Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000604694
Gene ID: ENSG00000270647
Gene Name: TAF15
Sequence (UNICHARACTER ENCODING) ЖGUACAGCUCCGGCCGCCGCGCCGCCUGGCUUUCGUAUUCGUUGUUCUCGGCGGGCUGUGGGGCCUCCGCGCCGCGGCCGUUAGUCAUGUCGGAUUCUGGAAGUUACGGUCAGUCUGGGGGUGAGCAGCAAAGUUAUUCUACCUAUGGAAAUCCAGGCAGCCAAGGCUAUGGACAAGCAUCACAAAGCUAUUCUGGCUAUGGGCAAACGACUGAUUCCUCUUAUGGЖCAGAACUACAGCGGUUACUCCAGUUAUGGACAAAGUCAGUCAGGUUAUUCACAGUCCUAUGGUGGUUAUGAGAAUCAAAAGCAGAGCUCAUAUAGCCAGCAACCAUAUAAUAACCAGGGACAGCAGCAAAACAUGGAAUCAUCAGGAAGCCAAGGUGGAAGAGCACCUUCCUAUGACCAGCCAGACUAUGGUCAACAAGAUUCAUAUGACCAGCAGUCAGGCUAUGAUCAACAUCAAGGCUCAUAUGAUGAGCAGUCAAAUUAUGAUCAGCAGCAUGAUUCCUAUAGUCAAAACCAGCAGUCCUAUCAUUCACAAAGGGAAAACUACAGCCACCACACACAAGAUGACCGUCGUGAUGUGAGUAGGUAUGGAGAAGAUAAUAGAGGAUAUGGCGGGUCACAGGGAGGAGGUAGAGGGCGUGGGGGAUAUGACAAGGAUGGAAGAGGUCCUAUGACAGGAUCAAGGUCACAGGGAUUAUGGACCCAGAACAGAUGCUGAUUCAGAAUCUGAUAAUUCAGAUAACAACACAAUCUUUGUGCAAGGACUUGGGGAGGGUGUGUCUACAGAUCAAGUUGGGGAGUUCUPUAAЖCAAAUAGGAAUUAUCAAGACAAAUAAGAAGACCGGAAAACCAAUGAUAAAUCUPUAUACЖGACAAGGACACAGGAAAGCCAAAGGGGGAGGCAACAGUGUCAUUUGAUGACCCUCCUUCAGCUAAGGCAGCCAUUGACUGGUUUGAUGGAAAAGAAUUCCAUGGCAACAUCAUUAAAGUGUCCUUUGCCACUAGAAGACCUGAAUUCAUGAGAGGAGGUGGAAGUGGAGGUGGGCGGCGAGGCCGUGGAGGAUAUAGAGGUCGUGGAGGCUUUCAAGGGAGAGGUGGAGЖCCCCAAAAGUGGGGAUUGGGUUUGCCCUAAUCCGUCAUGCGGAAAUAUGAЖCUUUGCUCGAAGGAAUUCCUGCAAUCAGUGCAAUGAGCCUAGЖCCAGAGGACUCUCGUCCCUCAGGAGGAGAUUUCCGGGGGAGAGGCUACGGUGGAGAGAGGGGCUACAGAGGUCGUGGGGGCAGAGGUGGAGЖCCGAGGCGGCUAUGGUGGAGACAGAAGUGGGGGUGGCUAUGGUGGAGACAGAAGCAGCGGUGGUGGCUACAGCGGAGAUAGAAGUGGGGGCGGCUAUGGUGGAGACAGAAGUGGGGGUGGCUAUGGUGGGGACAGAGGCGGCGGCUAUGGUGGGGACAGAGGAGGCGGCUAUGGAGGAGЖCCGAGGAGGUGGCUAUGGAGGAGAUCGAGGUGGCUAUGGAGGAGЖCCGAGGUGGAGGCUAUGGUGGAGЖCCGAGGAGGCUAUGGAGGAGAUCGAGGAGGUUACGGAGGAGAUCGAGGAGGUUAUGGAGGAGAUCGAGGAGGCUAUGGAGGAGACAGAAGCCGGGGGGGCUAUGGAGGAGЖCCGUGGUGGUGGCAGUGGCUACGGUGGAGЖCCGAAGUGGAGGCUAUGGAGGAGACAGGAGUGGUGGCGGCUAUGGAGGAGЖCCGAGGUGGGGGCUACGGAGGAGЖCCGAGGUGGCUAUGGAGGCAAAAUGGGAGGAAGAAACGACUACAGAAAUGAUCAGCGCAACCGACCAUACUGAUGACUGUUUUGAAUGUUCCUUUGUCUCUGACAUGAUCCAUAGUGAAAUUGCCAGAGUUUUGCCUGCUGCUUUCCUCGUGGCCUCUUCUUGGGUAGUGAAAUUAAGUGACAUUUGGAUUUUUAUPUGGGUGGGAGGGCUGGGЖCAGUUUUUCUUCUAGAAAUGUCUGUUGAGAUUUCCCCCUPUAGUUUCCAACCUUCUCCCCAACCCUUGGAGCUAAAUGCGUUGUAAAAUAUUGCCA
Sequence (SHORT NAMES ENCODING) m6AGUACAGCUCCGGCCGCCGCGCCGCCUGGCUUUCGUAUUCGUUGUUCUCGGCGGGCUGUGGGGCCUCCGCGCCGCGGCCGUUAGUCAUGUCGGAUUCUGGAAGUUACGGUCAGUCUGGGGGUGAGCAGCAAAGUUAUUCUACCUAUGGAAAUCCAGGCAGCCAAGGCUAUGGACAAGCAUCACAAAGCUAUUCUGGCUAUGGGCAAACGACUGAUUCCUCUUAUGGm6ACAGAACUACAGCGGUUACUCCAGUUAUGGACAAAGUCAGUCAGGUUAUUCACAGUCCUAUGGUGGUUAUGAGAAUCAAAAGCAGAGCUCAUAUAGCCAGCAACCAUAUAAUAACCAGGGACAGCAGCAAAACAUGGAAUCAUCAGGAAGCCAAGGUGGAAGAGCACCUUCCUAUGACCAGCCAGACUAUGGUCAACAAGAUUCAUAUGACCAGCAGUCAGGCUAUGAUCAACAUCAAGGCUCAUAUGAUGAGCAGUCAAAUUAUGAUCAGCAGCAUGAUUCCUAUAGUCAAAACCAGCAGUCCUAUCAUUCACAAAGGGAAAACUACAGCCACCACACACAAGAUGACCGUCGUGAUGUGAGUAGGUAUGGAGAAGAUAAUAGAGGAUAUGGCGGGUCACAGGGAGGAGGUAGAGGGCGUGGGGGAUAUGACAAGGAUGGAAGAGGUCCUAUGACAGGAUCAAGGUCACAGGGAUUAUGGACCCAGAACAGAUGCUGAUUCAGAAUCUGAUAAUUCAGAUAACAACACAAUCUUUGUGCAAGGACUUGGGGAGGGUGUGUCUACAGAUCAAGUUGGGGAGUUCUYUAAm6ACAAAUAGGAAUUAUCAAGACAAAUAAGAAGACCGGAAAACCAAUGAUAAAUCUYUAUACm6AGACAAGGACACAGGAAAGCCAAAGGGGGAGGCAACAGUGUCAUUUGAUGACCCUCCUUCAGCUAAGGCAGCCAUUGACUGGUUUGAUGGAAAAGAAUUCCAUGGCAACAUCAUUAAAGUGUCCUUUGCCACUAGAAGACCUGAAUUCAUGAGAGGAGGUGGAAGUGGAGGUGGGCGGCGAGGCCGUGGAGGAUAUAGAGGUCGUGGAGGCUUUCAAGGGAGAGGUGGAGm6ACCCCAAAAGUGGGGAUUGGGUUUGCCCUAAUCCGUCAUGCGGAAAUAUGAm6ACUUUGCUCGAAGGAAUUCCUGCAAUCAGUGCAAUGAGCCUAGm6ACCAGAGGACUCUCGUCCCUCAGGAGGAGAUUUCCGGGGGAGAGGCUACGGUGGAGAGAGGGGCUACAGAGGUCGUGGGGGCAGAGGUGGAGm6ACCGAGGCGGCUAUGGUGGAGACAGAAGUGGGGGUGGCUAUGGUGGAGACAGAAGCAGCGGUGGUGGCUACAGCGGAGAUAGAAGUGGGGGCGGCUAUGGUGGAGACAGAAGUGGGGGUGGCUAUGGUGGGGACAGAGGCGGCGGCUAUGGUGGGGACAGAGGAGGCGGCUAUGGAGGAGm6ACCGAGGAGGUGGCUAUGGAGGAGAUCGAGGUGGCUAUGGAGGAGm6ACCGAGGUGGAGGCUAUGGUGGAGm6ACCGAGGAGGCUAUGGAGGAGAUCGAGGAGGUUACGGAGGAGAUCGAGGAGGUUAUGGAGGAGAUCGAGGAGGCUAUGGAGGAGACAGAAGCCGGGGGGGCUAUGGAGGAGm6ACCGUGGUGGUGGCAGUGGCUACGGUGGAGm6ACCGAAGUGGAGGCUAUGGAGGAGACAGGAGUGGUGGCGGCUAUGGAGGAGm6ACCGAGGUGGGGGCUACGGAGGAGm6ACCGAGGUGGCUAUGGAGGCAAAAUGGGAGGAAGAAACGACUACAGAAAUGAUCAGCGCAACCGACCAUACUGAUGACUGUUUUGAAUGUUCCUUUGUCUCUGACAUGAUCCAUAGUGAAAUUGCCAGAGUUUUGCCUGCUGCUUUCCUCGUGGCCUCUUCUUGGGUAGUGAAAUUAAGUGACAUUUGGAUUUUUAUYUGGGUGGGAGGGCUGGGm6ACAGUUUUUCUUCUAGAAAUGUCUGUUGAGAUUUCCCCCUYUAGUUUCCAACCUUCUCCCCAACCCUUGGAGCUAAAUGCGUUGUAAAAUAUUGCCA
Sequence (MODOMICS CODE ENCODING) 2000000006AGUACAGCUCCGGCCGCCGCGCCGCCUGGCUUUCGUAUUCGUUGUUCUCGGCGGGCUGUGGGGCCUCCGCGCCGCGGCCGUUAGUCAUGUCGGAUUCUGGAAGUUACGGUCAGUCUGGGGGUGAGCAGCAAAGUUAUUCUACCUAUGGAAAUCCAGGCAGCCAAGGCUAUGGACAAGCAUCACAAAGCUAUUCUGGCUAUGGGCAAACGACUGAUUCCUCUUAUGG2000000006ACAGAACUACAGCGGUUACUCCAGUUAUGGACAAAGUCAGUCAGGUUAUUCACAGUCCUAUGGUGGUUAUGAGAAUCAAAAGCAGAGCUCAUAUAGCCAGCAACCAUAUAAUAACCAGGGACAGCAGCAAAACAUGGAAUCAUCAGGAAGCCAAGGUGGAAGAGCACCUUCCUAUGACCAGCCAGACUAUGGUCAACAAGAUUCAUAUGACCAGCAGUCAGGCUAUGAUCAACAUCAAGGCUCAUAUGAUGAGCAGUCAAAUUAUGAUCAGCAGCAUGAUUCCUAUAGUCAAAACCAGCAGUCCUAUCAUUCACAAAGGGAAAACUACAGCCACCACACACAAGAUGACCGUCGUGAUGUGAGUAGGUAUGGAGAAGAUAAUAGAGGAUAUGGCGGGUCACAGGGAGGAGGUAGAGGGCGUGGGGGAUAUGACAAGGAUGGAAGAGGUCCUAUGACAGGAUCAAGGUCACAGGGAUUAUGGACCCAGAACAGAUGCUGAUUCAGAAUCUGAUAAUUCAGAUAACAACACAAUCUUUGUGCAAGGACUUGGGGAGGGUGUGUCUACAGAUCAAGUUGGGGAGUUCU2000000009UUAA2000000006ACAAAUAGGAAUUAUCAAGACAAAUAAGAAGACCGGAAAACCAAUGAUAAAUCU2000000009UUAUAC2000000006AGACAAGGACACAGGAAAGCCAAAGGGGGAGGCAACAGUGUCAUUUGAUGACCCUCCUUCAGCUAAGGCAGCCAUUGACUGGUUUGAUGGAAAAGAAUUCCAUGGCAACAUCAUUAAAGUGUCCUUUGCCACUAGAAGACCUGAAUUCAUGAGAGGAGGUGGAAGUGGAGGUGGGCGGCGAGGCCGUGGAGGAUAUAGAGGUCGUGGAGGCUUUCAAGGGAGAGGUGGAG2000000006ACCCCAAAAGUGGGGAUUGGGUUUGCCCUAAUCCGUCAUGCGGAAAUAUGA2000000006ACUUUGCUCGAAGGAAUUCCUGCAAUCAGUGCAAUGAGCCUAG2000000006ACCAGAGGACUCUCGUCCCUCAGGAGGAGAUUUCCGGGGGAGAGGCUACGGUGGAGAGAGGGGCUACAGAGGUCGUGGGGGCAGAGGUGGAG2000000006ACCGAGGCGGCUAUGGUGGAGACAGAAGUGGGGGUGGCUAUGGUGGAGACAGAAGCAGCGGUGGUGGCUACAGCGGAGAUAGAAGUGGGGGCGGCUAUGGUGGAGACAGAAGUGGGGGUGGCUAUGGUGGGGACAGAGGCGGCGGCUAUGGUGGGGACAGAGGAGGCGGCUAUGGAGGAG2000000006ACCGAGGAGGUGGCUAUGGAGGAGAUCGAGGUGGCUAUGGAGGAG2000000006ACCGAGGUGGAGGCUAUGGUGGAG2000000006ACCGAGGAGGCUAUGGAGGAGAUCGAGGAGGUUACGGAGGAGAUCGAGGAGGUUAUGGAGGAGAUCGAGGAGGCUAUGGAGGAGACAGAAGCCGGGGGGGCUAUGGAGGAG2000000006ACCGUGGUGGUGGCAGUGGCUACGGUGGAG2000000006ACCGAAGUGGAGGCUAUGGAGGAGACAGGAGUGGUGGCGGCUAUGGAGGAG2000000006ACCGAGGUGGGGGCUACGGAGGAG2000000006ACCGAGGUGGCUAUGGAGGCAAAAUGGGAGGAAGAAACGACUACAGAAAUGAUCAGCGCAACCGACCAUACUGAUGACUGUUUUGAAUGUUCCUUUGUCUCUGACAUGAUCCAUAGUGAAAUUGCCAGAGUUUUGCCUGCUGCUUUCCUCGUGGCCUCUUCUUGGGUAGUGAAAUUAAGUGACAUUUGGAUUUUUAU2000000009UUGGGUGGGAGGGCUGGG2000000006ACAGUUUUUCUUCUAGAAAUGUCUGUUGAGAUUUCCCCCU2000000009UUAGUUUCCAACCUUCUCCCCAACCCUUGGAGCUAAAUGCGUUGUAAAAUAUUGCCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1 227 812 816 870 876 1106 1157 1200 1292 1472 1517 1541 1652 1682 1733 1757 1954 1972 2012
Modification Positions m6A m6A Y m6A Y m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A Y m6A Y
Genomic Coordinates 17:35809484:+ 17:35820205:+ 17:35836219:+ 17:35836223:+ 17:35838459:+ 17:35838465:+ 17:35844125:+ 17:35844297:+ 17:35844340:+ 17:35844540:+ 17:35844720:+ 17:35844765:+ 17:35844789:+ 17:35844900:+ 17:35844930:+ 17:35844981:+ 17:35845005:+ 17:35847069:+ 17:35847087:+ 17:35847127:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
4HMi5ykupT9V
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
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KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
bXBqJigD9oV3
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Yfn77uLS5tv8
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f6YSioLdAWpr
Yfn77uLS5tv8
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3kRDPWwiRCgi
L6w2k2VEv4EY
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dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
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8cMbzB4aD5Se
ArijeGVTwYBw
bXBqJigD9oV3
dknfVe6BK8aP
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S9vNeQQYrhac
Yfn77uLS5tv8
ArijeGVTwYBw
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Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
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VyCX26p5UBRL
bXBqJigD9oV3
dknfVe6BK8aP
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bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
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Mk6ShCGm6RBJ
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
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S9vNeQQYrhac
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BtsJQJ3DteUq
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CxQaH6qDB9bC
dknfVe6BK8aP
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Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
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iezFbUdmY3A6
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CxQaH6qDB9bC
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a7o5Kmjr4Tdp
Yfn77uLS5tv8
BsCW7emuRX7M
Lny8GcCeVGc9
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BtsJQJ3DteUq
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CxQaH6qDB9bC
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kx7BHU7ZycYE
Mk6ShCGm6RBJ
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a7o5Kmjr4Tdp
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BtsJQJ3DteUq
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CxQaH6qDB9bC
dknfVe6BK8aP
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kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8