Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000582106
Gene ID: ENSG00000265688
Gene Name: MILIP
Sequence (UNICHARACTER ENCODING) AUGCGCAACCCGCGCGCCGUCGUCCCUGGCAACACUGGCUGCUCUAGCGCCUGGCGGGGUCUCACGGGCGGGCCUGGGCGCACGGCCAAAGCGCCAGGUCUCCACCCCCAGCCCCCGGCGUCCUGCAGCCGGAGCCUGCCUCGCCUGGCUCCUGCGCCCGCCGUCCAGGGCCCCUGUCCAAGCUCGCGGACGCCGGCGGCGUUUUCCAGCUCGAGUGCUCAGCCUAGGGCAGGCUCUGCGUGCGCCCCCUCGAGUGCCGGCCUGGGCCCUGCCAGGCAGAGGCGCUCUUGCGUCAGGACGGCGCCGCCGGGGCCCCGCGAUUCCAACUCGGGGGUCCCGGAGCGGCGCGGGGCGGGGACGGCCUGGCAGCUCCCAGCAGCGAGGGGCGAUCCCCGCCCGCGCAGCAGACCCCGAGCUGCCCAGGCCCUUCCUGCGCCACGUGUACCCAGAGCUCCGCCCGGGGGAGACUUCGCUGCUUGUUGGAGAUGCCCAGCGGUAGGGGGCGAGGACUCGGGAGGAAGAUAAACGGGGGAUCCCGUGUCUGGЖCUUUCUCCUCCACCCUCUUCCCUUCGCAGCUGUGAAUCCUGGGAGGGGAAGGGUGGCCGCCCCGCCAGCAGAGAGCUGAAGGUGUUCCGUGGUCAGUGAGGGCUGGCACUGGCUCUGCACGAAGAUCUCCUCACCUCCCCAGCGGCUCCUGGCCAGCUCCCCACGGAGAGCCCAGGЖCACUUGUCCCUGGЖCACAGUGGUGCAGCCAUGCUUGGGCCAAACCAUGAGGCCACCAGAACCGCGAAAGGCUACUGUACUGAGAGGGAUACUGCGAGAGAGGCCCACAGGUUUCCAAGCAUCCCUCUCACUCCGCACACUCAUCUCCACGACCGGCUUUAAGUGCGGCCUUGAGGCCUGGCUCCCUGUUUGGЖCUUCUCUGCACCUCCAGGAGCUCACUUCCCGUCACAGCUGGAUGCCUCCUCCCGCAGGCACCUCCCGGGCAUCCUCCCGCCCCAGGCUGCACCUUCUGUGGGЖCUGGCCCCCGCAGGCACCUCCCGGGCACCCUCCCGCCCCAGGCUGCAGCUUCUGUGGGЖCUGAGCCCCGCAGGCACCUCCCCGGCAUCCUCCCGCCCCAGGCUGCACCUUCUGUGGGЖCUGAGCCCCGCAGGCACUUCCCCGGCAUCCUCCCGCCCCAGGCUGCAGCUUCUGUGGGЖCUGACCUUAAGACCCCAUCGGUUCCUCCUGAGAGCAGCAGAUCUCAGCCAGAUGCUGCCGGGAGGGAGGUGCUAGCGUCCACACCCAGACGGGUCCAGUCCAGCCCUGCUCUCCCUGGUCUCCAGGCAGGGCCCUCCCAGGGUGGЖCAUUGCCCAUCUCUGCCUGGCCAGGGGCUGCUGACCCACUGGUUCCAGAGUCUGAGCCUGUCCUGCACAAGUACCAUGGЖCAGGGGUCAGCCGGGCACUGAAGAGGCGUGGCAGAAUUGGGCAGGGCAAGGGCCCCAGCUGGCAAGCUGGAGUCAGGGCAAUUCCAACCAAGAAЖCUGCGGCAGGCCGGGUGCAGUGUCUCAAGCCUAUAAUCCCAGCЖCUUUGGGAGGCAGUGGGAGAAUCGCUUGAGCCCGGGAGUUUGAGACCAGCAUUGGUAACAUAGAGЖCCCUAUCGCUACAAGAAAAAAAAAAAAAAAAAGCUGGGCAUGGUGGUGCACACCUGUUGUCCCAGCUAUUCAGGAGGCUGACGUGGGAGGAUUGCUUGUGCCCAGGGGUUGCAGGCUGCAGUGAGCUGUGAUCAUACCACUGCACUCCAGCCUGGGCGACAGAGAACCUCUCUAAAAAAAAAGGAAAAUGAAAAAUAAAUGGGGGCAGAAGCUGAGCCAAGCAGAGGCGGGCAGCUCCUCCUCCAGGGCCCACCUGGCCUGCUGGGGA
Sequence (SHORT NAMES ENCODING) AUGCGCAACCCGCGCGCCGUCGUCCCUGGCAACACUGGCUGCUCUAGCGCCUGGCGGGGUCUCACGGGCGGGCCUGGGCGCACGGCCAAAGCGCCAGGUCUCCACCCCCAGCCCCCGGCGUCCUGCAGCCGGAGCCUGCCUCGCCUGGCUCCUGCGCCCGCCGUCCAGGGCCCCUGUCCAAGCUCGCGGACGCCGGCGGCGUUUUCCAGCUCGAGUGCUCAGCCUAGGGCAGGCUCUGCGUGCGCCCCCUCGAGUGCCGGCCUGGGCCCUGCCAGGCAGAGGCGCUCUUGCGUCAGGACGGCGCCGCCGGGGCCCCGCGAUUCCAACUCGGGGGUCCCGGAGCGGCGCGGGGCGGGGACGGCCUGGCAGCUCCCAGCAGCGAGGGGCGAUCCCCGCCCGCGCAGCAGACCCCGAGCUGCCCAGGCCCUUCCUGCGCCACGUGUACCCAGAGCUCCGCCCGGGGGAGACUUCGCUGCUUGUUGGAGAUGCCCAGCGGUAGGGGGCGAGGACUCGGGAGGAAGAUAAACGGGGGAUCCCGUGUCUGGm6ACUUUCUCCUCCACCCUCUUCCCUUCGCAGCUGUGAAUCCUGGGAGGGGAAGGGUGGCCGCCCCGCCAGCAGAGAGCUGAAGGUGUUCCGUGGUCAGUGAGGGCUGGCACUGGCUCUGCACGAAGAUCUCCUCACCUCCCCAGCGGCUCCUGGCCAGCUCCCCACGGAGAGCCCAGGm6ACACUUGUCCCUGGm6ACACAGUGGUGCAGCCAUGCUUGGGCCAAACCAUGAGGCCACCAGAACCGCGAAAGGCUACUGUACUGAGAGGGAUACUGCGAGAGAGGCCCACAGGUUUCCAAGCAUCCCUCUCACUCCGCACACUCAUCUCCACGACCGGCUUUAAGUGCGGCCUUGAGGCCUGGCUCCCUGUUUGGm6ACUUCUCUGCACCUCCAGGAGCUCACUUCCCGUCACAGCUGGAUGCCUCCUCCCGCAGGCACCUCCCGGGCAUCCUCCCGCCCCAGGCUGCACCUUCUGUGGGm6ACUGGCCCCCGCAGGCACCUCCCGGGCACCCUCCCGCCCCAGGCUGCAGCUUCUGUGGGm6ACUGAGCCCCGCAGGCACCUCCCCGGCAUCCUCCCGCCCCAGGCUGCACCUUCUGUGGGm6ACUGAGCCCCGCAGGCACUUCCCCGGCAUCCUCCCGCCCCAGGCUGCAGCUUCUGUGGGm6ACUGACCUUAAGACCCCAUCGGUUCCUCCUGAGAGCAGCAGAUCUCAGCCAGAUGCUGCCGGGAGGGAGGUGCUAGCGUCCACACCCAGACGGGUCCAGUCCAGCCCUGCUCUCCCUGGUCUCCAGGCAGGGCCCUCCCAGGGUGGm6ACAUUGCCCAUCUCUGCCUGGCCAGGGGCUGCUGACCCACUGGUUCCAGAGUCUGAGCCUGUCCUGCACAAGUACCAUGGm6ACAGGGGUCAGCCGGGCACUGAAGAGGCGUGGCAGAAUUGGGCAGGGCAAGGGCCCCAGCUGGCAAGCUGGAGUCAGGGCAAUUCCAACCAAGAAm6ACUGCGGCAGGCCGGGUGCAGUGUCUCAAGCCUAUAAUCCCAGCm6ACUUUGGGAGGCAGUGGGAGAAUCGCUUGAGCCCGGGAGUUUGAGACCAGCAUUGGUAACAUAGAGm6ACCCUAUCGCUACAAGAAAAAAAAAAAAAAAAAGCUGGGCAUGGUGGUGCACACCUGUUGUCCCAGCUAUUCAGGAGGCUGACGUGGGAGGAUUGCUUGUGCCCAGGGGUUGCAGGCUGCAGUGAGCUGUGAUCAUACCACUGCACUCCAGCCUGGGCGACAGAGAACCUCUCUAAAAAAAAAGGAAAAUGAAAAAUAAAUGGGGGCAGAAGCUGAGCCAAGCAGAGGCGGGCAGCUCCUCCUCCAGGGCCCACCUGGCCUGCUGGGGA
Sequence (MODOMICS CODE ENCODING) AUGCGCAACCCGCGCGCCGUCGUCCCUGGCAACACUGGCUGCUCUAGCGCCUGGCGGGGUCUCACGGGCGGGCCUGGGCGCACGGCCAAAGCGCCAGGUCUCCACCCCCAGCCCCCGGCGUCCUGCAGCCGGAGCCUGCCUCGCCUGGCUCCUGCGCCCGCCGUCCAGGGCCCCUGUCCAAGCUCGCGGACGCCGGCGGCGUUUUCCAGCUCGAGUGCUCAGCCUAGGGCAGGCUCUGCGUGCGCCCCCUCGAGUGCCGGCCUGGGCCCUGCCAGGCAGAGGCGCUCUUGCGUCAGGACGGCGCCGCCGGGGCCCCGCGAUUCCAACUCGGGGGUCCCGGAGCGGCGCGGGGCGGGGACGGCCUGGCAGCUCCCAGCAGCGAGGGGCGAUCCCCGCCCGCGCAGCAGACCCCGAGCUGCCCAGGCCCUUCCUGCGCCACGUGUACCCAGAGCUCCGCCCGGGGGAGACUUCGCUGCUUGUUGGAGAUGCCCAGCGGUAGGGGGCGAGGACUCGGGAGGAAGAUAAACGGGGGAUCCCGUGUCUGG2000000006ACUUUCUCCUCCACCCUCUUCCCUUCGCAGCUGUGAAUCCUGGGAGGGGAAGGGUGGCCGCCCCGCCAGCAGAGAGCUGAAGGUGUUCCGUGGUCAGUGAGGGCUGGCACUGGCUCUGCACGAAGAUCUCCUCACCUCCCCAGCGGCUCCUGGCCAGCUCCCCACGGAGAGCCCAGG2000000006ACACUUGUCCCUGG2000000006ACACAGUGGUGCAGCCAUGCUUGGGCCAAACCAUGAGGCCACCAGAACCGCGAAAGGCUACUGUACUGAGAGGGAUACUGCGAGAGAGGCCCACAGGUUUCCAAGCAUCCCUCUCACUCCGCACACUCAUCUCCACGACCGGCUUUAAGUGCGGCCUUGAGGCCUGGCUCCCUGUUUGG2000000006ACUUCUCUGCACCUCCAGGAGCUCACUUCCCGUCACAGCUGGAUGCCUCCUCCCGCAGGCACCUCCCGGGCAUCCUCCCGCCCCAGGCUGCACCUUCUGUGGG2000000006ACUGGCCCCCGCAGGCACCUCCCGGGCACCCUCCCGCCCCAGGCUGCAGCUUCUGUGGG2000000006ACUGAGCCCCGCAGGCACCUCCCCGGCAUCCUCCCGCCCCAGGCUGCACCUUCUGUGGG2000000006ACUGAGCCCCGCAGGCACUUCCCCGGCAUCCUCCCGCCCCAGGCUGCAGCUUCUGUGGG2000000006ACUGACCUUAAGACCCCAUCGGUUCCUCCUGAGAGCAGCAGAUCUCAGCCAGAUGCUGCCGGGAGGGAGGUGCUAGCGUCCACACCCAGACGGGUCCAGUCCAGCCCUGCUCUCCCUGGUCUCCAGGCAGGGCCCUCCCAGGGUGG2000000006ACAUUGCCCAUCUCUGCCUGGCCAGGGGCUGCUGACCCACUGGUUCCAGAGUCUGAGCCUGUCCUGCACAAGUACCAUGG2000000006ACAGGGGUCAGCCGGGCACUGAAGAGGCGUGGCAGAAUUGGGCAGGGCAAGGGCCCCAGCUGGCAAGCUGGAGUCAGGGCAAUUCCAACCAAGAA2000000006ACUGCGGCAGGCCGGGUGCAGUGUCUCAAGCCUAUAAUCCCAGC2000000006ACUUUGGGAGGCAGUGGGAGAAUCGCUUGAGCCCGGGAGUUUGAGACCAGCAUUGGUAACAUAGAG2000000006ACCCUAUCGCUACAAGAAAAAAAAAAAAAAAAAGCUGGGCAUGGUGGUGCACACCUGUUGUCCCAGCUAUUCAGGAGGCUGACGUGGGAGGAUUGCUUGUGCCCAGGGGUUGCAGGCUGCAGUGAGCUGUGAUCAUACCACUGCACUCCAGCCUGGGCGACAGAGAACCUCUCUAAAAAAAAAGGAAAAUGAAAAAUAAAUGGGGGCAGAAGCUGAGCCAAGCAGAGGCGGGCAGCUCCUCCUCCAGGGCCCACCUGGCCUGCUGGGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 546 723 737 916 1019 1078 1137 1196 1342 1422 1517 1561 1627
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 17:81928374:+ 17:81929581:+ 17:81929595:+ 17:81929774:+ 17:81929877:+ 17:81929936:+ 17:81929995:+ 17:81930054:+ 17:81930200:+ 17:81930280:+ 17:81930375:+ 17:81930419:+ 17:81930485:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
3TeAZFYFxgvp
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6AyXsheySjfx
aHkqKEJkRYyb
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VyCX26p5UBRL
bXBqJigD9oV3
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL