Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000663269
Gene ID: ENSG00000267432
Gene Name: DNAH17-AS1
Sequence (UNICHARACTER ENCODING) CCCAUACUUGUCCACCUCGGGCAUGUUCAUGUCGUCGAUGAAGUAGACGAGCUUCUUAGUGCCUGGCGGCCCGUAGUUCCUCCCCGAUUUCUUCUCCAGCGGCUUCUCCAGCACCCCUAGAGAGGGCAGAGGGUCAGCUGCCCGCCUGCGCCUCCUGAGCCAGAGCCUGUUAGGUAGGGAGGGGCGCUACCUGCUUCCCCGGAGGACAGAAGGUGGGACCUGGCUGGGAUCCAAGUUUACCAAAGGCGUGUGGAGGGUACUGCACCGAUUCCUGCCUCUAAAUCACCAGUCGGUGGCCCUGCUUUGGGGЖCAGUUACCUGCAGUGGGЖCAUCGGGAUCCAGCUCAAAGGAGGGCACUUUAUCUGUCCAGGGCAGGAЖCUUUUUUGUGUCAGGAUCAAUGUAGUAGUCAAAAAUCGUUCCCUGCGAGGGGAACUUGAUAGUCUUGAAUUCGUUGAUCCACCAUUUACUGAЖCUCCACUCGAUAAUCCACAAGCUGUUGAGACACAGAAGUAAAAAUCAGGGCCCAGCUAAGCAGGAUGCUGAGAGЖCCCUGUGUGGGUGGCCGGGCCCCCCAGGUGCAUCACCUGGUCCUGGAACAUGGCGCCACCGAAGGCCCAGAAGCAGGUGAACACGAAGUACAGCUCGUACAGCUCCCUGGGGGAGUCGGGGGGCACGGUCUUCUCCGUGAGCAGGCACUCCAGCAGGUACAGAAUCGUUUGGAUCACCGUGAUCUCCGGCACUGGCGUGAUCUUCUUGAACCCAAAGCGCAACUUGUCCAGGCACGUGGGCAGGUACUUGUCAAAGAGGAUCAUCAGGUUGGCCUUCUCCGACUGCACCUUGCGCCUCUCGAUCCAGCUGCUCACCACCCUGGGGGUGACAGGAGGCGCCGAUGACACAGCCGCUGCUCUGGGUCUGCCAGUGUCCCUGCCUUGGUCACUCCUUGGAGGUGUCCAGUUCCUGCCUUGGCCCACGCUGCCUUCGUUUCUGGCUCCCUCUUCUCUGCUCCCAUAGGGUGUCCCCCUGAGGACUCCACGAUCCUGUCUUUUUCCUGUCCCCGUGUCUCAGCAGCUCCUACCCAGGCUUCAUUUCAGUUCCCCGGACAUUGUCUUUGCCUACCCUGAAAACUCCCACACAUGGUACAGUGGGUAGGAUGGUGGUGCUACAAAAGAAUGUCCACCCAGAACCCAGAAUGUGCCCUGAUUUGGAGAAAGGGCAUUAGCAGAUGUCAUCAAGGAUCUUGAGACAAGAUCAUCCUGGAUUUAGGGUGGACCCUGAAUCCAAUGACUGUGUCCUUAUAAGCAAAUGGGAAAUUUGGACACAGACAUACAGAGAAGGCCACGUGGAGACAGAGGCGGAGAUGGGAGGGGUGUGUCCAUAAGCCAAGGGAUGCCAAGGACCGCCGAGAGCCCCCAGGAGCUGGGAGAGAGGCCUGGGACAGGUUCUCCCGCAGAGCCUCAGAGGGAACCAGCACUGCCUACUCCUUGACUUCUGGCCUCCAGCACUGGGAGAGGAUAAAUGUCUGUUGUUUGAAGCUGCCCCAUUAGUGGUCAUUGUUUCAGCAGCUGGAGAAUGCUGUAUAAGCAGGCAAGUGUUGCUGGAGAAGCCGGCACAGAGGCACCCAGGCUCAGCAGCUCCUGGCCCUGUCCCCAUAGGGAACAUUCCACUUGGUAUCCCUCUCAAACCCUGGCCACACUGUGCUGCCUGCCUCCCAGCAGAGGGUCUCACUUCCCACGCAGAGAGCAAAGAAGUGCACCAGCAUGAACUCCGGAAACUUAAUUUUCUCUGCCUAUAGACUUGCAUGCACCUGAAAACAGCCAUGCCUGCAUCCCAUGGCCAAACAUCAUUCUUGUCUCGACAAAUACUACAAAGCUUCAUUCCUCUUGUUCCAGCCCUACCCUCCAGCACUCCAAGGCAGGACUCGCCUCACUUCUGGCGCCUCCUGCUGCCUCCUCCAUACCUCAUUGCCAUCUGGCUCUGCCCUCAACACGCCCUGAAGCUGUUCUCCCUGAGUGAUGGAGAUGCGCCUAGCUCCCAAAUGCAAUGGGAACUCUUCUGUCCUUGGCUUGACUCUGGGUGCCAUCCUACUGAGGAAAUCCCUUACUCUGUCAAUCACCAGCCACGUGUCCAAGCCCGAAAAUAUGCCUCUGGAAUCAAUAUCAAGUCUUCCAUUUCUCCAGAUUUCAGAUAUUUCUUAAACCCAUCCCUUCCUCUCUGAUCCCUAGAGGCCCCCAUCUUGCUGGCAUGACCAGCUGCUUUUCCCUCGUCACAUUGGAAAGGGЖCACUUGCACCUUGGCCCAGCAUCAGCGCCUUCCCGUCAGGAGCAGCCUCCGCCUUUAUGCUCUGGCCAGGAGAACCCGACCACUGCCCAUCCGGCAAUGCCCCACUCCCCACCAUGCCCUGUGAACGCGGGUUCUUGUCUGGUGUGCUUCUCUGUUUUCACCCCUUAGAGGCAGCCUGACCCUUUGGAUGGCAGCCCAAACUUCAAUCACCUGGGAAGACUUCCCACCUCCACAGAGGCCAAGACCUCCCUUCCCACACCAGCCCUUGUUCCCUGGCACUUUGUGCAAACAUCCGUUUGCUCAGCUGCCCUGCCUCGUGUCACUGUGAAUUUACACCAUUUAUUCCCAGGUCUCUCACCCCUUCACUGCUGUGACACUGGUGCCUGGUGAGGGCCUGAUACACAGUUUGUGACAUGAAUGAUGAAUGAAUAUGC
Sequence (SHORT NAMES ENCODING) CCCAUACUUGUCCACCUCGGGCAUGUUCAUGUCGUCGAUGAAGUAGACGAGCUUCUUAGUGCCUGGCGGCCCGUAGUUCCUCCCCGAUUUCUUCUCCAGCGGCUUCUCCAGCACCCCUAGAGAGGGCAGAGGGUCAGCUGCCCGCCUGCGCCUCCUGAGCCAGAGCCUGUUAGGUAGGGAGGGGCGCUACCUGCUUCCCCGGAGGACAGAAGGUGGGACCUGGCUGGGAUCCAAGUUUACCAAAGGCGUGUGGAGGGUACUGCACCGAUUCCUGCCUCUAAAUCACCAGUCGGUGGCCCUGCUUUGGGGm6ACAGUUACCUGCAGUGGGm6ACAUCGGGAUCCAGCUCAAAGGAGGGCACUUUAUCUGUCCAGGGCAGGAm6ACUUUUUUGUGUCAGGAUCAAUGUAGUAGUCAAAAAUCGUUCCCUGCGAGGGGAACUUGAUAGUCUUGAAUUCGUUGAUCCACCAUUUACUGAm6ACUCCACUCGAUAAUCCACAAGCUGUUGAGACACAGAAGUAAAAAUCAGGGCCCAGCUAAGCAGGAUGCUGAGAGm6ACCCUGUGUGGGUGGCCGGGCCCCCCAGGUGCAUCACCUGGUCCUGGAACAUGGCGCCACCGAAGGCCCAGAAGCAGGUGAACACGAAGUACAGCUCGUACAGCUCCCUGGGGGAGUCGGGGGGCACGGUCUUCUCCGUGAGCAGGCACUCCAGCAGGUACAGAAUCGUUUGGAUCACCGUGAUCUCCGGCACUGGCGUGAUCUUCUUGAACCCAAAGCGCAACUUGUCCAGGCACGUGGGCAGGUACUUGUCAAAGAGGAUCAUCAGGUUGGCCUUCUCCGACUGCACCUUGCGCCUCUCGAUCCAGCUGCUCACCACCCUGGGGGUGACAGGAGGCGCCGAUGACACAGCCGCUGCUCUGGGUCUGCCAGUGUCCCUGCCUUGGUCACUCCUUGGAGGUGUCCAGUUCCUGCCUUGGCCCACGCUGCCUUCGUUUCUGGCUCCCUCUUCUCUGCUCCCAUAGGGUGUCCCCCUGAGGACUCCACGAUCCUGUCUUUUUCCUGUCCCCGUGUCUCAGCAGCUCCUACCCAGGCUUCAUUUCAGUUCCCCGGACAUUGUCUUUGCCUACCCUGAAAACUCCCACACAUGGUACAGUGGGUAGGAUGGUGGUGCUACAAAAGAAUGUCCACCCAGAACCCAGAAUGUGCCCUGAUUUGGAGAAAGGGCAUUAGCAGAUGUCAUCAAGGAUCUUGAGACAAGAUCAUCCUGGAUUUAGGGUGGACCCUGAAUCCAAUGACUGUGUCCUUAUAAGCAAAUGGGAAAUUUGGACACAGACAUACAGAGAAGGCCACGUGGAGACAGAGGCGGAGAUGGGAGGGGUGUGUCCAUAAGCCAAGGGAUGCCAAGGACCGCCGAGAGCCCCCAGGAGCUGGGAGAGAGGCCUGGGACAGGUUCUCCCGCAGAGCCUCAGAGGGAACCAGCACUGCCUACUCCUUGACUUCUGGCCUCCAGCACUGGGAGAGGAUAAAUGUCUGUUGUUUGAAGCUGCCCCAUUAGUGGUCAUUGUUUCAGCAGCUGGAGAAUGCUGUAUAAGCAGGCAAGUGUUGCUGGAGAAGCCGGCACAGAGGCACCCAGGCUCAGCAGCUCCUGGCCCUGUCCCCAUAGGGAACAUUCCACUUGGUAUCCCUCUCAAACCCUGGCCACACUGUGCUGCCUGCCUCCCAGCAGAGGGUCUCACUUCCCACGCAGAGAGCAAAGAAGUGCACCAGCAUGAACUCCGGAAACUUAAUUUUCUCUGCCUAUAGACUUGCAUGCACCUGAAAACAGCCAUGCCUGCAUCCCAUGGCCAAACAUCAUUCUUGUCUCGACAAAUACUACAAAGCUUCAUUCCUCUUGUUCCAGCCCUACCCUCCAGCACUCCAAGGCAGGACUCGCCUCACUUCUGGCGCCUCCUGCUGCCUCCUCCAUACCUCAUUGCCAUCUGGCUCUGCCCUCAACACGCCCUGAAGCUGUUCUCCCUGAGUGAUGGAGAUGCGCCUAGCUCCCAAAUGCAAUGGGAACUCUUCUGUCCUUGGCUUGACUCUGGGUGCCAUCCUACUGAGGAAAUCCCUUACUCUGUCAAUCACCAGCCACGUGUCCAAGCCCGAAAAUAUGCCUCUGGAAUCAAUAUCAAGUCUUCCAUUUCUCCAGAUUUCAGAUAUUUCUUAAACCCAUCCCUUCCUCUCUGAUCCCUAGAGGCCCCCAUCUUGCUGGCAUGACCAGCUGCUUUUCCCUCGUCACAUUGGAAAGGGm6ACACUUGCACCUUGGCCCAGCAUCAGCGCCUUCCCGUCAGGAGCAGCCUCCGCCUUUAUGCUCUGGCCAGGAGAACCCGACCACUGCCCAUCCGGCAAUGCCCCACUCCCCACCAUGCCCUGUGAACGCGGGUUCUUGUCUGGUGUGCUUCUCUGUUUUCACCCCUUAGAGGCAGCCUGACCCUUUGGAUGGCAGCCCAAACUUCAAUCACCUGGGAAGACUUCCCACCUCCACAGAGGCCAAGACCUCCCUUCCCACACCAGCCCUUGUUCCCUGGCACUUUGUGCAAACAUCCGUUUGCUCAGCUGCCCUGCCUCGUGUCACUGUGAAUUUACACCAUUUAUUCCCAGGUCUCUCACCCCUUCACUGCUGUGACACUGGUGCCUGGUGAGGGCCUGAUACACAGUUUGUGACAUGAAUGAUGAAUGAAUAUGC
Sequence (MODOMICS CODE ENCODING) CCCAUACUUGUCCACCUCGGGCAUGUUCAUGUCGUCGAUGAAGUAGACGAGCUUCUUAGUGCCUGGCGGCCCGUAGUUCCUCCCCGAUUUCUUCUCCAGCGGCUUCUCCAGCACCCCUAGAGAGGGCAGAGGGUCAGCUGCCCGCCUGCGCCUCCUGAGCCAGAGCCUGUUAGGUAGGGAGGGGCGCUACCUGCUUCCCCGGAGGACAGAAGGUGGGACCUGGCUGGGAUCCAAGUUUACCAAAGGCGUGUGGAGGGUACUGCACCGAUUCCUGCCUCUAAAUCACCAGUCGGUGGCCCUGCUUUGGGG2000000006ACAGUUACCUGCAGUGGG2000000006ACAUCGGGAUCCAGCUCAAAGGAGGGCACUUUAUCUGUCCAGGGCAGGA2000000006ACUUUUUUGUGUCAGGAUCAAUGUAGUAGUCAAAAAUCGUUCCCUGCGAGGGGAACUUGAUAGUCUUGAAUUCGUUGAUCCACCAUUUACUGA2000000006ACUCCACUCGAUAAUCCACAAGCUGUUGAGACACAGAAGUAAAAAUCAGGGCCCAGCUAAGCAGGAUGCUGAGAG2000000006ACCCUGUGUGGGUGGCCGGGCCCCCCAGGUGCAUCACCUGGUCCUGGAACAUGGCGCCACCGAAGGCCCAGAAGCAGGUGAACACGAAGUACAGCUCGUACAGCUCCCUGGGGGAGUCGGGGGGCACGGUCUUCUCCGUGAGCAGGCACUCCAGCAGGUACAGAAUCGUUUGGAUCACCGUGAUCUCCGGCACUGGCGUGAUCUUCUUGAACCCAAAGCGCAACUUGUCCAGGCACGUGGGCAGGUACUUGUCAAAGAGGAUCAUCAGGUUGGCCUUCUCCGACUGCACCUUGCGCCUCUCGAUCCAGCUGCUCACCACCCUGGGGGUGACAGGAGGCGCCGAUGACACAGCCGCUGCUCUGGGUCUGCCAGUGUCCCUGCCUUGGUCACUCCUUGGAGGUGUCCAGUUCCUGCCUUGGCCCACGCUGCCUUCGUUUCUGGCUCCCUCUUCUCUGCUCCCAUAGGGUGUCCCCCUGAGGACUCCACGAUCCUGUCUUUUUCCUGUCCCCGUGUCUCAGCAGCUCCUACCCAGGCUUCAUUUCAGUUCCCCGGACAUUGUCUUUGCCUACCCUGAAAACUCCCACACAUGGUACAGUGGGUAGGAUGGUGGUGCUACAAAAGAAUGUCCACCCAGAACCCAGAAUGUGCCCUGAUUUGGAGAAAGGGCAUUAGCAGAUGUCAUCAAGGAUCUUGAGACAAGAUCAUCCUGGAUUUAGGGUGGACCCUGAAUCCAAUGACUGUGUCCUUAUAAGCAAAUGGGAAAUUUGGACACAGACAUACAGAGAAGGCCACGUGGAGACAGAGGCGGAGAUGGGAGGGGUGUGUCCAUAAGCCAAGGGAUGCCAAGGACCGCCGAGAGCCCCCAGGAGCUGGGAGAGAGGCCUGGGACAGGUUCUCCCGCAGAGCCUCAGAGGGAACCAGCACUGCCUACUCCUUGACUUCUGGCCUCCAGCACUGGGAGAGGAUAAAUGUCUGUUGUUUGAAGCUGCCCCAUUAGUGGUCAUUGUUUCAGCAGCUGGAGAAUGCUGUAUAAGCAGGCAAGUGUUGCUGGAGAAGCCGGCACAGAGGCACCCAGGCUCAGCAGCUCCUGGCCCUGUCCCCAUAGGGAACAUUCCACUUGGUAUCCCUCUCAAACCCUGGCCACACUGUGCUGCCUGCCUCCCAGCAGAGGGUCUCACUUCCCACGCAGAGAGCAAAGAAGUGCACCAGCAUGAACUCCGGAAACUUAAUUUUCUCUGCCUAUAGACUUGCAUGCACCUGAAAACAGCCAUGCCUGCAUCCCAUGGCCAAACAUCAUUCUUGUCUCGACAAAUACUACAAAGCUUCAUUCCUCUUGUUCCAGCCCUACCCUCCAGCACUCCAAGGCAGGACUCGCCUCACUUCUGGCGCCUCCUGCUGCCUCCUCCAUACCUCAUUGCCAUCUGGCUCUGCCCUCAACACGCCCUGAAGCUGUUCUCCCUGAGUGAUGGAGAUGCGCCUAGCUCCCAAAUGCAAUGGGAACUCUUCUGUCCUUGGCUUGACUCUGGGUGCCAUCCUACUGAGGAAAUCCCUUACUCUGUCAAUCACCAGCCACGUGUCCAAGCCCGAAAAUAUGCCUCUGGAAUCAAUAUCAAGUCUUCCAUUUCUCCAGAUUUCAGAUAUUUCUUAAACCCAUCCCUUCCUCUCUGAUCCCUAGAGGCCCCCAUCUUGCUGGCAUGACCAGCUGCUUUUCCCUCGUCACAUUGGAAAGGG2000000006ACACUUGCACCUUGGCCCAGCAUCAGCGCCUUCCCGUCAGGAGCAGCCUCCGCCUUUAUGCUCUGGCCAGGAGAACCCGACCACUGCCCAUCCGGCAAUGCCCCACUCCCCACCAUGCCCUGUGAACGCGGGUUCUUGUCUGGUGUGCUUCUCUGUUUUCACCCCUUAGAGGCAGCCUGACCCUUUGGAUGGCAGCCCAAACUUCAAUCACCUGGGAAGACUUCCCACCUCCACAGAGGCCAAGACCUCCCUUCCCACACCAGCCCUUGUUCCCUGGCACUUUGUGCAAACAUCCGUUUGCUCAGCUGCCCUGCCUCGUGUCACUGUGAAUUUACACCAUUUAUUCCCAGGUCUCUCACCCCUUCACUGCUGUGACACUGGUGCCUGGUGAGGGCCUGAUACACAGUUUGUGACAUGAAUGAUGAAUGAAUAUGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 310 328 377 470 545 2276
Modification Positions m6A m6A m6A m6A m6A m6A
Genomic Coordinates 17:78485952:+ 17:78485970:+ 17:78486019:+ 17:78486112:+ 17:78486187:+ 17:78490191:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6UuHp6YApVKv
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
3TeAZFYFxgvp
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
aJksAshEgQ8U
D6ncpa2PPWj3
jNkxUQNx8GRd
Lny8GcCeVGc9
NjZ8bGGJsNSR
aJksAshEgQ8U
Lny8GcCeVGc9
3TeAZFYFxgvp
NjZ8bGGJsNSR
Q36pf44ZRvxu
aJksAshEgQ8U
D6ncpa2PPWj3
3TeAZFYFxgvp
jNkxUQNx8GRd
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
D6ncpa2PPWj3