Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000612672
Gene ID: ENSG00000271447
Gene Name: MMP28
Sequence (UNICHARACTER ENCODING) AGCAGCGGCGCGGGGUGGGUGGGGCGGGAGUGCCGGGCCUCCGCCCCCUCCGCCUGCCUUUCCUUCCUCCCUCCCUCGGUCCCCGGGGCCGGCGGACCCGCGGGCAGGCACUGCCCGGGCUGGACGACGUCUGGCCGGCUCCCGGCGAAGGGCAGCGGAGGAGCGGCCCAGAGCGCGCAGCUAGGGCACUGGCGAAACCCCGGGACAGUCCCUCUCCGUGCGGGGGCGGCGCAGAGCAGUCCCAUCCCCGGGGUCCCGGGCGCGGCUGACUGCCGGCUGGUUCCCUGCGCGCAGUAGCUCCCCGAGCCGGGCUGCACCGGAGGCGGCGAGAUGGUCGCGCGCGUCGGCCUCCUGCUGCGCGCCCUGCAGCUGCUACUGUGGGGCCACCUGGACGCCCAGCCCGCGGAGCGCGGAGGCCAGGAGCUGCGCAAGGAGGCGGAGGCAUUCCUAGAGAAGUACGGAUACCUCAAUGAACAGGUCCCCAAAGCUCCCACCUCCACUCGAUUCAGCGAUGCCAUCAGAGCGUUUCAGUGGGUGUCCCAGCUACCUGUCAGCGGCGUGUUGGACCGCGCCACCCUGCGCCAGAUGACUCGUCCCCGCUGCGGGGUUACAGAUACCAACAGUUAUGCGGCCUGGGCUGAGAGGAUCAGUGACUUGUUUGCUAGACACCGGACCAAAAUGAGGCGUAAGAAACGCUUUGCAAAGCAAGGUGAGCACUGUUAAAAUCCGGCUAGGCCAAGAUUUCCCAAUGUCUUGAAGCCAAUGGCUAGGAAAACAGCUGAGCCUGGGЖCUGGЖCUUUGUCAGUAACCUCUCUUCCCUAGGGCACGGGAGGAGUGGGUGAAUAGGACCUCUUGGCUUGAGGACCAUGAUUGUGAAUACAGACAUUUAAUUCAGAAUGACACCUACAUUGAUGAAUUUUCAUUGUACAAGUGUUUUUCCAGAUCAAACACAAAACCCAUGUAAUUCCUUGAUAAAUUUUCAAUGCAGGGCAGAUAAACUGUUGCUAACAUUUUUCAUUUAUAUUUACUGAAGUUAUUUUCAUCAGAAUUCAUUCUUUUUCAUAAGUUAUUAAACAAAUGUGUGAUCUAUUGA
Sequence (SHORT NAMES ENCODING) AGCAGCGGCGCGGGGUGGGUGGGGCGGGAGUGCCGGGCCUCCGCCCCCUCCGCCUGCCUUUCCUUCCUCCCUCCCUCGGUCCCCGGGGCCGGCGGACCCGCGGGCAGGCACUGCCCGGGCUGGACGACGUCUGGCCGGCUCCCGGCGAAGGGCAGCGGAGGAGCGGCCCAGAGCGCGCAGCUAGGGCACUGGCGAAACCCCGGGACAGUCCCUCUCCGUGCGGGGGCGGCGCAGAGCAGUCCCAUCCCCGGGGUCCCGGGCGCGGCUGACUGCCGGCUGGUUCCCUGCGCGCAGUAGCUCCCCGAGCCGGGCUGCACCGGAGGCGGCGAGAUGGUCGCGCGCGUCGGCCUCCUGCUGCGCGCCCUGCAGCUGCUACUGUGGGGCCACCUGGACGCCCAGCCCGCGGAGCGCGGAGGCCAGGAGCUGCGCAAGGAGGCGGAGGCAUUCCUAGAGAAGUACGGAUACCUCAAUGAACAGGUCCCCAAAGCUCCCACCUCCACUCGAUUCAGCGAUGCCAUCAGAGCGUUUCAGUGGGUGUCCCAGCUACCUGUCAGCGGCGUGUUGGACCGCGCCACCCUGCGCCAGAUGACUCGUCCCCGCUGCGGGGUUACAGAUACCAACAGUUAUGCGGCCUGGGCUGAGAGGAUCAGUGACUUGUUUGCUAGACACCGGACCAAAAUGAGGCGUAAGAAACGCUUUGCAAAGCAAGGUGAGCACUGUUAAAAUCCGGCUAGGCCAAGAUUUCCCAAUGUCUUGAAGCCAAUGGCUAGGAAAACAGCUGAGCCUGGGm6ACUGGm6ACUUUGUCAGUAACCUCUCUUCCCUAGGGCACGGGAGGAGUGGGUGAAUAGGACCUCUUGGCUUGAGGACCAUGAUUGUGAAUACAGACAUUUAAUUCAGAAUGACACCUACAUUGAUGAAUUUUCAUUGUACAAGUGUUUUUCCAGAUCAAACACAAAACCCAUGUAAUUCCUUGAUAAAUUUUCAAUGCAGGGCAGAUAAACUGUUGCUAACAUUUUUCAUUUAUAUUUACUGAAGUUAUUUUCAUCAGAAUUCAUUCUUUUUCAUAAGUUAUUAAACAAAUGUGUGAUCUAUUGA
Sequence (MODOMICS CODE ENCODING) AGCAGCGGCGCGGGGUGGGUGGGGCGGGAGUGCCGGGCCUCCGCCCCCUCCGCCUGCCUUUCCUUCCUCCCUCCCUCGGUCCCCGGGGCCGGCGGACCCGCGGGCAGGCACUGCCCGGGCUGGACGACGUCUGGCCGGCUCCCGGCGAAGGGCAGCGGAGGAGCGGCCCAGAGCGCGCAGCUAGGGCACUGGCGAAACCCCGGGACAGUCCCUCUCCGUGCGGGGGCGGCGCAGAGCAGUCCCAUCCCCGGGGUCCCGGGCGCGGCUGACUGCCGGCUGGUUCCCUGCGCGCAGUAGCUCCCCGAGCCGGGCUGCACCGGAGGCGGCGAGAUGGUCGCGCGCGUCGGCCUCCUGCUGCGCGCCCUGCAGCUGCUACUGUGGGGCCACCUGGACGCCCAGCCCGCGGAGCGCGGAGGCCAGGAGCUGCGCAAGGAGGCGGAGGCAUUCCUAGAGAAGUACGGAUACCUCAAUGAACAGGUCCCCAAAGCUCCCACCUCCACUCGAUUCAGCGAUGCCAUCAGAGCGUUUCAGUGGGUGUCCCAGCUACCUGUCAGCGGCGUGUUGGACCGCGCCACCCUGCGCCAGAUGACUCGUCCCCGCUGCGGGGUUACAGAUACCAACAGUUAUGCGGCCUGGGCUGAGAGGAUCAGUGACUUGUUUGCUAGACACCGGACCAAAAUGAGGCGUAAGAAACGCUUUGCAAAGCAAGGUGAGCACUGUUAAAAUCCGGCUAGGCCAAGAUUUCCCAAUGUCUUGAAGCCAAUGGCUAGGAAAACAGCUGAGCCUGGG2000000006ACUGG2000000006ACUUUGUCAGUAACCUCUCUUCCCUAGGGCACGGGAGGAGUGGGUGAAUAGGACCUCUUGGCUUGAGGACCAUGAUUGUGAAUACAGACAUUUAAUUCAGAAUGACACCUACAUUGAUGAAUUUUCAUUGUACAAGUGUUUUUCCAGAUCAAACACAAAACCCAUGUAAUUCCUUGAUAAAUUUUCAAUGCAGGGCAGAUAAACUGUUGCUAACAUUUUUCAUUUAUAUUUACUGAAGUUAUUUUCAUCAGAAUUCAUUCUUUUUCAUAAGUUAUUAAACAAAUGUGUGAUCUAUUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 790 795
Modification Positions m6A m6A
Genomic Coordinates 17:35778807:- 17:35778802:-
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G