Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000415816
Gene ID: ENSG00000068079
Gene Name: IFI35
Sequence (UNICHARACTER ENCODING) CAAЖCAGCCUGCGAGCAGAGCCUCCUGAGGUGUAUUUCGGGUCUUGCUGGGGCUGAGAGAGЖCCACAGCCCUUUGGGGGGUACAAЖCAAGAGUUCAGUUGCUGUGAAUUCUGCCACUGUGCCCAGCUCUGAAGCCUCAGCUCUUGCCAAЖCAGACCCGAGЖCCCAUGUCAGCCCCACUGGAUGCCGCCCUCCACGCCCUUCAGGAGGAGCAGGCCAGACUCAAGAUGAGGCUGUGGGACCUGCAGCAGCUGAGAAAGGAGCUCGGGGACUCCCCCAAAGACAAGGUCCCAUUUUCAGUGCCCAAGAUCCCCCUGGUAUUCCGAGGACACACCCAGCAGGACCCGGAAGUGCCUAAGUCUPUAGUUUCCAAUUUGCGGAUCCACUGCCCUCUGCUUGCGGGCUCUGCUCUGAUCACCUUUGAUGACCCCAAAGUGGCUGAGCAGGUGCUGCAACAAAAGGAGCACACGAUCAACAUGGAGGAGUGCCGGCUGCGGGUGCAGGUCCAGCCCUUGGAGCUGCCCAUGGUCACCACCAUCCAGAUGUCCAGCCAGUUGAGUGGCCGGAGGGUGUUGGUCACUGGAUUUCCUGCCAGCCUCAGGCUGAGUGAGGAGGAGCUGCUGGACAAGCUAGAGAUCUUCUUUGGCAAGACUAGGAACGGAGGUGGCGAUGUGGACGUUCGGGAGCUACUGCCAGGGAGUGUCAUGCUGGGGUUUGCUAGGGAUGGAGUGGCUCAGCGUCUGUGCCAAAUCGGCCAGUUCACAGUGCCACUGGGUGGGCAGCAAGUCCCUCUGAGAGUCUCUCCGUAUGUGAʍCGGGGAGAUCCAGAAGGCUGAGAUCAGGUCGCAGCCAGUUCCCCGCUCGGUACUGGUGCUCAACAUUCCUGAUAUCUUGGAUGGCBCGGAGCUGCAUGACGUCCUGGAGAUCCACUUCCAGAAGCCCACCCGCGGGGGCGGGGA#GUAGAGGCCCUGACAGUCGUACCCCAAGGACAGCAGGGCCUAGCAGUCUUCACCUCUGAGUCAGGCUAGGGGCCUCCCCUUCUCAPCCUCCCCACCCCCCCGCCAAGGUUCUCACACUGGCCUGGGCUUGGGUGCCCAUAUAGGAGGUCUGUAUGUUCACCAACAGUGCGGAGGGGUCACACAUUGCAAAACACUGCCCAGAЖCAGUAAAAAGAGCCUGCAUGCCA
Sequence (SHORT NAMES ENCODING) CAAm6ACAGCCUGCGAGCAGAGCCUCCUGAGGUGUAUUUCGGGUCUUGCUGGGGCUGAGAGAGm6ACCACAGCCCUUUGGGGGGUACAAm6ACAAGAGUUCAGUUGCUGUGAAUUCUGCCACUGUGCCCAGCUCUGAAGCCUCAGCUCUUGCCAAm6ACAGACCCGAGm6ACCCAUGUCAGCCCCACUGGAUGCCGCCCUCCACGCCCUUCAGGAGGAGCAGGCCAGACUCAAGAUGAGGCUGUGGGACCUGCAGCAGCUGAGAAAGGAGCUCGGGGACUCCCCCAAAGACAAGGUCCCAUUUUCAGUGCCCAAGAUCCCCCUGGUAUUCCGAGGACACACCCAGCAGGACCCGGAAGUGCCUAAGUCUYUAGUUUCCAAUUUGCGGAUCCACUGCCCUCUGCUUGCGGGCUCUGCUCUGAUCACCUUUGAUGACCCCAAAGUGGCUGAGCAGGUGCUGCAACAAAAGGAGCACACGAUCAACAUGGAGGAGUGCCGGCUGCGGGUGCAGGUCCAGCCCUUGGAGCUGCCCAUGGUCACCACCAUCCAGAUGUCCAGCCAGUUGAGUGGCCGGAGGGUGUUGGUCACUGGAUUUCCUGCCAGCCUCAGGCUGAGUGAGGAGGAGCUGCUGGACAAGCUAGAGAUCUUCUUUGGCAAGACUAGGAACGGAGGUGGCGAUGUGGACGUUCGGGAGCUACUGCCAGGGAGUGUCAUGCUGGGGUUUGCUAGGGAUGGAGUGGCUCAGCGUCUGUGCCAAAUCGGCCAGUUCACAGUGCCACUGGGUGGGCAGCAAGUCCCUCUGAGAGUCUCUCCGUAUGUGAAmCGGGGAGAUCCAGAAGGCUGAGAUCAGGUCGCAGCCAGUUCCCCGCUCGGUACUGGUGCUCAACAUUCCUGAUAUCUUGGAUGGCCmCGGAGCUGCAUGACGUCCUGGAGAUCCACUUCCAGAAGCCCACCCGCGGGGGCGGGGAGmGUAGAGGCCCUGACAGUCGUACCCCAAGGACAGCAGGGCCUAGCAGUCUUCACCUCUGAGUCAGGCUAGGGGCCUCCCCUUCUCAYCCUCCCCACCCCCCCGCCAAGGUUCUCACACUGGCCUGGGCUUGGGUGCCCAUAUAGGAGGUCUGUAUGUUCACCAACAGUGCGGAGGGGUCACACAUUGCAAAACACUGCCCAGAm6ACAGUAAAAAGAGCCUGCAUGCCA
Sequence (MODOMICS CODE ENCODING) CAA2000000006ACAGCCUGCGAGCAGAGCCUCCUGAGGUGUAUUUCGGGUCUUGCUGGGGCUGAGAGAG2000000006ACCACAGCCCUUUGGGGGGUACAA2000000006ACAAGAGUUCAGUUGCUGUGAAUUCUGCCACUGUGCCCAGCUCUGAAGCCUCAGCUCUUGCCAA2000000006ACAGACCCGAG2000000006ACCCAUGUCAGCCCCACUGGAUGCCGCCCUCCACGCCCUUCAGGAGGAGCAGGCCAGACUCAAGAUGAGGCUGUGGGACCUGCAGCAGCUGAGAAAGGAGCUCGGGGACUCCCCCAAAGACAAGGUCCCAUUUUCAGUGCCCAAGAUCCCCCUGGUAUUCCGAGGACACACCCAGCAGGACCCGGAAGUGCCUAAGUCU2000000009UUAGUUUCCAAUUUGCGGAUCCACUGCCCUCUGCUUGCGGGCUCUGCUCUGAUCACCUUUGAUGACCCCAAAGUGGCUGAGCAGGUGCUGCAACAAAAGGAGCACACGAUCAACAUGGAGGAGUGCCGGCUGCGGGUGCAGGUCCAGCCCUUGGAGCUGCCCAUGGUCACCACCAUCCAGAUGUCCAGCCAGUUGAGUGGCCGGAGGGUGUUGGUCACUGGAUUUCCUGCCAGCCUCAGGCUGAGUGAGGAGGAGCUGCUGGACAAGCUAGAGAUCUUCUUUGGCAAGACUAGGAACGGAGGUGGCGAUGUGGACGUUCGGGAGCUACUGCCAGGGAGUGUCAUGCUGGGGUUUGCUAGGGAUGGAGUGGCUCAGCGUCUGUGCCAAAUCGGCCAGUUCACAGUGCCACUGGGUGGGCAGCAAGUCCCUCUGAGAGUCUCUCCGUAUGUGA2000000090ACGGGGAGAUCCAGAAGGCUGAGAUCAGGUCGCAGCCAGUUCCCCGCUCGGUACUGGUGCUCAACAUUCCUGAUAUCUUGGAUGGC2000000090CCGGAGCUGCAUGACGUCCUGGAGAUCCACUUCCAGAAGCCCACCCGCGGGGGCGGGGA2000000090GGUAGAGGCCCUGACAGUCGUACCCCAAGGACAGCAGGGCCUAGCAGUCUUCACCUCUGAGUCAGGCUAGGGGCCUCCCCUUCUCA2000000009UCCUCCCCACCCCCCCGCCAAGGUUCUCACACUGGCCUGGGCUUGGGUGCCCAUAUAGGAGGUCUGUAUGUUCACCAACAGUGCGGAGGGGUCACACAUUGCAAAACACUGCCCAGA2000000006ACAGUAAAAAGAGCCUGCAUGCCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 4 62 86 150 161 360 811 897 956 1042 1159
Modification Positions m6A m6A m6A m6A m6A Y Am Cm Gm Y m6A
Genomic Coordinates 17:43006787:+ 17:43006845:+ 17:43006869:+ 17:43006933:+ 17:43006944:+ 17:43013122:+ 17:43013860:+ 17:43014171:+ 17:43014230:+ 17:43014316:+ 17:43014433:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
jaSvBXBkn3xs
YkSG92k4EHDM
jaSvBXBkn3xs
YkSG92k4EHDM
jaSvBXBkn3xs
YkSG92k4EHDM
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr