Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000324238
Gene ID: ENSG00000176390
Gene Name: CRLF3
Sequence (UNICHARACTER ENCODING) AGUCGGGAACCCGCGCUAGGUUUCGCCGGCCGCGCGGCCAGAUGAGGGGGGCGAUGGAGCUGGAGCCUGAGCUGCUGUUGCAGGAGGCCCGCGAGAACGUGGAGGCAGCGCAGAGCUACCGGCGGGAGCUGGGUCACCGGCUUGAGGGGCUGCGUGAGGCGCGGAGGCAGAUCAAAGAAAGUGCAUCACAGACAAGGGAUGUUCUCAAACAGCAUUUUAAUGAUUUAAAGGGAACCCUUGGAAAGCUCCUGGAUGAGCGAUUGGUGACCCUUUUGCAAGAGGUGGACACCAUUGAACAGGAGACCAUUAAACCACUAGAUGACUGCCAGAAGCUCAUAGAACACGGAGUCAACACUGCAGAGGACUUAGUCCGAGAAGGUGAAAUCGCCAUGCUUGGUGGUGUGGGAGAAGAGAAUGAGAAACUGUGGAGCUUUACCAAAAAGGCCUCGCACAUUCAGUUGGACAGCUUACCAGAAGUACCUUUACUGGUUGAUGUGCCUUGUUUAUCUGCUCAGUUGGAUGACUCAAUUCUUAACAUAGUGAAAGACCACAUUUUUAAGCAUGGAACAGUAGCAUCUCGCCCACCAGUACAGAUAGAAGAACUAAUAGAGAAACCUGGAGGCAUCAUUGUACGAUGGUGUAAGGUGGAUGAUGACUUUACAGCCCAAGAUUACAGGCUCCAGUUUCGUAAAUGUACUUCAAAUCAUUUUGAGGAUGUAUAUGUAGGUUCUGAAACUGAAUUCAUAGUAUUGCACAUAGACCCCAACGUUGAUUACCAGUUCAGAGUCUGCGCCCGAGGAGAUGGCCGACAGGAGUGGAGUCCUUGGAGUGUCCCCCAGAUAGGUCAUUCCACAUUGGUGCCUCAUGAGUGGACAGCUGGUUUUGAGGGGUACAGUCUGAGCAGUCGAAGAAAUAUAGCACUUCGGAACGAUUCUGAAUCAUCGGGUGUUCUCUACUCCAGAGCUCCGACUUAUUUCUGUGGGCAGACAUUAACAUUCAGAGUUGAAACUGUGGGACAGCCAGACAGAAGAGAUAGCAUAGGAGUGUGUGCAGAAAAACAGGAUGGAUAUGACUCUCUGCAGCGGGAUCAAGCUGUGUGCAUUAGUACAAAUGGUGCAGUUUUUGUCAAUGGAAAAGAAAUGACAAAUCAGUUACCCGCAGUUACUUCUGGGUCCACUGUCACGUUUGACAUUGAAGCCGUGACUCUAGGAACCACCAGUAAUAAUGAAGGUGGACACUUCAAGCUUCGAGUAACUAUAAGUUCAAAUAAUAGAGAAGUGGUUUUUGACUGGUUACUUGAUCAGUCUUGUGGUUCUCUUUACUUUGGAUGCUCAUUUUUCUAUCCUGGAUGGAAAGUGUUAGUGUUUUAGAUGUUUGGGUGCUUGGCUUUGGUUUUCAGGGUCUAACGUAGCUGUCCUCAGCCCAGCGUAGUUGUAAUUGCUUUAAAAAAAAAGUUGAAUUCAUCUCUAACUUAGGCCAUUGGAAAGUGUUUACUGGAUUCAUUUUGUAAUAUUUUAGCAAAAAGAGACUUCAAUGUUGUGGACAAAAUCAUACAAUUCAGUCAAUUUUAUUUUUAGCAUACUGUUAAAUAUCACAUCACAAUAAAAAUCAAAUUGGCAUUAAAAGUAUAGAAGAUAUAGGAAGUUCUAUACCCUUCCACUGUACUUCUCAAAGUUGGUUAUUAGACCAGGAAAACUUAAUGUAAUAUUAUUUUUAAAAUCAUCUUAAAGGAUCCAAGUCCAUGUAACUCUUUAGAACAAGAGGAAUAGGUCAGAUAGAAGAAGCUGUGUAAUGUAUUAAUACAUCCGUUCAUGUGCUGUCCACAUGAAUGUGUUGACUGUGCUCUCCAUGUUCAGGUAUUUGUAAGCAGUGUUGACUUUUAUCCCCUCUUCAGUAAUCUUUAAGUCCCCAAAACAUUAUAACUUUUUCUUUUUUUGUUGAGACGGAGUCUCACUCUUGUCACUCAGGCUGGAGUGCAGUGGUGUGAUCUCAGUUCACUGCAACCUCUGCCUCCCACGUUCAAGCGAUCCUCCUGCCUCAGGCUCCUGAGUAGCUGGGAUUACAGGCGUCGGCCACCACACCUGGCUAAUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACCAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGUUCCACCCACCUCAGCCUUCCAAAGUGCUAGGAUUACAGGUGUGAGCCACUGCAGUGGACCAAUUUUUGUAUUUUUUUAAAUGCUUGACCAAGUGUCUAAAAUAGGCAAGUAGUACCUUUUGUUCUUUCAUUGCAAUUUGAUACAGUAUAGGCUACAGUAUUUUUACAGGGUAAAACUAGUUAUGGCAGUAGUAUGCACAGCAGUGUUAGCCAUUUCAUAUGUAUGUAAUAUGCACGUGUGUAUCCAAUCUGCCUGUGACAUGCAUUUUACUCUUUGCAGAGAAUGAGCUGCAGUCCAGUUUAAUGUCAGUUUAAUAAGUGGUCUCUUUUUAGCAGAGCAAAAAAAUAUAGCGUAAAUACUUAUUUUUUUUAAAAЖCUUACUUAAAUUUGUGUGUAAAAUAUUUAUUUGAAGGACUPUAAUAUGUAAAAAUAAUUGUCUUCUAUGCCACCCUACAGAUUUUAUUUUAAUGUGAAUUAUUUUUUUCAUUUCAUUUUUACCAGUAUAGUAAAAAAGUAGAAAAGCAAGUAUGAUAUUUUUGUAAGAUAAUUUAUUUGGGGAUUCAUGUUCCCUGUUAGACAAUCAUGACCUUUUCUACUUGUCUUUUUAUAUAUAAGUAGUAGAUUUCCACUUGUUUAGGGAUUAAGAAGAUGUUCUAGAAUGUAGAUACCUUGUCCAGCCAUAGGAAUCAAAAUAAAAAACUAAAAAAGUUCA
Sequence (SHORT NAMES ENCODING) AGUCGGGAACCCGCGCUAGGUUUCGCCGGCCGCGCGGCCAGAUGAGGGGGGCGAUGGAGCUGGAGCCUGAGCUGCUGUUGCAGGAGGCCCGCGAGAACGUGGAGGCAGCGCAGAGCUACCGGCGGGAGCUGGGUCACCGGCUUGAGGGGCUGCGUGAGGCGCGGAGGCAGAUCAAAGAAAGUGCAUCACAGACAAGGGAUGUUCUCAAACAGCAUUUUAAUGAUUUAAAGGGAACCCUUGGAAAGCUCCUGGAUGAGCGAUUGGUGACCCUUUUGCAAGAGGUGGACACCAUUGAACAGGAGACCAUUAAACCACUAGAUGACUGCCAGAAGCUCAUAGAACACGGAGUCAACACUGCAGAGGACUUAGUCCGAGAAGGUGAAAUCGCCAUGCUUGGUGGUGUGGGAGAAGAGAAUGAGAAACUGUGGAGCUUUACCAAAAAGGCCUCGCACAUUCAGUUGGACAGCUUACCAGAAGUACCUUUACUGGUUGAUGUGCCUUGUUUAUCUGCUCAGUUGGAUGACUCAAUUCUUAACAUAGUGAAAGACCACAUUUUUAAGCAUGGAACAGUAGCAUCUCGCCCACCAGUACAGAUAGAAGAACUAAUAGAGAAACCUGGAGGCAUCAUUGUACGAUGGUGUAAGGUGGAUGAUGACUUUACAGCCCAAGAUUACAGGCUCCAGUUUCGUAAAUGUACUUCAAAUCAUUUUGAGGAUGUAUAUGUAGGUUCUGAAACUGAAUUCAUAGUAUUGCACAUAGACCCCAACGUUGAUUACCAGUUCAGAGUCUGCGCCCGAGGAGAUGGCCGACAGGAGUGGAGUCCUUGGAGUGUCCCCCAGAUAGGUCAUUCCACAUUGGUGCCUCAUGAGUGGACAGCUGGUUUUGAGGGGUACAGUCUGAGCAGUCGAAGAAAUAUAGCACUUCGGAACGAUUCUGAAUCAUCGGGUGUUCUCUACUCCAGAGCUCCGACUUAUUUCUGUGGGCAGACAUUAACAUUCAGAGUUGAAACUGUGGGACAGCCAGACAGAAGAGAUAGCAUAGGAGUGUGUGCAGAAAAACAGGAUGGAUAUGACUCUCUGCAGCGGGAUCAAGCUGUGUGCAUUAGUACAAAUGGUGCAGUUUUUGUCAAUGGAAAAGAAAUGACAAAUCAGUUACCCGCAGUUACUUCUGGGUCCACUGUCACGUUUGACAUUGAAGCCGUGACUCUAGGAACCACCAGUAAUAAUGAAGGUGGACACUUCAAGCUUCGAGUAACUAUAAGUUCAAAUAAUAGAGAAGUGGUUUUUGACUGGUUACUUGAUCAGUCUUGUGGUUCUCUUUACUUUGGAUGCUCAUUUUUCUAUCCUGGAUGGAAAGUGUUAGUGUUUUAGAUGUUUGGGUGCUUGGCUUUGGUUUUCAGGGUCUAACGUAGCUGUCCUCAGCCCAGCGUAGUUGUAAUUGCUUUAAAAAAAAAGUUGAAUUCAUCUCUAACUUAGGCCAUUGGAAAGUGUUUACUGGAUUCAUUUUGUAAUAUUUUAGCAAAAAGAGACUUCAAUGUUGUGGACAAAAUCAUACAAUUCAGUCAAUUUUAUUUUUAGCAUACUGUUAAAUAUCACAUCACAAUAAAAAUCAAAUUGGCAUUAAAAGUAUAGAAGAUAUAGGAAGUUCUAUACCCUUCCACUGUACUUCUCAAAGUUGGUUAUUAGACCAGGAAAACUUAAUGUAAUAUUAUUUUUAAAAUCAUCUUAAAGGAUCCAAGUCCAUGUAACUCUUUAGAACAAGAGGAAUAGGUCAGAUAGAAGAAGCUGUGUAAUGUAUUAAUACAUCCGUUCAUGUGCUGUCCACAUGAAUGUGUUGACUGUGCUCUCCAUGUUCAGGUAUUUGUAAGCAGUGUUGACUUUUAUCCCCUCUUCAGUAAUCUUUAAGUCCCCAAAACAUUAUAACUUUUUCUUUUUUUGUUGAGACGGAGUCUCACUCUUGUCACUCAGGCUGGAGUGCAGUGGUGUGAUCUCAGUUCACUGCAACCUCUGCCUCCCACGUUCAAGCGAUCCUCCUGCCUCAGGCUCCUGAGUAGCUGGGAUUACAGGCGUCGGCCACCACACCUGGCUAAUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACCAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGUUCCACCCACCUCAGCCUUCCAAAGUGCUAGGAUUACAGGUGUGAGCCACUGCAGUGGACCAAUUUUUGUAUUUUUUUAAAUGCUUGACCAAGUGUCUAAAAUAGGCAAGUAGUACCUUUUGUUCUUUCAUUGCAAUUUGAUACAGUAUAGGCUACAGUAUUUUUACAGGGUAAAACUAGUUAUGGCAGUAGUAUGCACAGCAGUGUUAGCCAUUUCAUAUGUAUGUAAUAUGCACGUGUGUAUCCAAUCUGCCUGUGACAUGCAUUUUACUCUUUGCAGAGAAUGAGCUGCAGUCCAGUUUAAUGUCAGUUUAAUAAGUGGUCUCUUUUUAGCAGAGCAAAAAAAUAUAGCGUAAAUACUUAUUUUUUUUAAAAm6ACUUACUUAAAUUUGUGUGUAAAAUAUUUAUUUGAAGGACUYUAAUAUGUAAAAAUAAUUGUCUUCUAUGCCACCCUACAGAUUUUAUUUUAAUGUGAAUUAUUUUUUUCAUUUCAUUUUUACCAGUAUAGUAAAAAAGUAGAAAAGCAAGUAUGAUAUUUUUGUAAGAUAAUUUAUUUGGGGAUUCAUGUUCCCUGUUAGACAAUCAUGACCUUUUCUACUUGUCUUUUUAUAUAUAAGUAGUAGAUUUCCACUUGUUUAGGGAUUAAGAAGAUGUUCUAGAAUGUAGAUACCUUGUCCAGCCAUAGGAAUCAAAAUAAAAAACUAAAAAAGUUCA
Sequence (MODOMICS CODE ENCODING) AGUCGGGAACCCGCGCUAGGUUUCGCCGGCCGCGCGGCCAGAUGAGGGGGGCGAUGGAGCUGGAGCCUGAGCUGCUGUUGCAGGAGGCCCGCGAGAACGUGGAGGCAGCGCAGAGCUACCGGCGGGAGCUGGGUCACCGGCUUGAGGGGCUGCGUGAGGCGCGGAGGCAGAUCAAAGAAAGUGCAUCACAGACAAGGGAUGUUCUCAAACAGCAUUUUAAUGAUUUAAAGGGAACCCUUGGAAAGCUCCUGGAUGAGCGAUUGGUGACCCUUUUGCAAGAGGUGGACACCAUUGAACAGGAGACCAUUAAACCACUAGAUGACUGCCAGAAGCUCAUAGAACACGGAGUCAACACUGCAGAGGACUUAGUCCGAGAAGGUGAAAUCGCCAUGCUUGGUGGUGUGGGAGAAGAGAAUGAGAAACUGUGGAGCUUUACCAAAAAGGCCUCGCACAUUCAGUUGGACAGCUUACCAGAAGUACCUUUACUGGUUGAUGUGCCUUGUUUAUCUGCUCAGUUGGAUGACUCAAUUCUUAACAUAGUGAAAGACCACAUUUUUAAGCAUGGAACAGUAGCAUCUCGCCCACCAGUACAGAUAGAAGAACUAAUAGAGAAACCUGGAGGCAUCAUUGUACGAUGGUGUAAGGUGGAUGAUGACUUUACAGCCCAAGAUUACAGGCUCCAGUUUCGUAAAUGUACUUCAAAUCAUUUUGAGGAUGUAUAUGUAGGUUCUGAAACUGAAUUCAUAGUAUUGCACAUAGACCCCAACGUUGAUUACCAGUUCAGAGUCUGCGCCCGAGGAGAUGGCCGACAGGAGUGGAGUCCUUGGAGUGUCCCCCAGAUAGGUCAUUCCACAUUGGUGCCUCAUGAGUGGACAGCUGGUUUUGAGGGGUACAGUCUGAGCAGUCGAAGAAAUAUAGCACUUCGGAACGAUUCUGAAUCAUCGGGUGUUCUCUACUCCAGAGCUCCGACUUAUUUCUGUGGGCAGACAUUAACAUUCAGAGUUGAAACUGUGGGACAGCCAGACAGAAGAGAUAGCAUAGGAGUGUGUGCAGAAAAACAGGAUGGAUAUGACUCUCUGCAGCGGGAUCAAGCUGUGUGCAUUAGUACAAAUGGUGCAGUUUUUGUCAAUGGAAAAGAAAUGACAAAUCAGUUACCCGCAGUUACUUCUGGGUCCACUGUCACGUUUGACAUUGAAGCCGUGACUCUAGGAACCACCAGUAAUAAUGAAGGUGGACACUUCAAGCUUCGAGUAACUAUAAGUUCAAAUAAUAGAGAAGUGGUUUUUGACUGGUUACUUGAUCAGUCUUGUGGUUCUCUUUACUUUGGAUGCUCAUUUUUCUAUCCUGGAUGGAAAGUGUUAGUGUUUUAGAUGUUUGGGUGCUUGGCUUUGGUUUUCAGGGUCUAACGUAGCUGUCCUCAGCCCAGCGUAGUUGUAAUUGCUUUAAAAAAAAAGUUGAAUUCAUCUCUAACUUAGGCCAUUGGAAAGUGUUUACUGGAUUCAUUUUGUAAUAUUUUAGCAAAAAGAGACUUCAAUGUUGUGGACAAAAUCAUACAAUUCAGUCAAUUUUAUUUUUAGCAUACUGUUAAAUAUCACAUCACAAUAAAAAUCAAAUUGGCAUUAAAAGUAUAGAAGAUAUAGGAAGUUCUAUACCCUUCCACUGUACUUCUCAAAGUUGGUUAUUAGACCAGGAAAACUUAAUGUAAUAUUAUUUUUAAAAUCAUCUUAAAGGAUCCAAGUCCAUGUAACUCUUUAGAACAAGAGGAAUAGGUCAGAUAGAAGAAGCUGUGUAAUGUAUUAAUACAUCCGUUCAUGUGCUGUCCACAUGAAUGUGUUGACUGUGCUCUCCAUGUUCAGGUAUUUGUAAGCAGUGUUGACUUUUAUCCCCUCUUCAGUAAUCUUUAAGUCCCCAAAACAUUAUAACUUUUUCUUUUUUUGUUGAGACGGAGUCUCACUCUUGUCACUCAGGCUGGAGUGCAGUGGUGUGAUCUCAGUUCACUGCAACCUCUGCCUCCCACGUUCAAGCGAUCCUCCUGCCUCAGGCUCCUGAGUAGCUGGGAUUACAGGCGUCGGCCACCACACCUGGCUAAUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACCAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGUUCCACCCACCUCAGCCUUCCAAAGUGCUAGGAUUACAGGUGUGAGCCACUGCAGUGGACCAAUUUUUGUAUUUUUUUAAAUGCUUGACCAAGUGUCUAAAAUAGGCAAGUAGUACCUUUUGUUCUUUCAUUGCAAUUUGAUACAGUAUAGGCUACAGUAUUUUUACAGGGUAAAACUAGUUAUGGCAGUAGUAUGCACAGCAGUGUUAGCCAUUUCAUAUGUAUGUAAUAUGCACGUGUGUAUCCAAUCUGCCUGUGACAUGCAUUUUACUCUUUGCAGAGAAUGAGCUGCAGUCCAGUUUAAUGUCAGUUUAAUAAGUGGUCUCUUUUUAGCAGAGCAAAAAAAUAUAGCGUAAAUACUUAUUUUUUUUAAAA2000000006ACUUACUUAAAUUUGUGUGUAAAAUAUUUAUUUGAAGGACU2000000009UUAAUAUGUAAAAAUAAUUGUCUUCUAUGCCACCCUACAGAUUUUAUUUUAAUGUGAAUUAUUUUUUUCAUUUCAUUUUUACCAGUAUAGUAAAAAAGUAGAAAAGCAAGUAUGAUAUUUUUGUAAGAUAAUUUAUUUGGGGAUUCAUGUUCCCUGUUAGACAAUCAUGACCUUUUCUACUUGUCUUUUUAUAUAUAAGUAGUAGAUUUCCACUUGUUUAGGGAUUAAGAAGAUGUUCUAGAAUGUAGAUACCUUGUCCAGCCAUAGGAAUCAAAAUAAAAAACUAAAAAAGUUCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 2537 2578
Modification Positions m6A Y
Genomic Coordinates 17:30783020:- 17:30782979:-
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
a7o5Kmjr4Tdp
BtsJQJ3DteUq
dknfVe6BK8aP
a7o5Kmjr4Tdp