Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000436828
Gene ID: ENSG00000141027
Gene Name: NCOR1
Sequence (UNICHARACTER ENCODING) CAAGAUGGCGGCCAAGGUGGCGAAGCAGCAGCCGCGGCGGCGGCGGCGGCUGGAGUGAGCGUCCGACUCGCCGCGCCGAACGAGGUCCCGGUGUAGGGCCGCGCGCCGUGGCCGCGUCCCACUCCUCAGGCCGGGGCGCACGUCGGCUCCCACGCUUAGCCAGCUCCCGAGUUUCACUCUUGUUGCCCAGGCUGGAGUGCAAUGGCACGAUCUCGGCUCACCGCAACCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCUCGAGUAGCUGGGAUUACAGGUGGUUUCCUAGAAACAUGAUUGUUUAUUGGCAUUGAUCUCACAGUCUGGUGAGGACUUCUUUACUGAUAAUGUCAAGUUCAGGUUAUCCUCCCAACCAAGGAGCAUUCAGCACAGAACAAAGUCGUUAUCCUCCUCACUCUGUCCAGUAUACAUUUCCCAACACCCGCCACCAGCAGGAGUUCGCAGUCCCUGAUUAUCGUUCCUCUCAUCUUGAAGUGAGUCAGGCAUCACAGCUUUUGCAGCAACAGCAGCAGCAACAGCUUCGAAGGCGACCUUCCUUGCUUUCAGAAUUUCACCCAGGUUCUGACAGGCCUCAAGAAAGGAGAACUAGUUAUGAACCGUUUCAUCCAGGCCCAUCCCCAGUGGAUCAUGAUUCACUGGAAUCGAAGCGACCACGUCUGGAACAGGUUUCUGAUUCUCAUUUUCAGCGUGUCAGUGCUGCGGUUUUGCCUUUAGUGCACCCGCUGCCAGAAGGGCUGAGGGCUUCUGCAGAUGCUAAGAAGGAUCCAGCAUUCGGAGGCAAACAUGAAGCUCCAUCCUCUCCAAUUUCGGGGCAACCAUGUGGAGAUGAUCAAAAUGCUUCACCUUCAAAACUCUCAAAGGAAGAGUUAAUACAGAGUAUGGAUCGUGUAGAUCGAGAAAUUGCAAAAGUAGAACAGCAGAUCCUUAAACUGAAAAAGAAACAACAACAGCUUGAAGAAGAGGCAGCUAAACCUCCUGAGCCUGAGAAGCCCGUGUCCCCUCCUCCUGUGGAGCAGAAACACCGCAGUAUUGUCCAAAUUAUUUAUGAUGAGAAUCGGAAAAAAGCAGAAGAAGCUCAUAAAAUUUUUGAAGGUCUUGGCCCAAAAGUUGAACUGCCACUGUAUAACCAGCCAUCAGAUACCAAGGUGUACCAUGAGAACAUCAAGACUGGAGUACCUGCAAGGCGCAUGAUGAAAAACCAGGUGAUGAGGAAAAAACUCAUUUUAUUUUUUAAAAGAAGAAAUCAUGCAAGAAAACAAAGGGAACAAAAAAUCUGCCAGCGUUAUGAUCAGCUCAUGGAGGCAUGGGAGAAAAAAGUGGACAGAAUAGAAAAUAAUCCUCGGAGGAAAGCUAAAGAAAGCAAAACAAGGGAAUACUAUGAAAAGCAGUUUCCAGAAAUUCGAAAACAAAGAGAACAGCAAGAAAGAUUUCAGCGAGUUGGGCAGAGGGGAGCUGGUCUUUCAGCCACCAUUGCUAGGAGUGAGCAUGAGAUUUCUGAAAUUAUUGAUGGGCUCUCUGAGCAGGAGAAUAAUGAGAAACAAAUGCGGCAGCUCUCUGUGAUUCCACCUAUGAUGUUUGAUGCAGAACAAAGACGAGUCAAGUUCAUUAЖCAUGAAUGGGCUUAUGGAGGACCCUAUGAAAGUGUAUAAAGAUAGGCAGUUUAUGAAUGUUUGGACUGACCAUGAAAAGGAGAUCUPUAAGGACAAGUUUAUCCAGCAUCCAAAAAACUUUGGACUAAUUGCAUCAUACUUGGAGAGGAAGAGUGUUCCUGAUUGUGUUUUGUAUUACUAUUUAACCAAGAAAAAUGAGAAUUAUAAAGCCCUCGUCAGAAGGAAUUAUGGGAAACGCAGAGGCAGAAACCAGCAAAUUGCUCGACCCUCGCAAGAAGAAAAAGUAGAAGAAAAAGAAGAGGAUAAAGCAGAAAAAACAGAAAAAAAA
Sequence (SHORT NAMES ENCODING) CAAGAUGGCGGCCAAGGUGGCGAAGCAGCAGCCGCGGCGGCGGCGGCGGCUGGAGUGAGCGUCCGACUCGCCGCGCCGAACGAGGUCCCGGUGUAGGGCCGCGCGCCGUGGCCGCGUCCCACUCCUCAGGCCGGGGCGCACGUCGGCUCCCACGCUUAGCCAGCUCCCGAGUUUCACUCUUGUUGCCCAGGCUGGAGUGCAAUGGCACGAUCUCGGCUCACCGCAACCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCUCGAGUAGCUGGGAUUACAGGUGGUUUCCUAGAAACAUGAUUGUUUAUUGGCAUUGAUCUCACAGUCUGGUGAGGACUUCUUUACUGAUAAUGUCAAGUUCAGGUUAUCCUCCCAACCAAGGAGCAUUCAGCACAGAACAAAGUCGUUAUCCUCCUCACUCUGUCCAGUAUACAUUUCCCAACACCCGCCACCAGCAGGAGUUCGCAGUCCCUGAUUAUCGUUCCUCUCAUCUUGAAGUGAGUCAGGCAUCACAGCUUUUGCAGCAACAGCAGCAGCAACAGCUUCGAAGGCGACCUUCCUUGCUUUCAGAAUUUCACCCAGGUUCUGACAGGCCUCAAGAAAGGAGAACUAGUUAUGAACCGUUUCAUCCAGGCCCAUCCCCAGUGGAUCAUGAUUCACUGGAAUCGAAGCGACCACGUCUGGAACAGGUUUCUGAUUCUCAUUUUCAGCGUGUCAGUGCUGCGGUUUUGCCUUUAGUGCACCCGCUGCCAGAAGGGCUGAGGGCUUCUGCAGAUGCUAAGAAGGAUCCAGCAUUCGGAGGCAAACAUGAAGCUCCAUCCUCUCCAAUUUCGGGGCAACCAUGUGGAGAUGAUCAAAAUGCUUCACCUUCAAAACUCUCAAAGGAAGAGUUAAUACAGAGUAUGGAUCGUGUAGAUCGAGAAAUUGCAAAAGUAGAACAGCAGAUCCUUAAACUGAAAAAGAAACAACAACAGCUUGAAGAAGAGGCAGCUAAACCUCCUGAGCCUGAGAAGCCCGUGUCCCCUCCUCCUGUGGAGCAGAAACACCGCAGUAUUGUCCAAAUUAUUUAUGAUGAGAAUCGGAAAAAAGCAGAAGAAGCUCAUAAAAUUUUUGAAGGUCUUGGCCCAAAAGUUGAACUGCCACUGUAUAACCAGCCAUCAGAUACCAAGGUGUACCAUGAGAACAUCAAGACUGGAGUACCUGCAAGGCGCAUGAUGAAAAACCAGGUGAUGAGGAAAAAACUCAUUUUAUUUUUUAAAAGAAGAAAUCAUGCAAGAAAACAAAGGGAACAAAAAAUCUGCCAGCGUUAUGAUCAGCUCAUGGAGGCAUGGGAGAAAAAAGUGGACAGAAUAGAAAAUAAUCCUCGGAGGAAAGCUAAAGAAAGCAAAACAAGGGAAUACUAUGAAAAGCAGUUUCCAGAAAUUCGAAAACAAAGAGAACAGCAAGAAAGAUUUCAGCGAGUUGGGCAGAGGGGAGCUGGUCUUUCAGCCACCAUUGCUAGGAGUGAGCAUGAGAUUUCUGAAAUUAUUGAUGGGCUCUCUGAGCAGGAGAAUAAUGAGAAACAAAUGCGGCAGCUCUCUGUGAUUCCACCUAUGAUGUUUGAUGCAGAACAAAGACGAGUCAAGUUCAUUAm6ACAUGAAUGGGCUUAUGGAGGACCCUAUGAAAGUGUAUAAAGAUAGGCAGUUUAUGAAUGUUUGGACUGACCAUGAAAAGGAGAUCUYUAAGGACAAGUUUAUCCAGCAUCCAAAAAACUUUGGACUAAUUGCAUCAUACUUGGAGAGGAAGAGUGUUCCUGAUUGUGUUUUGUAUUACUAUUUAACCAAGAAAAAUGAGAAUUAUAAAGCCCUCGUCAGAAGGAAUUAUGGGAAACGCAGAGGCAGAAACCAGCAAAUUGCUCGACCCUCGCAAGAAGAAAAAGUAGAAGAAAAAGAAGAGGAUAAAGCAGAAAAAACAGAAAAAAAA
Sequence (MODOMICS CODE ENCODING) CAAGAUGGCGGCCAAGGUGGCGAAGCAGCAGCCGCGGCGGCGGCGGCGGCUGGAGUGAGCGUCCGACUCGCCGCGCCGAACGAGGUCCCGGUGUAGGGCCGCGCGCCGUGGCCGCGUCCCACUCCUCAGGCCGGGGCGCACGUCGGCUCCCACGCUUAGCCAGCUCCCGAGUUUCACUCUUGUUGCCCAGGCUGGAGUGCAAUGGCACGAUCUCGGCUCACCGCAACCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCUCGAGUAGCUGGGAUUACAGGUGGUUUCCUAGAAACAUGAUUGUUUAUUGGCAUUGAUCUCACAGUCUGGUGAGGACUUCUUUACUGAUAAUGUCAAGUUCAGGUUAUCCUCCCAACCAAGGAGCAUUCAGCACAGAACAAAGUCGUUAUCCUCCUCACUCUGUCCAGUAUACAUUUCCCAACACCCGCCACCAGCAGGAGUUCGCAGUCCCUGAUUAUCGUUCCUCUCAUCUUGAAGUGAGUCAGGCAUCACAGCUUUUGCAGCAACAGCAGCAGCAACAGCUUCGAAGGCGACCUUCCUUGCUUUCAGAAUUUCACCCAGGUUCUGACAGGCCUCAAGAAAGGAGAACUAGUUAUGAACCGUUUCAUCCAGGCCCAUCCCCAGUGGAUCAUGAUUCACUGGAAUCGAAGCGACCACGUCUGGAACAGGUUUCUGAUUCUCAUUUUCAGCGUGUCAGUGCUGCGGUUUUGCCUUUAGUGCACCCGCUGCCAGAAGGGCUGAGGGCUUCUGCAGAUGCUAAGAAGGAUCCAGCAUUCGGAGGCAAACAUGAAGCUCCAUCCUCUCCAAUUUCGGGGCAACCAUGUGGAGAUGAUCAAAAUGCUUCACCUUCAAAACUCUCAAAGGAAGAGUUAAUACAGAGUAUGGAUCGUGUAGAUCGAGAAAUUGCAAAAGUAGAACAGCAGAUCCUUAAACUGAAAAAGAAACAACAACAGCUUGAAGAAGAGGCAGCUAAACCUCCUGAGCCUGAGAAGCCCGUGUCCCCUCCUCCUGUGGAGCAGAAACACCGCAGUAUUGUCCAAAUUAUUUAUGAUGAGAAUCGGAAAAAAGCAGAAGAAGCUCAUAAAAUUUUUGAAGGUCUUGGCCCAAAAGUUGAACUGCCACUGUAUAACCAGCCAUCAGAUACCAAGGUGUACCAUGAGAACAUCAAGACUGGAGUACCUGCAAGGCGCAUGAUGAAAAACCAGGUGAUGAGGAAAAAACUCAUUUUAUUUUUUAAAAGAAGAAAUCAUGCAAGAAAACAAAGGGAACAAAAAAUCUGCCAGCGUUAUGAUCAGCUCAUGGAGGCAUGGGAGAAAAAAGUGGACAGAAUAGAAAAUAAUCCUCGGAGGAAAGCUAAAGAAAGCAAAACAAGGGAAUACUAUGAAAAGCAGUUUCCAGAAAUUCGAAAACAAAGAGAACAGCAAGAAAGAUUUCAGCGAGUUGGGCAGAGGGGAGCUGGUCUUUCAGCCACCAUUGCUAGGAGUGAGCAUGAGAUUUCUGAAAUUAUUGAUGGGCUCUCUGAGCAGGAGAAUAAUGAGAAACAAAUGCGGCAGCUCUCUGUGAUUCCACCUAUGAUGUUUGAUGCAGAACAAAGACGAGUCAAGUUCAUUA2000000006ACAUGAAUGGGCUUAUGGAGGACCCUAUGAAAGUGUAUAAAGAUAGGCAGUUUAUGAAUGUUUGGACUGACCAUGAAAAGGAGAUCU2000000009UUAAGGACAAGUUUAUCCAGCAUCCAAAAAACUUUGGACUAAUUGCAUCAUACUUGGAGAGGAAGAGUGUUCCUGAUUGUGUUUUGUAUUACUAUUUAACCAAGAAAAAUGAGAAUUAUAAAGCCCUCGUCAGAAGGAAUUAUGGGAAACGCAGAGGCAGAAACCAGCAAAUUGCUCGACCCUCGCAAGAAGAAAAAGUAGAAGAAAAAGAAGAGGAUAAAGCAGAAAAAACAGAAAAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1641 1728
Modification Positions m6A Y
Genomic Coordinates 17:16139104:- 17:16139017:-
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ