAGUUAGUAUGUGUUUCUGUGUCUGUCUUUUCUGCCCUCGAGCCCUGAAUGAGAAAGAGЖCUCUAGCUCCUCUUCUUCCCUUGUGCUGACUCUGAGGAGGCUCUCUAAAGUCUCCUUGGAAGCUUUGGUCCAAGGAGGGUCACAUCUGCAAGUGUCCAGGCAGGGGACAGAAACCACACUAGUAAUUUGAAGAAAAUUUAAACUGAGUGGUGCCUGAUCACCUCCAGGUCCCAGGCCCUGCACAUGGACCUGCACAGGAAGAGCCAUGGGAGAAGAAGGAAUCUCUGGGAGCAGCCCAGGAAGCACUGAGCAPCCAGCUCCAGCCUAAGGAGACCCAGCCUUUCCCAAAGAGUGAACAGGUAUAUUUACAUUUUCUGUCAGUUGUUACAGAAGAUGGCCCAGAGCCCAAGGACAAAGGAUCAUUGCCACAACCACCCAUUACUGAAGUGGAAUCACAGGUGUUCUCAGAAAAACUUGCUACUGACACCUCUACAUUUGAAGCUACCUCUGAGGGUACCUUAGAЖCUGCAGCAGAGAAAUCCCAAAGCGGAGAGЖCUGAGGUGGUCCCCUGCCCAGGAGGAAAGUUUCAGGCAGAUGGUUGUCAUCCAUAAGGAAAUUCCCACAGGGAAGAAAGЖCCAUGAAUGUAGUGAAUGUGGUAAAACCUUCAUUUAUAЖCUCACAUCUUGUUGUCCACCAGAGAGUUCAUUCUGGAGAGAAACCCUAUAAGUGUAGUGЖCUGUGGGAAAACUUUCAAACAGAGCUCAAACCUCGGUCAGCAUCAGAGAAUUCAUACAGGAGAGAAACCCUUCGAAUGUAAUGAAUGUGGGAAGGCCUUCAGAUGGGGUGCUCAUCUUGUUCAGCAUCAGAGGAUUCACUCAGGAGAGAAGCCCUAUGAGUGUAAUGAGUGUGGGAAGGCCUPUAGUCAAAGCUCAUAUCUAAGUCAGCAUCGGAGAAUUCACAGUGGAGAGAAACCUUUUAUAUGUAAAGAAUGUGGGAAAGCUUAUGGAUGGUGCUCAGAGCUCAUUAGACAUCGGAGAGUUCAUGCCAGAAAAGAGCCUUCCCAUUGAAUUGAAGGGGAGAACGUCUCCAGACAGAAUUCUACAUCGGUCUAAUCUACUPUAGGЖCUGGAUCCCAUAAAAGUUAUAAGUUCCUUAAG
Sequence (SHORT NAMES ENCODING) ACCCGGCCGCUCCAGUCCAGUCGUGCAGGCGGCGCGCUCUUUCUCGCUCCGCUCAAGUCCAGGAACCGGUUCCCGGGCUCCCAGCCUCUCGGCAGCGCCCACGCGCCUGGGCCAAAGUCCGCGAACGGAAGCCGGCGGCGAGGAGGAUUCUGGGAGUUGGAGGCCGAGGCUGCGACCUGCGCAGGCGCAAACCUGCCCCUGGGGUGAGGGCUGUAAGUGGCGCGAUUCGCGGCAGCGCCCCGAUGGAACCUCCUGGUCCUGUGAGGGUACACAGGGACAAGAGAAGAUGAUGAUGAUGGGACCAAAGGAAGAGGAACAGUCUUGUGAGUAUGAGACCAGGCUACCUGGGAACCACUCUACCAGUCAAGAGAUCUUCCGCCAACGCUUCAGGCAUCUCCGCUACCAGGAGACUCCUGGUCCCCGGGAGGCCUUGAGCCAACUACGAGUACUCUGCUGUGAGUGGCUGAGGCCAGAGAAACACACGAAGGAGCAGAUCCUGGAGUUCCUGGUGCUGGAACAAUUCUUGACCAYCCUGCCUGAGGAGCUCCAAUCCUGGGUGCGGGGACAUCACCCUAAGAGUGGAGAGGAGGCUGUGACUGUGCUGGAGGAUUUAGAGAAAGGm6ACUUGAACCAGAGCCGCAGGUGGGAAGGGGGAUUUGGUCUGUUAUGGGAGCCAGAUUGAUGACCUUCAGGCUGGm6ACCGAGGGGCAGCUGUAGGGGGAGGUGCCAAGUUCAAACCUCUCUUGGGCCAGGUAGAGCAGUUAGUAUGUGUUUCUGUGUCUGUCUUUUCUGCCCUCGAGCCCUGAAUGAGAAAGAGm6ACUCUAGCUCCUCUUCUUCCCUUGUGCUGACUCUGAGGAGGCUCUCUAAAGUCUCCUUGGAAGCUUUGGUCCAAGGAGGGUCACAUCUGCAAGUGUCCAGGCAGGGGACAGAAACCACACUAGUAAUUUGAAGAAAAUUUAAACUGAGUGGUGCCUGAUCACCUCCAGGUCCCAGGCCCUGCACAUGGACCUGCACAGGAAGAGCCAUGGGAGAAGAAGGAAUCUCUGGGAGCAGCCCAGGAAGCACUGAGCAYCCAGCUCCAGCCUAAGGAGACCCAGCCUUUCCCAAAGAGUGAACAGGUAUAUUUACAUUUUCUGUCAGUUGUUACAGAAGAUGGCCCAGAGCCCAAGGACAAAGGAUCAUUGCCACAACCACCCAUUACUGAAGUGGAAUCACAGGUGUUCUCAGAAAAACUUGCUACUGACACCUCUACAUUUGAAGCUACCUCUGAGGGUACCUUAGAm6ACUGCAGCAGAGAAAUCCCAAAGCGGAGAGm6ACUGAGGUGGUCCCCUGCCCAGGAGGAAAGUUUCAGGCAGAUGGUUGUCAUCCAUAAGGAAAUUCCCACAGGGAAGAAAGm6ACCAUGAAUGUAGUGAAUGUGGUAAAACCUUCAUUUAUAm6ACUCACAUCUUGUUGUCCACCAGAGAGUUCAUUCUGGAGAGAAACCCUAUAAGUGUAGUGm6ACUGUGGGAAAACUUUCAAACAGAGCUCAAACCUCGGUCAGCAUCAGAGAAUUCAUACAGGAGAGAAACCCUUCGAAUGUAAUGAAUGUGGGAAGGCCUUCAGAUGGGGUGCUCAUCUUGUUCAGCAUCAGAGGAUUCACUCAGGAGAGAAGCCCUAUGAGUGUAAUGAGUGUGGGAAGGCCUYUAGUCAAAGCUCAUAUCUAAGUCAGCAUCGGAGAAUUCACAGUGGAGAGAAACCUUUUAUAUGUAAAGAAUGUGGGAAAGCUUAUGGAUGGUGCUCAGAGCUCAUUAGACAUCGGAGAGUUCAUGCCAGAAAAGAGCCUUCCCAUUGAAUUGAAGGGGAGAACGUCUCCAGACAGAAUUCUACAUCGGUCUAAUCUACUYUAGGm6ACUGGAUCCCAUAAAAGUUAUAAGUUCCUUAAG
Sequence (MODOMICS CODE ENCODING) ACCCGGCCGCUCCAGUCCAGUCGUGCAGGCGGCGCGCUCUUUCUCGCUCCGCUCAAGUCCAGGAACCGGUUCCCGGGCUCCCAGCCUCUCGGCAGCGCCCACGCGCCUGGGCCAAAGUCCGCGAACGGAAGCCGGCGGCGAGGAGGAUUCUGGGAGUUGGAGGCCGAGGCUGCGACCUGCGCAGGCGCAAACCUGCCCCUGGGGUGAGGGCUGUAAGUGGCGCGAUUCGCGGCAGCGCCCCGAUGGAACCUCCUGGUCCUGUGAGGGUACACAGGGACAAGAGAAGAUGAUGAUGAUGGGACCAAAGGAAGAGGAACAGUCUUGUGAGUAUGAGACCAGGCUACCUGGGAACCACUCUACCAGUCAAGAGAUCUUCCGCCAACGCUUCAGGCAUCUCCGCUACCAGGAGACUCCUGGUCCCCGGGAGGCCUUGAGCCAACUACGAGUACUCUGCUGUGAGUGGCUGAGGCCAGAGAAACACACGAAGGAGCAGAUCCUGGAGUUCCUGGUGCUGGAACAAUUCUUGACCA2000000009UCCUGCCUGAGGAGCUCCAAUCCUGGGUGCGGGGACAUCACCCUAAGAGUGGAGAGGAGGCUGUGACUGUGCUGGAGGAUUUAGAGAAAGG2000000006ACUUGAACCAGAGCCGCAGGUGGGAAGGGGGAUUUGGUCUGUUAUGGGAGCCAGAUUGAUGACCUUCAGGCUGG2000000006ACCGAGGGGCAGCUGUAGGGGGAGGUGCCAAGUUCAAACCUCUCUUGGGCCAGGUAGAGCAGUUAGUAUGUGUUUCUGUGUCUGUCUUUUCUGCCCUCGAGCCCUGAAUGAGAAAGAG2000000006ACUCUAGCUCCUCUUCUUCCCUUGUGCUGACUCUGAGGAGGCUCUCUAAAGUCUCCUUGGAAGCUUUGGUCCAAGGAGGGUCACAUCUGCAAGUGUCCAGGCAGGGGACAGAAACCACACUAGUAAUUUGAAGAAAAUUUAAACUGAGUGGUGCCUGAUCACCUCCAGGUCCCAGGCCCUGCACAUGGACCUGCACAGGAAGAGCCAUGGGAGAAGAAGGAAUCUCUGGGAGCAGCCCAGGAAGCACUGAGCA2000000009UCCAGCUCCAGCCUAAGGAGACCCAGCCUUUCCCAAAGAGUGAACAGGUAUAUUUACAUUUUCUGUCAGUUGUUACAGAAGAUGGCCCAGAGCCCAAGGACAAAGGAUCAUUGCCACAACCACCCAUUACUGAAGUGGAAUCACAGGUGUUCUCAGAAAAACUUGCUACUGACACCUCUACAUUUGAAGCUACCUCUGAGGGUACCUUAGA2000000006ACUGCAGCAGAGAAAUCCCAAAGCGGAGAG2000000006ACUGAGGUGGUCCCCUGCCCAGGAGGAAAGUUUCAGGCAGAUGGUUGUCAUCCAUAAGGAAAUUCCCACAGGGAAGAAAG2000000006ACCAUGAAUGUAGUGAAUGUGGUAAAACCUUCAUUUAUA2000000006ACUCACAUCUUGUUGUCCACCAGAGAGUUCAUUCUGGAGAGAAACCCUAUAAGUGUAGUG2000000006ACUGUGGGAAAACUUUCAAACAGAGCUCAAACCUCGGUCAGCAUCAGAGAAUUCAUACAGGAGAGAAACCCUUCGAAUGUAAUGAAUGUGGGAAGGCCUUCAGAUGGGGUGCUCAUCUUGUUCAGCAUCAGAGGAUUCACUCAGGAGAGAAGCCCUAUGAGUGUAAUGAGUGUGGGAAGGCCU2000000009UUAGUCAAAGCUCAUAUCUAAGUCAGCAUCGGAGAAUUCACAGUGGAGAGAAACCUUUUAUAUGUAAAGAAUGUGGGAAAGCUUAUGGAUGGUGCUCAGAGCUCAUUAGACAUCGGAGAGUUCAUGCCAGAAAAGAGCCUUCCCAUUGAAUUGAAGGGGAGAACGUCUCCAGACAGAAUUCUACAUCGGUCUAAUCUACU2000000009UUAGG2000000006ACUGGAUCCCAUAAAAGUUAUAAGUUCCUUAAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 531 622 696 814 1067 1278 1308 1388 1427 1487 1670 1870 1875
Modification Positions Y m6A m6A m6A Y m6A m6A m6A m6A m6A Y Y m6A
Genomic Coordinates 17:5109503:- 17:5109412:- 17:5109338:- 17:5109220:- 17:5108967:- 17:5106364:- 17:5106334:- 17:5106254:- 17:5106215:- 17:5106155:- 17:5105972:- 17:5105772:- 17:5105767:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs dknfVe6BK8aP
Yfn77uLS5tv8
6AyXsheySjfx
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
dknfVe6BK8aP
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
Lny8GcCeVGc9
Yfn77uLS5tv8
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
KRfQJWH4K5KH
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8
6AyXsheySjfx
aHkqKEJkRYyb
gZuvgwMuBfgh
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
Yfn77uLS5tv8