General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000474627
Gene ID:	ENSG00000171953
Gene Name:	ATPAF2
Sequence (UNICHARACTER ENCODING)	AUGCGGAAGAUGGCGGCGUCCAAGGGAGGUUGAGGGCUCUGAGGAGGCGUUGAGAGGUUUCCGUACAGCCCGACCGUGCGGCUUUGGGGAUCCCAUCGCUCUGUGUUUCCUGCUCCAGGUUUCGCGUCUCGCAUCUUCCCAGACCCUCGGGCGCGAUGUGGAGGAGCUGCCUCCGGCUGCGGGACGGGGGACGCCGUCUCCUGAAUCGGCCGGCGGGUGGCCCCAGCGCUUCUAUGAGUCCGGGGCCAACCAUCCCGUCUCCAGCCCGGGCUUACGCCCCGCCGACAGAAAGGAAGAGGUUUUAUCAGAAUGUCAGCAUCACACAGGGUGAAGGUGGCUUUGAGAUAAACCUGGACCACAGGAAGCUGAAAACUCCCCAAGCCAAGCUCUPUACCGUCCCCAGCGAGGCCCUGGCCAUUGCAGUGGCUACUGAGUGGGAUUCCCAGCAGGAUACCAUCAAGUACUACACCAUGCACCUGACCACAUUGUGCAACACAUCAUUGGACAACCCAACCCAGAGAAACAAGGAUCAGCUGAUCCGGGCAGCCGUGAAGUUUCUGGACACCGACACCAUCUGCUACAGGGUGGAGGAGCCCGAGACAUUAGUGGAACUUCAAAGGAAUGAGUGGGAUCCAAUCAUCGAAUGGGCUGAGAAAAGAUACGGCGUGGAGAUCAGCUCCUCCACCAGCAUAAUGGGACCCAGCAUCCCUGCCAAAACUCGGGAGGUGCUCGUCAGCCACCUGGCAUCUUACAACACAUGGGCUPUACAAGGGAUUGAGUUUGUAGCUGCCCAGCUCAAGUCCAUGGUGCUAACCUUGGGCCUGAUUGACCUGCGCCUGACAGUGGAGCAGGCCGUGCUGCUGUCACGCCUGGAGGAGGAGUACCAGAUCCAGAAGUGGGGCAACAUUGAGUGGGCCCAUGACUAUGAGCUGCAGGAGCUGCGGGCCCGCACCGCCGCCGGCACCCUCUUCAPCCAUCUCUGCUCCGAGAGCACCACAGUCAAGCACAAGCUCCUGAAGGAGUGAGGCCUGGGCAGAGCACACUCAGCAGGAUAGAGGCAGUGCAGCCACAGCUCCCCCGGCCUUCAGGGCUCCCCAGCCUGUGGGGCUGGCUUCCUUGGCUUUUGGGGЖCUCGGCCUCAGCGUCACCCUGAGAUUCCCCCCGAGACACAGUGCGCUAGUACGGCUGUCCGGAGGUCAGCCUGAUUUCAACCCAGGUGCCCCUGGCCUGGCCAGCAGUGAAUGUAGGAGAUGAAUUGUGCAAGUGЖCUUUCUCUCGACUCUGAUUUUAUUAAAUAUUUCUCCACCCUGGAAAUGUGCUGAGCCCUGUUUUCACGUAUGCCUCUGCACUUCUCCAUUCUUCCUGUUUUGUCUAGGUUCCAGAGGGUUAAACAGCUUAUCUCCCAUGGCGUGUUUGGAUAUCUGCUGCCUGUGGUCAGGAACCUUGCACUGGGGAAACAAUCAUGUAAUCCACAGACAACUCUAUUUGUGUUCUUCAGCCUCAGCCUGAAGGCUUUUUUUUGGCUGGCUUUUAAUCAAACAAUCUUUUGAAACAA
Sequence (SHORT NAMES ENCODING)	AUGCGGAAGAUGGCGGCGUCCAAGGGAGGUUGAGGGCUCUGAGGAGGCGUUGAGAGGUUUCCGUACAGCCCGACCGUGCGGCUUUGGGGAUCCCAUCGCUCUGUGUUUCCUGCUCCAGGUUUCGCGUCUCGCAUCUUCCCAGACCCUCGGGCGCGAUGUGGAGGAGCUGCCUCCGGCUGCGGGACGGGGGACGCCGUCUCCUGAAUCGGCCGGCGGGUGGCCCCAGCGCUUCUAUGAGUCCGGGGCCAACCAUCCCGUCUCCAGCCCGGGCUUACGCCCCGCCGACAGAAAGGAAGAGGUUUUAUCAGAAUGUCAGCAUCACACAGGGUGAAGGUGGCUUUGAGAUAAACCUGGACCACAGGAAGCUGAAAACUCCCCAAGCCAAGCUCUYUACCGUCCCCAGCGAGGCCCUGGCCAUUGCAGUGGCUACUGAGUGGGAUUCCCAGCAGGAUACCAUCAAGUACUACACCAUGCACCUGACCACAUUGUGCAACACAUCAUUGGACAACCCAACCCAGAGAAACAAGGAUCAGCUGAUCCGGGCAGCCGUGAAGUUUCUGGACACCGACACCAUCUGCUACAGGGUGGAGGAGCCCGAGACAUUAGUGGAACUUCAAAGGAAUGAGUGGGAUCCAAUCAUCGAAUGGGCUGAGAAAAGAUACGGCGUGGAGAUCAGCUCCUCCACCAGCAUAAUGGGACCCAGCAUCCCUGCCAAAACUCGGGAGGUGCUCGUCAGCCACCUGGCAUCUUACAACACAUGGGCUYUACAAGGGAUUGAGUUUGUAGCUGCCCAGCUCAAGUCCAUGGUGCUAACCUUGGGCCUGAUUGACCUGCGCCUGACAGUGGAGCAGGCCGUGCUGCUGUCACGCCUGGAGGAGGAGUACCAGAUCCAGAAGUGGGGCAACAUUGAGUGGGCCCAUGACUAUGAGCUGCAGGAGCUGCGGGCCCGCACCGCCGCCGGCACCCUCUUCAYCCAUCUCUGCUCCGAGAGCACCACAGUCAAGCACAAGCUCCUGAAGGAGUGAGGCCUGGGCAGAGCACACUCAGCAGGAUAGAGGCAGUGCAGCCACAGCUCCCCCGGCCUUCAGGGCUCCCCAGCCUGUGGGGCUGGCUUCCUUGGCUUUUGGGGm6ACUCGGCCUCAGCGUCACCCUGAGAUUCCCCCCGAGACACAGUGCGCUAGUACGGCUGUCCGGAGGUCAGCCUGAUUUCAACCCAGGUGCCCCUGGCCUGGCCAGCAGUGAAUGUAGGAGAUGAAUUGUGCAAGUGm6ACUUUCUCUCGACUCUGAUUUUAUUAAAUAUUUCUCCACCCUGGAAAUGUGCUGAGCCCUGUUUUCACGUAUGCCUCUGCACUUCUCCAUUCUUCCUGUUUUGUCUAGGUUCCAGAGGGUUAAACAGCUUAUCUCCCAUGGCGUGUUUGGAUAUCUGCUGCCUGUGGUCAGGAACCUUGCACUGGGGAAACAAUCAUGUAAUCCACAGACAACUCUAUUUGUGUUCUUCAGCCUCAGCCUGAAGGCUUUUUUUUGGCUGGCUUUUAAUCAAACAAUCUUUUGAAACAA
Sequence (MODOMICS CODE ENCODING)	AUGCGGAAGAUGGCGGCGUCCAAGGGAGGUUGAGGGCUCUGAGGAGGCGUUGAGAGGUUUCCGUACAGCCCGACCGUGCGGCUUUGGGGAUCCCAUCGCUCUGUGUUUCCUGCUCCAGGUUUCGCGUCUCGCAUCUUCCCAGACCCUCGGGCGCGAUGUGGAGGAGCUGCCUCCGGCUGCGGGACGGGGGACGCCGUCUCCUGAAUCGGCCGGCGGGUGGCCCCAGCGCUUCUAUGAGUCCGGGGCCAACCAUCCCGUCUCCAGCCCGGGCUUACGCCCCGCCGACAGAAAGGAAGAGGUUUUAUCAGAAUGUCAGCAUCACACAGGGUGAAGGUGGCUUUGAGAUAAACCUGGACCACAGGAAGCUGAAAACUCCCCAAGCCAAGCUCU2000000009UUACCGUCCCCAGCGAGGCCCUGGCCAUUGCAGUGGCUACUGAGUGGGAUUCCCAGCAGGAUACCAUCAAGUACUACACCAUGCACCUGACCACAUUGUGCAACACAUCAUUGGACAACCCAACCCAGAGAAACAAGGAUCAGCUGAUCCGGGCAGCCGUGAAGUUUCUGGACACCGACACCAUCUGCUACAGGGUGGAGGAGCCCGAGACAUUAGUGGAACUUCAAAGGAAUGAGUGGGAUCCAAUCAUCGAAUGGGCUGAGAAAAGAUACGGCGUGGAGAUCAGCUCCUCCACCAGCAUAAUGGGACCCAGCAUCCCUGCCAAAACUCGGGAGGUGCUCGUCAGCCACCUGGCAUCUUACAACACAUGGGCU2000000009UUACAAGGGAUUGAGUUUGUAGCUGCCCAGCUCAAGUCCAUGGUGCUAACCUUGGGCCUGAUUGACCUGCGCCUGACAGUGGAGCAGGCCGUGCUGCUGUCACGCCUGGAGGAGGAGUACCAGAUCCAGAAGUGGGGCAACAUUGAGUGGGCCCAUGACUAUGAGCUGCAGGAGCUGCGGGCCCGCACCGCCGCCGGCACCCUCUUCA2000000009UCCAUCUCUGCUCCGAGAGCACCACAGUCAAGCACAAGCUCCUGAAGGAGUGAGGCCUGGGCAGAGCACACUCAGCAGGAUAGAGGCAGUGCAGCCACAGCUCCCCCGGCCUUCAGGGCUCCCCAGCCUGUGGGGCUGGCUUCCUUGGCUUUUGGGG2000000006ACUCGGCCUCAGCGUCACCCUGAGAUUCCCCCCGAGACACAGUGCGCUAGUACGGCUGUCCGGAGGUCAGCCUGAUUUCAACCCAGGUGCCCCUGGCCUGGCCAGCAGUGAAUGUAGGAGAUGAAUUGUGCAAGUG2000000006ACUUUCUCUCGACUCUGAUUUUAUUAAAUAUUUCUCCACCCUGGAAAUGUGCUGAGCCCUGUUUUCACGUAUGCCUCUGCACUUCUCCAUUCUUCCUGUUUUGUCUAGGUUCCAGAGGGUUAAACAGCUUAUCUCCCAUGGCGUGUUUGGAUAUCUGCUGCCUGUGGUCAGGAACCUUGCACUGGGGAAACAAUCAUGUAAUCCACAGACAACUCUAUUUGUGUUCUUCAGCCUCAGCCUGAAGGCUUUUUUUUGGCUGGCUUUUAAUCAAACAAUCUUUUGAAACAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	391	765	973	1130	1266
Modification Positions	Y	Y	Y	m6A	m6A
Genomic Coordinates	17:18028320:-	17:18021751:-	17:18018601:-	17:18018444:-	17:18018308:-
Level of Experimental Evidence	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8