Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000689751
Gene ID: ENSG00000233223
Gene Name: None
Sequence (UNICHARACTER ENCODING) CGCUCUUUCUGACGCUACCCACCCUCACUCUAGUGGCGUAAAAUAAGUCUCAGUCAGGGACCACGUUUUGGACGCGCUGUUGGAAUUGUAAAGCUUGCCGAAGCUGCACGCCUGCGCGGUUAGACCUCCCACGCCUUUGUUGACGCUUCCAGUUUGGAAGCCAGAUUUACACCCCUGCCUUUCUCCGCUCCPCCUGCUGGGCGCCAUCUUGUCUUCUCCUAGCACACUUUGUAUUGUUCGAAGUUGAGAGAGAAGGAGCCGGAGUCUCCGAGGUGGCGUUGGGUGGGGGCGCUACUAGCUCCCGUUCUCUCAGCGUCUCUAGAGGGAAGGGCGCCGGUGGGAGCAGGAGAGUCUGCACCGGGCAGGCCUCCUUAGGUGCCGGGUUGCGCGCAGGGCCCUGUGCUUGUCUCGCCUCCGGUUGGCUCAGGCCUCGGAGCAUGAGUGCGCCGGCAACUGCUGGGCCCGGGЖCAGUGAAGCAGAGGAGGAGGUGGGGGAGGCGAGCCCAGGUCGGGGAAGGGCAGCACCUGAAUCACCCUUGGGGCCCAGACCCCCAAGAGUCUCCGGGGAGCCGAGGCCUGGCGAGGCAGUCCCGGGAUUCGCCCCCUCCCCGCUGGCCCGAGGGCGCACCACGUGCUGGGCAGAGЖCUUCGGCGAGGCCGAGUGGACCCUGCAGCGCUGCUUGGGAAAGGGCACCUUGGЖCUACCUGGUGGGGGCGUUGUGCUUCGUUACCGACCGCCGGGACGCCAACCCACGGUGCCCACCCGUGCGUCAUUCCGCUGUGGAUCAGCCCUUUGGCGGCCCCCCUCCAAAGUCUACAAGGUCACACGGAUGUCUGCAGGCAGAGGUGGGGCUGCUGGGGCCCUGCCAGGUGGGAUAGGAGCAUGCCAGGUGCUGCGAGGGUUUAAUCGGGCUCUUCUGCUGGCCUUGAAUAUGGUGGACAGGACAGGЖCAUUCUCAUUGCUCAGGAGCCACUGGCGCUGCCUUUGGGAAUGAAGUUCCACAGCCCCCCACUCAUUGCUUUGGCUGUCUGCUGCAUUUGAAЖCUGUACGAGGGUCAGGAAGAAGGCUGCGGGGAUGAAUGGCUCUACCGGCUUGCCACGGAUGGGGAACUGGAGCAGCCAGUGGCCCCAAGAGGAGGAAGGAAGGGAGGCACGGCAGACCCAACACCAGCUGUGCCAGGCUUUGGGGGGUGAACCCAUGAGGCAUCGUCACACACUGЖCAUUUUCAPCCCUCCUCAGCAGCUGCUUCCGGCUCCCUGAGЖCCCAGCCAUGGAAGGCAUAGAAAGGCAUGUGACAAGAAЖCUCAUGGCUUUUAAUCCUGGCAGGACAAGGAAAACCCCGUCAAAGAUUUGCAUAAAUUUUGCUGCUCUCCUGCUGGGGGGGGGGGGGGGGCAGUUCGUCACAUUUAAUAAAAUUCUCUCCCUCCCUUCUCCCGAC
Sequence (SHORT NAMES ENCODING) CGCUCUUUCUGACGCUACCCACCCUCACUCUAGUGGCGUAAAAUAAGUCUCAGUCAGGGACCACGUUUUGGACGCGCUGUUGGAAUUGUAAAGCUUGCCGAAGCUGCACGCCUGCGCGGUUAGACCUCCCACGCCUUUGUUGACGCUUCCAGUUUGGAAGCCAGAUUUACACCCCUGCCUUUCUCCGCUCCYCCUGCUGGGCGCCAUCUUGUCUUCUCCUAGCACACUUUGUAUUGUUCGAAGUUGAGAGAGAAGGAGCCGGAGUCUCCGAGGUGGCGUUGGGUGGGGGCGCUACUAGCUCCCGUUCUCUCAGCGUCUCUAGAGGGAAGGGCGCCGGUGGGAGCAGGAGAGUCUGCACCGGGCAGGCCUCCUUAGGUGCCGGGUUGCGCGCAGGGCCCUGUGCUUGUCUCGCCUCCGGUUGGCUCAGGCCUCGGAGCAUGAGUGCGCCGGCAACUGCUGGGCCCGGGm6ACAGUGAAGCAGAGGAGGAGGUGGGGGAGGCGAGCCCAGGUCGGGGAAGGGCAGCACCUGAAUCACCCUUGGGGCCCAGACCCCCAAGAGUCUCCGGGGAGCCGAGGCCUGGCGAGGCAGUCCCGGGAUUCGCCCCCUCCCCGCUGGCCCGAGGGCGCACCACGUGCUGGGCAGAGm6ACUUCGGCGAGGCCGAGUGGACCCUGCAGCGCUGCUUGGGAAAGGGCACCUUGGm6ACUACCUGGUGGGGGCGUUGUGCUUCGUUACCGACCGCCGGGACGCCAACCCACGGUGCCCACCCGUGCGUCAUUCCGCUGUGGAUCAGCCCUUUGGCGGCCCCCCUCCAAAGUCUACAAGGUCACACGGAUGUCUGCAGGCAGAGGUGGGGCUGCUGGGGCCCUGCCAGGUGGGAUAGGAGCAUGCCAGGUGCUGCGAGGGUUUAAUCGGGCUCUUCUGCUGGCCUUGAAUAUGGUGGACAGGACAGGm6ACAUUCUCAUUGCUCAGGAGCCACUGGCGCUGCCUUUGGGAAUGAAGUUCCACAGCCCCCCACUCAUUGCUUUGGCUGUCUGCUGCAUUUGAAm6ACUGUACGAGGGUCAGGAAGAAGGCUGCGGGGAUGAAUGGCUCUACCGGCUUGCCACGGAUGGGGAACUGGAGCAGCCAGUGGCCCCAAGAGGAGGAAGGAAGGGAGGCACGGCAGACCCAACACCAGCUGUGCCAGGCUUUGGGGGGUGAACCCAUGAGGCAUCGUCACACACUGm6ACAUUUUCAYCCCUCCUCAGCAGCUGCUUCCGGCUCCCUGAGm6ACCCAGCCAUGGAAGGCAUAGAAAGGCAUGUGACAAGAAm6ACUCAUGGCUUUUAAUCCUGGCAGGACAAGGAAAACCCCGUCAAAGAUUUGCAUAAAUUUUGCUGCUCUCCUGCUGGGGGGGGGGGGGGGGCAGUUCGUCACAUUUAAUAAAAUUCUCUCCCUCCCUUCUCCCGAC
Sequence (MODOMICS CODE ENCODING) CGCUCUUUCUGACGCUACCCACCCUCACUCUAGUGGCGUAAAAUAAGUCUCAGUCAGGGACCACGUUUUGGACGCGCUGUUGGAAUUGUAAAGCUUGCCGAAGCUGCACGCCUGCGCGGUUAGACCUCCCACGCCUUUGUUGACGCUUCCAGUUUGGAAGCCAGAUUUACACCCCUGCCUUUCUCCGCUCC2000000009UCCUGCUGGGCGCCAUCUUGUCUUCUCCUAGCACACUUUGUAUUGUUCGAAGUUGAGAGAGAAGGAGCCGGAGUCUCCGAGGUGGCGUUGGGUGGGGGCGCUACUAGCUCCCGUUCUCUCAGCGUCUCUAGAGGGAAGGGCGCCGGUGGGAGCAGGAGAGUCUGCACCGGGCAGGCCUCCUUAGGUGCCGGGUUGCGCGCAGGGCCCUGUGCUUGUCUCGCCUCCGGUUGGCUCAGGCCUCGGAGCAUGAGUGCGCCGGCAACUGCUGGGCCCGGG2000000006ACAGUGAAGCAGAGGAGGAGGUGGGGGAGGCGAGCCCAGGUCGGGGAAGGGCAGCACCUGAAUCACCCUUGGGGCCCAGACCCCCAAGAGUCUCCGGGGAGCCGAGGCCUGGCGAGGCAGUCCCGGGAUUCGCCCCCUCCCCGCUGGCCCGAGGGCGCACCACGUGCUGGGCAGAG2000000006ACUUCGGCGAGGCCGAGUGGACCCUGCAGCGCUGCUUGGGAAAGGGCACCUUGG2000000006ACUACCUGGUGGGGGCGUUGUGCUUCGUUACCGACCGCCGGGACGCCAACCCACGGUGCCCACCCGUGCGUCAUUCCGCUGUGGAUCAGCCCUUUGGCGGCCCCCCUCCAAAGUCUACAAGGUCACACGGAUGUCUGCAGGCAGAGGUGGGGCUGCUGGGGCCCUGCCAGGUGGGAUAGGAGCAUGCCAGGUGCUGCGAGGGUUUAAUCGGGCUCUUCUGCUGGCCUUGAAUAUGGUGGACAGGACAGG2000000006ACAUUCUCAUUGCUCAGGAGCCACUGGCGCUGCCUUUGGGAAUGAAGUUCCACAGCCCCCCACUCAUUGCUUUGGCUGUCUGCUGCAUUUGAA2000000006ACUGUACGAGGGUCAGGAAGAAGGCUGCGGGGAUGAAUGGCUCUACCGGCUUGCCACGGAUGGGGAACUGGAGCAGCCAGUGGCCCCAAGAGGAGGAAGGAAGGGAGGCACGGCAGACCCAACACCAGCUGUGCCAGGCUUUGGGGGGUGAACCCAUGAGGCAUCGUCACACACUG2000000006ACAUUUUCA2000000009UCCCUCCUCAGCAGCUGCUUCCGGCUCCCUGAG2000000006ACCCAGCCAUGGAAGGCAUAGAAAGGCAUGUGACAAGAA2000000006ACUCAUGGCUUUUAAUCCUGGCAGGACAAGGAAAACCCCGUCAAAGAUUUGCAUAAAUUUUGCUGCUCUCCUGCUGGGGGGGGGGGGGGGGCAGUUCGUCACAUUUAAUAAAAUUCUCUCCCUCCCUUCUCCCGAC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 192 468 644 698 947 1040 1216 1225 1258 1297
Modification Positions Y m6A m6A m6A m6A m6A m6A Y m6A m6A
Genomic Coordinates 17:7583551:- 17:7583275:- 17:7583099:- 17:7583045:- 17:7582452:- 17:7582359:- 17:7582183:- 17:7582174:- 17:7582141:- 17:7582102:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs dknfVe6BK8aP
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
Lny8GcCeVGc9
dknfVe6BK8aP
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8