General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000352886
Gene ID:	ENSG00000176974
Gene Name:	SHMT1
Sequence (UNICHARACTER ENCODING)	CGGGGGCGGGGCCAAGCCCAAGCCUGGCGCGCAGAGUGCACCUUCCUGAGCUCGAGCGGUCCAGCGCCAAGUUCGGGGUUUGGGGUUGGAGCGGCUGGUCACGUGGCUGGCCCGCGGCGGUGCGCGGGGCGUUGGGUCAGCGGGUCUGGGACUGGUGGCACCGGCGGCGGCGUAGGACGGAGGCGUCGCUAGGCAGCUUCGAACCAGUGCAAUGACGAUGCCAGUCAACGGGGCCCACAAGGAUGCUGACCUGUGGUCCUCACAUGACAAGAUGCUGGCACAACCCCUCAAAGACAGUGAUGUUGAGGUUUACAACAUCAUUAAGAAGGAGAGUAACCGGCAGAGGGUUGGAUUGGAGCUGAUUGCCUCGGAGAAUUUCGCCAGCCGAGCAGUUUUGGAGGCCCUAGGCUCUUGCUUAAAUAACAAAUACUCUGAGGGGUACCCGGGCCAGAGGCUCCCCUGCAAACUUUGCUGUGUACACUGCCCUGGUGGAACCCCAUGGGCGCAUCAUGGGCCUGGACCUUCCGGAUGGGGGCCACCUGACCCAUGGGUUCAUGACAGACAAGAAGAAAAUCUCUGCCACGUCCAUCUUCUUUGAAUCUAUGCCCUACAAGGUGAACCCAGAUACUGGCUACAUCAACUAUGACCAGCUGGAGGAGAACGCACGCCUCUUCCACCCGAAGCUGAUCAUCGCAGGAACCAGCUGCUACUCCCGAAACCUGGAAUAUGCCCGGCUACGGAAGAUUGCAGAUGAGAACGGGGCGUAUCUCAUGGCGGACAUGGCUCACAUCAGCGGGCUGGUGGCGGCUGGCGUGGUGCCCUCCCCAUUUGAACACUGCCAUGUGGUGACCACCACCACUCACAAGACCCUGCGAGGCUGCCGAGCUGGCAUGAUCUUCUACAGGAAAGGAGUGAAAAGUGUGGAUCCCAAGACUGGCAAAGAGAUUCUGUACAACCUGGAGUCUCUUAUCAAUUCUGCUGUGUUCCCUGGCCUGCAGGGAGGUCCCCACAACCACGCCAUUGCUGGGGUUGCUGUGGCACUGAAGCAAGCUAUGACUCUGGAAUUUAAAGUUUAUCAACACCAGGUGGUGGCCAACUGCAGGGCUCUGUCUGAGGCCCUGACGGAGCUGGGCUACAAAAUAGUCACAGGUGGUUCUGACAACCAUUUGAUCCUUGUGGAUCUCCGUUCCAAAGGCACAGAUGGUGGAAGGGCUGAGAAGGUGCUAGAAGCCUGUUCUAUUGCCUGCAACAAGAACACCUGUCCAGGUGACAGAAGCGCUCUGCGGCCCAGUGGЖCUGCGGCUGGGGACCCCAGCACUGACGUCCCGUGGACUUUUGGAAAЖAGACUUCCAAAAAGUAGCCCACUPUAUUCACAGAGGGAUAGAGCUGACCCUGCAGAUCCAGAGCGACACUGGUGUCAGAGCCACCCUGAAAGAGUUCAAGGAGAGACUGGCAGGGGAUAAGUACCAGGCGGCCGUGCAGGCUCUCCGGGAGGAGGUUGAGAGCUUCGCCUCUCUCUUCCCUCUGCCUGGCCUGCCUGACUUCUAAAGGAGCGGGCCCACUCUGGACCCACCUGGCGCCACAGAGGAAGCUGCCUGCCGGAGGACCCCCACCUGAGAGAUGGAUGAGCUGCUCCAAAGGGGAACUGUUGACACUCGGGCCCUUUGAGGGGGUUUCUUUUGGЖCUUUUUUCAUGUUUUCUUCACAAAUCAAAAUUUGUUUAAGUCUCAUUGUUAGUAAUUCUGGGACAGGUUAUUAAAGGAUUUAAAUUUGAACCUGGCUUUCUCACAGCUGGACAUAAUUCUAGGAAAAUAAAAUACUAUGUCGCCACUUGGUCAUAAUCAUUUAGAUGGUGGUGUAGGGCAAAGCUGUUAGAAAGAUUGPAGCGUUUUACUCUCCCUGGGCUUUCCUCCGCCUUGCUGCAACAGAGAGGAAAUGCCCAUGUCCACAGCUUGUACACACUGCCCCCUCACUAUCUUGUUAUCCAGUGGCAUGCCAAAGGAGAACUGAAUUAGCUUCUGAGGCUUCUGCUGUAAAUCAGAAGUGUAUGUUAGUCAAGAGUAAACAAGAUGCACCCAGUAUGGUGGGAGGGUUUUGCUGUCAGUAGCUCAAAGUAUGGUGUAGAAAUGGCCUCCUCCCPCCAPCCUGGGAAGUCCCAGUCCCAPCCUGGUGUGAGAAUCAACCAGGCUUUCCUGCUCCACCUGAGAUAACCAACUCCCPCCCGUAAUCAGGAAGCCAAAUGUCACCUUCCCAAAGAAAUUUUAUUUUCACGUAGCUGAAGUGCAAAACAUAGAUGACCAUUUUUAAUAAGCACAAUCAAAUUUUUAACCACAGAAUGUCUACAAGAAUUAUAGCUPUAAAAAAUACAACCAAUUUUUAUAUUUCAAAAAUAUUUGAACUCAAAUAAAUUAAUUUCUUAAAAAGUACACUUCUCAUACU
Sequence (SHORT NAMES ENCODING)	CGGGGGCGGGGCCAAGCCCAAGCCUGGCGCGCAGAGUGCACCUUCCUGAGCUCGAGCGGUCCAGCGCCAAGUUCGGGGUUUGGGGUUGGAGCGGCUGGUCACGUGGCUGGCCCGCGGCGGUGCGCGGGGCGUUGGGUCAGCGGGUCUGGGACUGGUGGCACCGGCGGCGGCGUAGGACGGAGGCGUCGCUAGGCAGCUUCGAACCAGUGCAAUGACGAUGCCAGUCAACGGGGCCCACAAGGAUGCUGACCUGUGGUCCUCACAUGACAAGAUGCUGGCACAACCCCUCAAAGACAGUGAUGUUGAGGUUUACAACAUCAUUAAGAAGGAGAGUAACCGGCAGAGGGUUGGAUUGGAGCUGAUUGCCUCGGAGAAUUUCGCCAGCCGAGCAGUUUUGGAGGCCCUAGGCUCUUGCUUAAAUAACAAAUACUCUGAGGGGUACCCGGGCCAGAGGCUCCCCUGCAAACUUUGCUGUGUACACUGCCCUGGUGGAACCCCAUGGGCGCAUCAUGGGCCUGGACCUUCCGGAUGGGGGCCACCUGACCCAUGGGUUCAUGACAGACAAGAAGAAAAUCUCUGCCACGUCCAUCUUCUUUGAAUCUAUGCCCUACAAGGUGAACCCAGAUACUGGCUACAUCAACUAUGACCAGCUGGAGGAGAACGCACGCCUCUUCCACCCGAAGCUGAUCAUCGCAGGAACCAGCUGCUACUCCCGAAACCUGGAAUAUGCCCGGCUACGGAAGAUUGCAGAUGAGAACGGGGCGUAUCUCAUGGCGGACAUGGCUCACAUCAGCGGGCUGGUGGCGGCUGGCGUGGUGCCCUCCCCAUUUGAACACUGCCAUGUGGUGACCACCACCACUCACAAGACCCUGCGAGGCUGCCGAGCUGGCAUGAUCUUCUACAGGAAAGGAGUGAAAAGUGUGGAUCCCAAGACUGGCAAAGAGAUUCUGUACAACCUGGAGUCUCUUAUCAAUUCUGCUGUGUUCCCUGGCCUGCAGGGAGGUCCCCACAACCACGCCAUUGCUGGGGUUGCUGUGGCACUGAAGCAAGCUAUGACUCUGGAAUUUAAAGUUUAUCAACACCAGGUGGUGGCCAACUGCAGGGCUCUGUCUGAGGCCCUGACGGAGCUGGGCUACAAAAUAGUCACAGGUGGUUCUGACAACCAUUUGAUCCUUGUGGAUCUCCGUUCCAAAGGCACAGAUGGUGGAAGGGCUGAGAAGGUGCUAGAAGCCUGUUCUAUUGCCUGCAACAAGAACACCUGUCCAGGUGACAGAAGCGCUCUGCGGCCCAGUGGm6ACUGCGGCUGGGGACCCCAGCACUGACGUCCCGUGGACUUUUGGAAAm6AAGACUUCCAAAAAGUAGCCCACUYUAUUCACAGAGGGAUAGAGCUGACCCUGCAGAUCCAGAGCGACACUGGUGUCAGAGCCACCCUGAAAGAGUUCAAGGAGAGACUGGCAGGGGAUAAGUACCAGGCGGCCGUGCAGGCUCUCCGGGAGGAGGUUGAGAGCUUCGCCUCUCUCUUCCCUCUGCCUGGCCUGCCUGACUUCUAAAGGAGCGGGCCCACUCUGGACCCACCUGGCGCCACAGAGGAAGCUGCCUGCCGGAGGACCCCCACCUGAGAGAUGGAUGAGCUGCUCCAAAGGGGAACUGUUGACACUCGGGCCCUUUGAGGGGGUUUCUUUUGGm6ACUUUUUUCAUGUUUUCUUCACAAAUCAAAAUUUGUUUAAGUCUCAUUGUUAGUAAUUCUGGGACAGGUUAUUAAAGGAUUUAAAUUUGAACCUGGCUUUCUCACAGCUGGACAUAAUUCUAGGAAAAUAAAAUACUAUGUCGCCACUUGGUCAUAAUCAUUUAGAUGGUGGUGUAGGGCAAAGCUGUUAGAAAGAUUGYAGCGUUUUACUCUCCCUGGGCUUUCCUCCGCCUUGCUGCAACAGAGAGGAAAUGCCCAUGUCCACAGCUUGUACACACUGCCCCCUCACUAUCUUGUUAUCCAGUGGCAUGCCAAAGGAGAACUGAAUUAGCUUCUGAGGCUUCUGCUGUAAAUCAGAAGUGUAUGUUAGUCAAGAGUAAACAAGAUGCACCCAGUAUGGUGGGAGGGUUUUGCUGUCAGUAGCUCAAAGUAUGGUGUAGAAAUGGCCUCCUCCCYCCAYCCUGGGAAGUCCCAGUCCCAYCCUGGUGUGAGAAUCAACCAGGCUUUCCUGCUCCACCUGAGAUAACCAACUCCCYCCCGUAAUCAGGAAGCCAAAUGUCACCUUCCCAAAGAAAUUUUAUUUUCACGUAGCUGAAGUGCAAAACAUAGAUGACCAUUUUUAAUAAGCACAAUCAAAUUUUUAACCACAGAAUGUCUACAAGAAUUAUAGCUYUAAAAAAUACAACCAAUUUUUAUAUUUCAAAAAUAUUUGAACUCAAAUAAAUUAAUUUCUUAAAAAGUACACUUCUCAUACU
Sequence (MODOMICS CODE ENCODING)	CGGGGGCGGGGCCAAGCCCAAGCCUGGCGCGCAGAGUGCACCUUCCUGAGCUCGAGCGGUCCAGCGCCAAGUUCGGGGUUUGGGGUUGGAGCGGCUGGUCACGUGGCUGGCCCGCGGCGGUGCGCGGGGCGUUGGGUCAGCGGGUCUGGGACUGGUGGCACCGGCGGCGGCGUAGGACGGAGGCGUCGCUAGGCAGCUUCGAACCAGUGCAAUGACGAUGCCAGUCAACGGGGCCCACAAGGAUGCUGACCUGUGGUCCUCACAUGACAAGAUGCUGGCACAACCCCUCAAAGACAGUGAUGUUGAGGUUUACAACAUCAUUAAGAAGGAGAGUAACCGGCAGAGGGUUGGAUUGGAGCUGAUUGCCUCGGAGAAUUUCGCCAGCCGAGCAGUUUUGGAGGCCCUAGGCUCUUGCUUAAAUAACAAAUACUCUGAGGGGUACCCGGGCCAGAGGCUCCCCUGCAAACUUUGCUGUGUACACUGCCCUGGUGGAACCCCAUGGGCGCAUCAUGGGCCUGGACCUUCCGGAUGGGGGCCACCUGACCCAUGGGUUCAUGACAGACAAGAAGAAAAUCUCUGCCACGUCCAUCUUCUUUGAAUCUAUGCCCUACAAGGUGAACCCAGAUACUGGCUACAUCAACUAUGACCAGCUGGAGGAGAACGCACGCCUCUUCCACCCGAAGCUGAUCAUCGCAGGAACCAGCUGCUACUCCCGAAACCUGGAAUAUGCCCGGCUACGGAAGAUUGCAGAUGAGAACGGGGCGUAUCUCAUGGCGGACAUGGCUCACAUCAGCGGGCUGGUGGCGGCUGGCGUGGUGCCCUCCCCAUUUGAACACUGCCAUGUGGUGACCACCACCACUCACAAGACCCUGCGAGGCUGCCGAGCUGGCAUGAUCUUCUACAGGAAAGGAGUGAAAAGUGUGGAUCCCAAGACUGGCAAAGAGAUUCUGUACAACCUGGAGUCUCUUAUCAAUUCUGCUGUGUUCCCUGGCCUGCAGGGAGGUCCCCACAACCACGCCAUUGCUGGGGUUGCUGUGGCACUGAAGCAAGCUAUGACUCUGGAAUUUAAAGUUUAUCAACACCAGGUGGUGGCCAACUGCAGGGCUCUGUCUGAGGCCCUGACGGAGCUGGGCUACAAAAUAGUCACAGGUGGUUCUGACAACCAUUUGAUCCUUGUGGAUCUCCGUUCCAAAGGCACAGAUGGUGGAAGGGCUGAGAAGGUGCUAGAAGCCUGUUCUAUUGCCUGCAACAAGAACACCUGUCCAGGUGACAGAAGCGCUCUGCGGCCCAGUGG2000000006ACUGCGGCUGGGGACCCCAGCACUGACGUCCCGUGGACUUUUGGAAA2000000006AAGACUUCCAAAAAGUAGCCCACU2000000009UUAUUCACAGAGGGAUAGAGCUGACCCUGCAGAUCCAGAGCGACACUGGUGUCAGAGCCACCCUGAAAGAGUUCAAGGAGAGACUGGCAGGGGAUAAGUACCAGGCGGCCGUGCAGGCUCUCCGGGAGGAGGUUGAGAGCUUCGCCUCUCUCUUCCCUCUGCCUGGCCUGCCUGACUUCUAAAGGAGCGGGCCCACUCUGGACCCACCUGGCGCCACAGAGGAAGCUGCCUGCCGGAGGACCCCCACCUGAGAGAUGGAUGAGCUGCUCCAAAGGGGAACUGUUGACACUCGGGCCCUUUGAGGGGGUUUCUUUUGG2000000006ACUUUUUUCAUGUUUUCUUCACAAAUCAAAAUUUGUUUAAGUCUCAUUGUUAGUAAUUCUGGGACAGGUUAUUAAAGGAUUUAAAUUUGAACCUGGCUUUCUCACAGCUGGACAUAAUUCUAGGAAAAUAAAAUACUAUGUCGCCACUUGGUCAUAAUCAUUUAGAUGGUGGUGUAGGGCAAAGCUGUUAGAAAGAUUG2000000009UAGCGUUUUACUCUCCCUGGGCUUUCCUCCGCCUUGCUGCAACAGAGAGGAAAUGCCCAUGUCCACAGCUUGUACACACUGCCCCCUCACUAUCUUGUUAUCCAGUGGCAUGCCAAAGGAGAACUGAAUUAGCUUCUGAGGCUUCUGCUGUAAAUCAGAAGUGUAUGUUAGUCAAGAGUAAACAAGAUGCACCCAGUAUGGUGGGAGGGUUUUGCUGUCAGUAGCUCAAAGUAUGGUGUAGAAAUGGCCUCCUCCC2000000009UCCA2000000009UCCUGGGAAGUCCCAGUCCCA2000000009UCCUGGUGUGAGAAUCAACCAGGCUUUCCUGCUCCACCUGAGAUAACCAACUCCC2000000009UCCCGUAAUCAGGAAGCCAAAUGUCACCUUCCCAAAGAAAUUUUAUUUUCACGUAGCUGAAGUGCAAAACAUAGAUGACCAUUUUUAAUAAGCACAAUCAAAUUUUUAACCACAGAAUGUCUACAAGAAUUAUAGCU2000000009UUAAAAAAUACAACCAAUUUUUAUAUUUCAAAAAUAUUUGAACUCAAAUAAAUUAAUUUCUUAAAAAGUACACUUCUCAUACU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1295	1342	1366	1683	1882	2138	2142	2163	2218	2355
Modification Positions	m6A	m6A	Y	m6A	Y	Y	Y	Y	Y	Y
Genomic Coordinates	17:18329360:-	17:18329313:-	17:18329289:-	17:18328614:-	17:18328415:-	17:18328159:-	17:18328155:-	17:18328134:-	17:18328079:-	17:18327942:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	fhx8RaDLaBC3 hcdxNYyukcBe BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr eNmyzvoSFF4c XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8