Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000575458
Gene ID: ENSG00000004975
Gene Name: DVL2
Sequence (UNICHARACTER ENCODING) AGGGGCCAUUAGCCCUUUGGGUGGGCGGUGGAGCCCGGGAGCGCGCGGGCGAGACCAUGGCGGGUAGCAGCACUGGGGGCGGUGGGGUUGGGGAGACGAAGGUGAUUUACCACCUGGAUGAGGAAGAGACUCCCUACCUGGUGAAGAUCCCUGUCCCCGCCGAGCGCAUCACCCUCGGCGAUUUCAAGAGCGUCCUGCAGCGGCCCGCGGGCGCCAAGUACUUUUUCAAGUCUAUGGAUCAGGAUUUCGGGGUGGUGAAGGAAGAAAUUUCAGAUGACAACGCCCGCCUCCCCUGCUUCAACGGAAGGGUGGUAUCCUGGCUGGUGUCCUCAGAUAAUCCCCAACCCGAGAUGGCCCCUCCAGUCCAUGAGCCUCGGGCAGAACUGGCGCCUCCAGCCCCACCUUUACCUCCUUUGCCACCCGAGAGGACCAGCGGCAUUGGGGACUCAAGGCCUCCAPCCUUCCACCAUGAGAAUCUGGAGCCUGAGACAGAAACCGAGUCAGUAGUGUCACUGAGGCGGGAGCGGCCUCGCAGGAGAGACAGCAGUGAGCAUGGCGCUGGGGGCCACAGGACUGGUGGCCCCUCAAGGCUGGAGCGCCACCUGGCCGGAUACGAGAGCUCCUCUACCCUCAUGACCAGCGAGCUGGAGAGUACCAGCCUGGGGGACUCGGACGAGGAGGACACCAUGAGCAGGUUCAGCAGCUCCACGGAGCAGAGCAGUGCCUCCCGCCUCCUUAAGCGCCACCGGCGGCGAAGGAAGCAGAGGCCACCCCGCCUGGAGAGGACGUCAPCCUUCAGCAGCGUCACAGAUUCCACAAUGUCUCUCAAUAUCAUCACAGUCACGCUAAACAUGGAGAAGUACAACUUCCUGGGUAUCUCCAUUGUUGGCCAGAGCAAUGAGCGGGGAGACGGAGGCAUCUACAUUGGCUCCAUCAUGAAGGGUGGGGCUGUGGCGGCCGACGGGCGCAUUGAGCCAGGGGACAUGCUUUUGCAGGUGAAUGACAUGAACUUUGAGAACAUGAGCAACGAUGACGCUGUGCGGGUGCUGAGGGACAUUGUGCACAAGCCUGGCCCCAUUGUGCUGACUGUGGCCAAGUGCUGGGAUCCCUCUCCUCAGGCCUAUUUCACUCUCCCCCGAAAUGAGCCCAUCCAGCCAAUUGACCCUGCUGCCUGGGUGUCCCAUUCCGCGGCUCUGACUGGCACCUUCCCAGCCUAUCCAGGUUCCUCCUCCAUGAGCACCAUUACAUCUGGAUCGUCUUUGCCUGAUGGCUGUGAAGGCCGGGGUCUCUCCGUCCAUACGGACAUGGCAUCGGUGACCAAGGCCAUGGCAGCUCCAGAGUCUGGACUGGAAGUCCGGGACCGCAUGUGGCUCAAGAUCACCAUCCCUAAUGCCUUUCUGGGCUCGGAUGUGGUUGACUGGCUCUACCAUCACGUGGAGGGCUUUCCUGAGCGGCGGGAGGCCCGCAAGUAUGCCAGCGGGCUGCUCAAAGCAGGCCUGAUCCGACACACCGUCAACAAGAUCACCUUCUCUGAGCAGUGCUAUUACGUCUUCGGAGЖCCUCAGUGGUGGCUGUGAGAGCUACCUAGUCAACCUGUCUCUCAAUGACAACGAUGGCUCCAGUGGGGCUUCAGACCAGGAUACCCUGGCUCCUCUGCCUGGGGCCACCCCCUGGCCCCUGCUGCCCACUUUCUCCUACCAAUACCCUGCCCCACACCCCUACAGCCCGCAGCCUCCACCCUACCAUGAGCUUUCAUCUUACACCUAUGGUGGGGGCAGUGCCAGCAGCCAGCAUAGUGAGGGCAGCCGGAGCAGUGGGUCGACACGGAGUGAUGGGGGGGCAGGGCGCACGGGGAGGCCCGAGGAGCGGGCCCCCGAGUCCAAGUCCGGCAGUGGCAGUGAGUCUGAGCCCPCCAGCCGAGGGGGCAGCCUUCGGCGGGGUGGGGAAGCAAGUGGGACUAGCGAUGGGGGCCCPCCUCCAPCCAGAGGCUCAACUGGGGGUGCCCCUAAUCUCCGAGCCCACCCAGGGCUCCAPCCCUAUGGACCGCCCCCUGGCAUGGCCCUCCCCUACAACCCCAUGAUGGUGGUCAUGAUGCCCCCACCPCCACCPCCAGUCCCUCCAGCAGUGCAGCCUCCGGGGGCCCCUCCAGUCAGAGACCUGGGCUCUGUGCCCCCAGAACUGACAGCCAGCCGCCAAAGCUUCCACAUGGCCAUGGGCAAUCCCAGCGAGUUCUUUGUGGAUGUUAUGUAGCCCACUGUGGGGCCAGGCUGGGCCGGGCGCUCCUGGUGUGUGACUGGGUGUCCUGGCCGUCAUGUGCUUGCUCUUACAGUGCCUGGGCUCAGCCUACCAGCUGCUGCCAUACAGGAGAUUGUGGCCACUGUGACUCUCACCAGCAGUGCCUGGUUCCPCCCCCUUCCCUCAGGGGUAGACAAGGGACCUUUGAUUAUUUUUAGCUUUGUUUUUUUAUAAGCCUUUUUGGGGGUUAAAAUAGAGUUUCUUACAUUUUUGGGACUUUUUUAAUAGGCAUUUCCUCUUUUAUAUGAAGAAUUCCCAPCCAUUGGGCCCCUUCUAACCCCAGAAUGUGACCUCCUCCUCCAGUUACCCACAGCCCUGCCCUUUGCAGGGUUGGGGGUGGUCAGCGGUACCCCGGGGUUAGGCAU
Sequence (SHORT NAMES ENCODING) AGGGGCCAUUAGCCCUUUGGGUGGGCGGUGGAGCCCGGGAGCGCGCGGGCGAGACCAUGGCGGGUAGCAGCACUGGGGGCGGUGGGGUUGGGGAGACGAAGGUGAUUUACCACCUGGAUGAGGAAGAGACUCCCUACCUGGUGAAGAUCCCUGUCCCCGCCGAGCGCAUCACCCUCGGCGAUUUCAAGAGCGUCCUGCAGCGGCCCGCGGGCGCCAAGUACUUUUUCAAGUCUAUGGAUCAGGAUUUCGGGGUGGUGAAGGAAGAAAUUUCAGAUGACAACGCCCGCCUCCCCUGCUUCAACGGAAGGGUGGUAUCCUGGCUGGUGUCCUCAGAUAAUCCCCAACCCGAGAUGGCCCCUCCAGUCCAUGAGCCUCGGGCAGAACUGGCGCCUCCAGCCCCACCUUUACCUCCUUUGCCACCCGAGAGGACCAGCGGCAUUGGGGACUCAAGGCCUCCAYCCUUCCACCAUGAGAAUCUGGAGCCUGAGACAGAAACCGAGUCAGUAGUGUCACUGAGGCGGGAGCGGCCUCGCAGGAGAGACAGCAGUGAGCAUGGCGCUGGGGGCCACAGGACUGGUGGCCCCUCAAGGCUGGAGCGCCACCUGGCCGGAUACGAGAGCUCCUCUACCCUCAUGACCAGCGAGCUGGAGAGUACCAGCCUGGGGGACUCGGACGAGGAGGACACCAUGAGCAGGUUCAGCAGCUCCACGGAGCAGAGCAGUGCCUCCCGCCUCCUUAAGCGCCACCGGCGGCGAAGGAAGCAGAGGCCACCCCGCCUGGAGAGGACGUCAYCCUUCAGCAGCGUCACAGAUUCCACAAUGUCUCUCAAUAUCAUCACAGUCACGCUAAACAUGGAGAAGUACAACUUCCUGGGUAUCUCCAUUGUUGGCCAGAGCAAUGAGCGGGGAGACGGAGGCAUCUACAUUGGCUCCAUCAUGAAGGGUGGGGCUGUGGCGGCCGACGGGCGCAUUGAGCCAGGGGACAUGCUUUUGCAGGUGAAUGACAUGAACUUUGAGAACAUGAGCAACGAUGACGCUGUGCGGGUGCUGAGGGACAUUGUGCACAAGCCUGGCCCCAUUGUGCUGACUGUGGCCAAGUGCUGGGAUCCCUCUCCUCAGGCCUAUUUCACUCUCCCCCGAAAUGAGCCCAUCCAGCCAAUUGACCCUGCUGCCUGGGUGUCCCAUUCCGCGGCUCUGACUGGCACCUUCCCAGCCUAUCCAGGUUCCUCCUCCAUGAGCACCAUUACAUCUGGAUCGUCUUUGCCUGAUGGCUGUGAAGGCCGGGGUCUCUCCGUCCAUACGGACAUGGCAUCGGUGACCAAGGCCAUGGCAGCUCCAGAGUCUGGACUGGAAGUCCGGGACCGCAUGUGGCUCAAGAUCACCAUCCCUAAUGCCUUUCUGGGCUCGGAUGUGGUUGACUGGCUCUACCAUCACGUGGAGGGCUUUCCUGAGCGGCGGGAGGCCCGCAAGUAUGCCAGCGGGCUGCUCAAAGCAGGCCUGAUCCGACACACCGUCAACAAGAUCACCUUCUCUGAGCAGUGCUAUUACGUCUUCGGAGm6ACCUCAGUGGUGGCUGUGAGAGCUACCUAGUCAACCUGUCUCUCAAUGACAACGAUGGCUCCAGUGGGGCUUCAGACCAGGAUACCCUGGCUCCUCUGCCUGGGGCCACCCCCUGGCCCCUGCUGCCCACUUUCUCCUACCAAUACCCUGCCCCACACCCCUACAGCCCGCAGCCUCCACCCUACCAUGAGCUUUCAUCUUACACCUAUGGUGGGGGCAGUGCCAGCAGCCAGCAUAGUGAGGGCAGCCGGAGCAGUGGGUCGACACGGAGUGAUGGGGGGGCAGGGCGCACGGGGAGGCCCGAGGAGCGGGCCCCCGAGUCCAAGUCCGGCAGUGGCAGUGAGUCUGAGCCCYCCAGCCGAGGGGGCAGCCUUCGGCGGGGUGGGGAAGCAAGUGGGACUAGCGAUGGGGGCCCYCCUCCAYCCAGAGGCUCAACUGGGGGUGCCCCUAAUCUCCGAGCCCACCCAGGGCUCCAYCCCUAUGGACCGCCCCCUGGCAUGGCCCUCCCCUACAACCCCAUGAUGGUGGUCAUGAUGCCCCCACCYCCACCYCCAGUCCCUCCAGCAGUGCAGCCUCCGGGGGCCCCUCCAGUCAGAGACCUGGGCUCUGUGCCCCCAGAACUGACAGCCAGCCGCCAAAGCUUCCACAUGGCCAUGGGCAAUCCCAGCGAGUUCUUUGUGGAUGUUAUGUAGCCCACUGUGGGGCCAGGCUGGGCCGGGCGCUCCUGGUGUGUGACUGGGUGUCCUGGCCGUCAUGUGCUUGCUCUUACAGUGCCUGGGCUCAGCCUACCAGCUGCUGCCAUACAGGAGAUUGUGGCCACUGUGACUCUCACCAGCAGUGCCUGGUUCCYCCCCCUUCCCUCAGGGGUAGACAAGGGACCUUUGAUUAUUUUUAGCUUUGUUUUUUUAUAAGCCUUUUUGGGGGUUAAAAUAGAGUUUCUUACAUUUUUGGGACUUUUUUAAUAGGCAUUUCCUCUUUUAUAUGAAGAAUUCCCAYCCAUUGGGCCCCUUCUAACCCCAGAAUGUGACCUCCUCCUCCAGUUACCCACAGCCCUGCCCUUUGCAGGGUUGGGGGUGGUCAGCGGUACCCCGGGGUUAGGCAU
Sequence (MODOMICS CODE ENCODING) AGGGGCCAUUAGCCCUUUGGGUGGGCGGUGGAGCCCGGGAGCGCGCGGGCGAGACCAUGGCGGGUAGCAGCACUGGGGGCGGUGGGGUUGGGGAGACGAAGGUGAUUUACCACCUGGAUGAGGAAGAGACUCCCUACCUGGUGAAGAUCCCUGUCCCCGCCGAGCGCAUCACCCUCGGCGAUUUCAAGAGCGUCCUGCAGCGGCCCGCGGGCGCCAAGUACUUUUUCAAGUCUAUGGAUCAGGAUUUCGGGGUGGUGAAGGAAGAAAUUUCAGAUGACAACGCCCGCCUCCCCUGCUUCAACGGAAGGGUGGUAUCCUGGCUGGUGUCCUCAGAUAAUCCCCAACCCGAGAUGGCCCCUCCAGUCCAUGAGCCUCGGGCAGAACUGGCGCCUCCAGCCCCACCUUUACCUCCUUUGCCACCCGAGAGGACCAGCGGCAUUGGGGACUCAAGGCCUCCA2000000009UCCUUCCACCAUGAGAAUCUGGAGCCUGAGACAGAAACCGAGUCAGUAGUGUCACUGAGGCGGGAGCGGCCUCGCAGGAGAGACAGCAGUGAGCAUGGCGCUGGGGGCCACAGGACUGGUGGCCCCUCAAGGCUGGAGCGCCACCUGGCCGGAUACGAGAGCUCCUCUACCCUCAUGACCAGCGAGCUGGAGAGUACCAGCCUGGGGGACUCGGACGAGGAGGACACCAUGAGCAGGUUCAGCAGCUCCACGGAGCAGAGCAGUGCCUCCCGCCUCCUUAAGCGCCACCGGCGGCGAAGGAAGCAGAGGCCACCCCGCCUGGAGAGGACGUCA2000000009UCCUUCAGCAGCGUCACAGAUUCCACAAUGUCUCUCAAUAUCAUCACAGUCACGCUAAACAUGGAGAAGUACAACUUCCUGGGUAUCUCCAUUGUUGGCCAGAGCAAUGAGCGGGGAGACGGAGGCAUCUACAUUGGCUCCAUCAUGAAGGGUGGGGCUGUGGCGGCCGACGGGCGCAUUGAGCCAGGGGACAUGCUUUUGCAGGUGAAUGACAUGAACUUUGAGAACAUGAGCAACGAUGACGCUGUGCGGGUGCUGAGGGACAUUGUGCACAAGCCUGGCCCCAUUGUGCUGACUGUGGCCAAGUGCUGGGAUCCCUCUCCUCAGGCCUAUUUCACUCUCCCCCGAAAUGAGCCCAUCCAGCCAAUUGACCCUGCUGCCUGGGUGUCCCAUUCCGCGGCUCUGACUGGCACCUUCCCAGCCUAUCCAGGUUCCUCCUCCAUGAGCACCAUUACAUCUGGAUCGUCUUUGCCUGAUGGCUGUGAAGGCCGGGGUCUCUCCGUCCAUACGGACAUGGCAUCGGUGACCAAGGCCAUGGCAGCUCCAGAGUCUGGACUGGAAGUCCGGGACCGCAUGUGGCUCAAGAUCACCAUCCCUAAUGCCUUUCUGGGCUCGGAUGUGGUUGACUGGCUCUACCAUCACGUGGAGGGCUUUCCUGAGCGGCGGGAGGCCCGCAAGUAUGCCAGCGGGCUGCUCAAAGCAGGCCUGAUCCGACACACCGUCAACAAGAUCACCUUCUCUGAGCAGUGCUAUUACGUCUUCGGAG2000000006ACCUCAGUGGUGGCUGUGAGAGCUACCUAGUCAACCUGUCUCUCAAUGACAACGAUGGCUCCAGUGGGGCUUCAGACCAGGAUACCCUGGCUCCUCUGCCUGGGGCCACCCCCUGGCCCCUGCUGCCCACUUUCUCCUACCAAUACCCUGCCCCACACCCCUACAGCCCGCAGCCUCCACCCUACCAUGAGCUUUCAUCUUACACCUAUGGUGGGGGCAGUGCCAGCAGCCAGCAUAGUGAGGGCAGCCGGAGCAGUGGGUCGACACGGAGUGAUGGGGGGGCAGGGCGCACGGGGAGGCCCGAGGAGCGGGCCCCCGAGUCCAAGUCCGGCAGUGGCAGUGAGUCUGAGCCC2000000009UCCAGCCGAGGGGGCAGCCUUCGGCGGGGUGGGGAAGCAAGUGGGACUAGCGAUGGGGGCCC2000000009UCCUCCA2000000009UCCAGAGGCUCAACUGGGGGUGCCCCUAAUCUCCGAGCCCACCCAGGGCUCCA2000000009UCCCUAUGGACCGCCCCCUGGCAUGGCCCUCCCCUACAACCCCAUGAUGGUGGUCAUGAUGCCCCCACC2000000009UCCACC2000000009UCCAGUCCCUCCAGCAGUGCAGCCUCCGGGGGCCCCUCCAGUCAGAGACCUGGGCUCUGUGCCCCCAGAACUGACAGCCAGCCGCCAAAGCUUCCACAUGGCCAUGGGCAAUCCCAGCGAGUUCUUUGUGGAUGUUAUGUAGCCCACUGUGGGGCCAGGCUGGGCCGGGCGCUCCUGGUGUGUGACUGGGUGUCCUGGCCGUCAUGUGCUUGCUCUUACAGUGCCUGGGCUCAGCCUACCAGCUGCUGCCAUACAGGAGAUUGUGGCCACUGUGACUCUCACCAGCAGUGCCUGGUUCC2000000009UCCCCCUUCCCUCAGGGGUAGACAAGGGACCUUUGAUUAUUUUUAGCUUUGUUUUUUUAUAAGCCUUUUUGGGGGUUAAAAUAGAGUUUCUUACAUUUUUGGGACUUUUUUAAUAGGCAUUUCCUCUUUUAUAUGAAGAAUUCCCA2000000009UCCAUUGGGCCCCUUCUAACCCCAGAAUGUGACCUCCUCCUCCAGUUACCCACAGCCCUGCCCUUUGCAGGGUUGGGGGUGGUCAGCGGUACCCCGGGGUUAGGCAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 459 792 1558 1911 1973 1980 2033 2102 2108 2407 2553
Modification Positions Y Y m6A Y Y Y Y Y Y Y Y
Genomic Coordinates 17:7230292:- 17:7229441:- 17:7227113:- 17:7226203:- 17:7226141:- 17:7226134:- 17:7226081:- 17:7226012:- 17:7226006:- 17:7225707:- 17:7225561:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
8cMbzB4aD5Se
BtsJQJ3DteUq
bXBqJigD9oV3
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8