General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000395525
Gene ID:	ENSG00000128487
Gene Name:	SPECC1
Sequence (UNICHARACTER ENCODING)	CGGACCCGCCGGACGCAACCGCCUCGCCAGCCGGAGCCAGCGCGAGCUCGGCACGGUGGACACCCGGUCCGAGGCCGGCAAGCCGGCUGGUGCCCGAGUCGGCCAAGCAUGGGCAACCACUCAGGACGGCCCGAGGAUCCGGAACCAGGGGCCUUUACAACAACUAAACGGACAGGCAUUCCAGCCCCACGGGAAUUUUCAGUAACUGUCUCAAGAGAGAGGUCUGUGCCACGUGGUCCCUCCAACCCCAGGAAAUCAGUGUCCAGUCCAACUUCUUCCAACACUCCCACUCCUACGAAACACCUGAGGACCCCUUCCACAAAGCCCAAGCAAGAGAAUGAAGGUGGAGAAAAGGCUGCGCUUGAGUCCCAAGUUCGGGAACUUUUGGCAGAAGCCAAAGCAAAAGAUAGUGAAAUUAACAGGCUUCGAAGUGAACUAAAGAAAUACAAAGAGAAAAGGЖCUCUGAACGCUGAGGGGACUGAUGCUUUGGGCCCAAAUGUCGAUGGAACAUCAGUCUCCCCAGGUGACACGGAACCUAUGAUAAGAGCUCUUGAGGAGAAGAACAAGAACUUUCAGAAAGAGCUUUCCGAUCUAGAGGAAGAAAACCGGGUCCUGAAGGAGAAACUGAUCUAUCUUGAGCACUCCCCAAAUUCAGAAGGGGCAGCAAGUCACACUGGCGACAGCAGCUGCCCAACAUCCAUAACUCAAGAGUCAAGCUUCGGAAGCCCAACUGGAAAUCAGAUGUCCAGUGЖCAUUGAUGAGUAUAAAAAAAACAUACAUGGAAAUGCAUUACGGЖCAUCAGGCUCCUCAAGUAGCGAUGUUACCAAAGCUUCUUUGUCGCCAGAUGCUUCCGACUUUGAGCACAUUACAGCAGAGACACCCUCAAGGCCCCUGUCCUCCACCAGUAACCCCUUUAAGAGUUCAAAGUGUUCUACUGCUGGGAGUUCCCCAAACAGCGUAAGUGAAUUGUCCCUGGCUUCCCUCACAGAGAAGAUACЖAAAGAUGGAAGAAAACCACCAUAGCACUGCAGAAGAACUACAGGCUACUCUACAAGAAUUAUCAGACCAGCAACAAAUGGUACAGGAAUUGACAGCUGAAAAUGAGAAGCUGGUGGAUGAAAAGACGAUUUUAGAGACAUCCUUUCAUCAGCAUCGAGAGAGGGCAGAGCAGCUAAGUCAAGAAAAUGAGAAGCUGAUGAAUCUUUUACAAGAGCGAGUAAAGAAUGAAGAGCCCACCACUCAGGAAGGAAAAAUUAUUGAЖCUGGAGCAGAAGUGCACAGGUAUUCUUGAACAGGGCCGCUUUGAAAGAGAGAAGCUACUCAACAUUCAGCAGCAGUUGACCUGUAGCUUGCGGAAGGUUGAGGAAGAAAACCAAGGAGCUUUAGAAAUGAUUAAACGUCUGAAGGAAGAAAAUGAAAAЖCUGAAUGAGUUUCUAGAЖCUGGAACGGCAUAAUAAUAACAUGAUGGCCAAAACUUUGGAAGAGUGUAGAGUUACCUUGGAAGGGCUAAAAAUGGAGAAUGGAUCUUUGAAGUCUCAUUUGCAGGGUGAGAAGCAGAAAGCCACAGAGGCCAGUGCUGUGGAGCAGACGGCAGAGAGCUGCGAAGUUCAAGAAAUGUUGAAAGUAGCCCGAGCAGAGAAAGAUCUACUGGAЖCUGUCUUGCAAUGAGCUCAGACAAGAAUUACUAAAGGCAAACGGUGAAAUUAAACAUGUUUCCAGUCUGCUGGCCAAGGUGGAAAAGGAUUAUUCAUACCUGAAGGAGAUAUGUGAUCACCAAGCCGAACAGCUGAGCAGAACCAGCCUAAAGCUGCAAGAAAAAGCAUCAGAGAGUGAUGCAGAGAUCAAAGACAUGAAAGAAACCAUAUUUGAAUUGGAAGAUCAGGUGGAACAGCACCGGGCUGUCAAGUUACACAAUAAUCAACUCAUCAGUGAGCUAGAAAGUAGUGUGAUCAAGCUGGAGGAACAGAAGUCAGACCUGGAGAGGCAGCUGAAGACUCUGACCAAGCAGAUGAAGGAGGAGЖCCGAGGAAUGGAGGCGGUUCCAGGCGGAUCUGCAGЖCCGCAGUGGUGGUGGCCAAUGACAUCAAGUGUGAGGCCCAGCAGGAGCUGCGCACCGUGAAGAGGAAACUGCUGGAGGAGGAGGAGAAGAAUGCCCGGUUGCAGAAGGAGCUGGGGGAUGUGCAGGGCCACGGCAGGGUGGUCACCAGCAGAGCCGCCCCUCCCUCCCUGGGCUCUGUCAGCUAGCAGAGCAUUUGGUGGAAGAAAGACAGCCCAGCUCUUGCCAUGAUUGGGAGCCGCAGCCAUCUCUAGAUGAAAGGGGGAAUGUGUAGAGGAGAAAUUGCCUCUPUAUAAAGAGCCCAGUUGUCUCCUUGUGЖCAUUCUCUGUUUCUCAGAGUCAUUGCCGUCGAGUCUCUGCUUUUUGUCCACAUUUUGGGAUCAGCUUACUGCAUGAUCAAAGAUGAUGUUUCCCUCUUUUUACUUUUCCUCAGAAGAUUGAGCUGUCUUUUAUUUGGAGAAUAAAAUGAAGUUCUGAAAAAAACAAA
Sequence (SHORT NAMES ENCODING)	CGGACCCGCCGGACGCAACCGCCUCGCCAGCCGGAGCCAGCGCGAGCUCGGCACGGUGGACACCCGGUCCGAGGCCGGCAAGCCGGCUGGUGCCCGAGUCGGCCAAGCAUGGGCAACCACUCAGGACGGCCCGAGGAUCCGGAACCAGGGGCCUUUACAACAACUAAACGGACAGGCAUUCCAGCCCCACGGGAAUUUUCAGUAACUGUCUCAAGAGAGAGGUCUGUGCCACGUGGUCCCUCCAACCCCAGGAAAUCAGUGUCCAGUCCAACUUCUUCCAACACUCCCACUCCUACGAAACACCUGAGGACCCCUUCCACAAAGCCCAAGCAAGAGAAUGAAGGUGGAGAAAAGGCUGCGCUUGAGUCCCAAGUUCGGGAACUUUUGGCAGAAGCCAAAGCAAAAGAUAGUGAAAUUAACAGGCUUCGAAGUGAACUAAAGAAAUACAAAGAGAAAAGGm6ACUCUGAACGCUGAGGGGACUGAUGCUUUGGGCCCAAAUGUCGAUGGAACAUCAGUCUCCCCAGGUGACACGGAACCUAUGAUAAGAGCUCUUGAGGAGAAGAACAAGAACUUUCAGAAAGAGCUUUCCGAUCUAGAGGAAGAAAACCGGGUCCUGAAGGAGAAACUGAUCUAUCUUGAGCACUCCCCAAAUUCAGAAGGGGCAGCAAGUCACACUGGCGACAGCAGCUGCCCAACAUCCAUAACUCAAGAGUCAAGCUUCGGAAGCCCAACUGGAAAUCAGAUGUCCAGUGm6ACAUUGAUGAGUAUAAAAAAAACAUACAUGGAAAUGCAUUACGGm6ACAUCAGGCUCCUCAAGUAGCGAUGUUACCAAAGCUUCUUUGUCGCCAGAUGCUUCCGACUUUGAGCACAUUACAGCAGAGACACCCUCAAGGCCCCUGUCCUCCACCAGUAACCCCUUUAAGAGUUCAAAGUGUUCUACUGCUGGGAGUUCCCCAAACAGCGUAAGUGAAUUGUCCCUGGCUUCCCUCACAGAGAAGAUACm6AAAAGAUGGAAGAAAACCACCAUAGCACUGCAGAAGAACUACAGGCUACUCUACAAGAAUUAUCAGACCAGCAACAAAUGGUACAGGAAUUGACAGCUGAAAAUGAGAAGCUGGUGGAUGAAAAGACGAUUUUAGAGACAUCCUUUCAUCAGCAUCGAGAGAGGGCAGAGCAGCUAAGUCAAGAAAAUGAGAAGCUGAUGAAUCUUUUACAAGAGCGAGUAAAGAAUGAAGAGCCCACCACUCAGGAAGGAAAAAUUAUUGAm6ACUGGAGCAGAAGUGCACAGGUAUUCUUGAACAGGGCCGCUUUGAAAGAGAGAAGCUACUCAACAUUCAGCAGCAGUUGACCUGUAGCUUGCGGAAGGUUGAGGAAGAAAACCAAGGAGCUUUAGAAAUGAUUAAACGUCUGAAGGAAGAAAAUGAAAAm6ACUGAAUGAGUUUCUAGAm6ACUGGAACGGCAUAAUAAUAACAUGAUGGCCAAAACUUUGGAAGAGUGUAGAGUUACCUUGGAAGGGCUAAAAAUGGAGAAUGGAUCUUUGAAGUCUCAUUUGCAGGGUGAGAAGCAGAAAGCCACAGAGGCCAGUGCUGUGGAGCAGACGGCAGAGAGCUGCGAAGUUCAAGAAAUGUUGAAAGUAGCCCGAGCAGAGAAAGAUCUACUGGAm6ACUGUCUUGCAAUGAGCUCAGACAAGAAUUACUAAAGGCAAACGGUGAAAUUAAACAUGUUUCCAGUCUGCUGGCCAAGGUGGAAAAGGAUUAUUCAUACCUGAAGGAGAUAUGUGAUCACCAAGCCGAACAGCUGAGCAGAACCAGCCUAAAGCUGCAAGAAAAAGCAUCAGAGAGUGAUGCAGAGAUCAAAGACAUGAAAGAAACCAUAUUUGAAUUGGAAGAUCAGGUGGAACAGCACCGGGCUGUCAAGUUACACAAUAAUCAACUCAUCAGUGAGCUAGAAAGUAGUGUGAUCAAGCUGGAGGAACAGAAGUCAGACCUGGAGAGGCAGCUGAAGACUCUGACCAAGCAGAUGAAGGAGGAGm6ACCGAGGAAUGGAGGCGGUUCCAGGCGGAUCUGCAGm6ACCGCAGUGGUGGUGGCCAAUGACAUCAAGUGUGAGGCCCAGCAGGAGCUGCGCACCGUGAAGAGGAAACUGCUGGAGGAGGAGGAGAAGAAUGCCCGGUUGCAGAAGGAGCUGGGGGAUGUGCAGGGCCACGGCAGGGUGGUCACCAGCAGAGCCGCCCCUCCCUCCCUGGGCUCUGUCAGCUAGCAGAGCAUUUGGUGGAAGAAAGACAGCCCAGCUCUUGCCAUGAUUGGGAGCCGCAGCCAUCUCUAGAUGAAAGGGGGAAUGUGUAGAGGAGAAAUUGCCUCUYUAUAAAGAGCCCAGUUGUCUCCUUGUGm6ACAUUCUCUGUUUCUCAGAGUCAUUGCCGUCGAGUCUCUGCUUUUUGUCCACAUUUUGGGAUCAGCUUACUGCAUGAUCAAAGAUGAUGUUUCCCUCUUUUUACUUUUCCUCAGAAGAUUGAGCUGUCUUUUAUUUGGAGAAUAAAAUGAAGUUCUGAAAAAAACAAA
Sequence (MODOMICS CODE ENCODING)	CGGACCCGCCGGACGCAACCGCCUCGCCAGCCGGAGCCAGCGCGAGCUCGGCACGGUGGACACCCGGUCCGAGGCCGGCAAGCCGGCUGGUGCCCGAGUCGGCCAAGCAUGGGCAACCACUCAGGACGGCCCGAGGAUCCGGAACCAGGGGCCUUUACAACAACUAAACGGACAGGCAUUCCAGCCCCACGGGAAUUUUCAGUAACUGUCUCAAGAGAGAGGUCUGUGCCACGUGGUCCCUCCAACCCCAGGAAAUCAGUGUCCAGUCCAACUUCUUCCAACACUCCCACUCCUACGAAACACCUGAGGACCCCUUCCACAAAGCCCAAGCAAGAGAAUGAAGGUGGAGAAAAGGCUGCGCUUGAGUCCCAAGUUCGGGAACUUUUGGCAGAAGCCAAAGCAAAAGAUAGUGAAAUUAACAGGCUUCGAAGUGAACUAAAGAAAUACAAAGAGAAAAGG2000000006ACUCUGAACGCUGAGGGGACUGAUGCUUUGGGCCCAAAUGUCGAUGGAACAUCAGUCUCCCCAGGUGACACGGAACCUAUGAUAAGAGCUCUUGAGGAGAAGAACAAGAACUUUCAGAAAGAGCUUUCCGAUCUAGAGGAAGAAAACCGGGUCCUGAAGGAGAAACUGAUCUAUCUUGAGCACUCCCCAAAUUCAGAAGGGGCAGCAAGUCACACUGGCGACAGCAGCUGCCCAACAUCCAUAACUCAAGAGUCAAGCUUCGGAAGCCCAACUGGAAAUCAGAUGUCCAGUG2000000006ACAUUGAUGAGUAUAAAAAAAACAUACAUGGAAAUGCAUUACGG2000000006ACAUCAGGCUCCUCAAGUAGCGAUGUUACCAAAGCUUCUUUGUCGCCAGAUGCUUCCGACUUUGAGCACAUUACAGCAGAGACACCCUCAAGGCCCCUGUCCUCCACCAGUAACCCCUUUAAGAGUUCAAAGUGUUCUACUGCUGGGAGUUCCCCAAACAGCGUAAGUGAAUUGUCCCUGGCUUCCCUCACAGAGAAGAUAC2000000006AAAAGAUGGAAGAAAACCACCAUAGCACUGCAGAAGAACUACAGGCUACUCUACAAGAAUUAUCAGACCAGCAACAAAUGGUACAGGAAUUGACAGCUGAAAAUGAGAAGCUGGUGGAUGAAAAGACGAUUUUAGAGACAUCCUUUCAUCAGCAUCGAGAGAGGGCAGAGCAGCUAAGUCAAGAAAAUGAGAAGCUGAUGAAUCUUUUACAAGAGCGAGUAAAGAAUGAAGAGCCCACCACUCAGGAAGGAAAAAUUAUUGA2000000006ACUGGAGCAGAAGUGCACAGGUAUUCUUGAACAGGGCCGCUUUGAAAGAGAGAAGCUACUCAACAUUCAGCAGCAGUUGACCUGUAGCUUGCGGAAGGUUGAGGAAGAAAACCAAGGAGCUUUAGAAAUGAUUAAACGUCUGAAGGAAGAAAAUGAAAA2000000006ACUGAAUGAGUUUCUAGA2000000006ACUGGAACGGCAUAAUAAUAACAUGAUGGCCAAAACUUUGGAAGAGUGUAGAGUUACCUUGGAAGGGCUAAAAAUGGAGAAUGGAUCUUUGAAGUCUCAUUUGCAGGGUGAGAAGCAGAAAGCCACAGAGGCCAGUGCUGUGGAGCAGACGGCAGAGAGCUGCGAAGUUCAAGAAAUGUUGAAAGUAGCCCGAGCAGAGAAAGAUCUACUGGA2000000006ACUGUCUUGCAAUGAGCUCAGACAAGAAUUACUAAAGGCAAACGGUGAAAUUAAACAUGUUUCCAGUCUGCUGGCCAAGGUGGAAAAGGAUUAUUCAUACCUGAAGGAGAUAUGUGAUCACCAAGCCGAACAGCUGAGCAGAACCAGCCUAAAGCUGCAAGAAAAAGCAUCAGAGAGUGAUGCAGAGAUCAAAGACAUGAAAGAAACCAUAUUUGAAUUGGAAGAUCAGGUGGAACAGCACCGGGCUGUCAAGUUACACAAUAAUCAACUCAUCAGUGAGCUAGAAAGUAGUGUGAUCAAGCUGGAGGAACAGAAGUCAGACCUGGAGAGGCAGCUGAAGACUCUGACCAAGCAGAUGAAGGAGGAG2000000006ACCGAGGAAUGGAGGCGGUUCCAGGCGGAUCUGCAG2000000006ACCGCAGUGGUGGUGGCCAAUGACAUCAAGUGUGAGGCCCAGCAGGAGCUGCGCACCGUGAAGAGGAAACUGCUGGAGGAGGAGGAGAAGAAUGCCCGGUUGCAGAAGGAGCUGGGGGAUGUGCAGGGCCACGGCAGGGUGGUCACCAGCAGAGCCGCCCCUCCCUCCCUGGGCUCUGUCAGCUAGCAGAGCAUUUGGUGGAAGAAAGACAGCCCAGCUCUUGCCAUGAUUGGGAGCCGCAGCCAUCUCUAGAUGAAAGGGGGAAUGUGUAGAGGAGAAAUUGCCUCU2000000009UUAUAAAGAGCCCAGUUGUCUCCUUGUG2000000006ACAUUCUCUGUUUCUCAGAGUCAUUGCCGUCGAGUCUCUGCUUUUUGUCCACAUUUUGGGAUCAGCUUACUGCAUGAUCAAAGAUGAUGUUUCCCUCUUUUUACUUUUCCUCAGAAGAUUGAGCUGUCUUUUAUUUGGAGAAUAAAAUGAAGUUCUGAAAAAAACAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	460	752	796	998	1260	1419	1437	1650	2017	2053	2341	2369
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	17:20204644:+	17:20204936:+	17:20204980:+	17:20205182:+	17:20205444:+	17:20205603:+	17:20205621:+	17:20205834:+	17:20232206:+	17:20232242:+	17:20236984:+	17:20237012:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 Lny8GcCeVGc9	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd VL7zkHvkfkoB WdHxkJGRmFxn	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Yfn77uLS5tv8