Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000529383
Gene ID: ENSG00000108312
Gene Name: UBTF
Sequence (UNICHARACTER ENCODING) GCGGAGCCGGGCUGCAGGGGCUGGGGGAGGGGGUCACGAGGAAGAGGAGGGGCGCACUCCCAUUCCCAUAGACCCCUUAAGUCUAAUAAGGUCAUGGCUGAGUCUCUCAGAGUGUGGACCUGCCCCCUUCUACUCUGGGCGGUUAGAAAGUCGUUAGUCGUUCACCUCUCAGCCUUCCUGAGUGGGAACUGGUAUGUCUUCCAAAGGGUGAGGUGGCUUUGACCCCGGGUUGCCCGGCCAGCACGACCGAGGAGGUGGCUGGACAGCUGGAGGAUGAACGGAGAAGCCGACUGCCCCACAGACCUGGAAAUGGCCGCCCCCAAAGGCCAAGACCGUUGGUCCCAGGAAGACAUGCUGACUUUGCUGGAAUGCAUGAAGAACAACCUUCCAPCCAAUGACAGCUCCAAGUUCAAAACCACCGAAUCACACAUGGACUGGGAAAAAGUAGCAUUUAAAGЖCUUUUCUGGAGACAUGUGCAAGCUCAAAUGGGUGGAGAUUUCUAAUGAGGUGAGGAAGUUCCGUACAUUGACAGAAUUGAUCCUCGAUGCUCAGGAACAUGUUAAAAAUCCUUACAAAGGCAAAAAACUCAAGAAACACCCAGACUUCCCAAAGAAGCCCCUGACCCCUUAUUUCCGCUUCUUCAUGGAGAAGCGGGCCAAGUAUGCGAAACUCCACCCUGAGAUGAGCAACCUGGACCUAACCAAGAUUCUGUCCAAGAAAUACAAGGAGCUUCCGGAGAAGAAGAAGAUGAAAUAUAUUCAGGACUUCCAGAGAGAGAAACAGGAGUUCGAGCGAAACCUGGCCCGAUUCAGGGAGGAUCACCCCGACCUAAUCCAGAAUGCCAAGAAAUCGGACAUCCCAGAGAAGCCCAAAACCCCCCAGCAGCUGUGGUACACCCACGAGAAGAAGGUGUAUCUCAAAGUGCGGCCAGAUGCCACUACGAAGGAGGUGAAGGACUCCCUGGGGAAGCAGUGGUCUCAGCUCUCGGACAAAAAGAGGCUGAAAUGGAUUCAUAAGGCCCUGGAGCAGCGGAAGGAGUACGAGGAGAUCAUGAGAGACUAUAUCCAGAAGCACCCAGAGCUGAACAUCAGUGAGGAGGGUAUCACCAAGUCCACCCUCACCAAGGCCGAACGCCAGCUCAAGGACAAGUUUGACGGGCGACCCACCAAGCCACCPCCGAACAGCUACUCGCUGUACUGCGCAGAGCUCAUGGCCAACAUGAAGGACGUGCCCAGCACAGAGCGCAUGGUGCUGUGCAGCCAGCAGUGGAAGCUGCUGUCCCAGAAGGAGAAGGACGCCUAUCACAAGAAGUGUGAUCAGAAAAAGAAAGAUUACGAGGUGGAGCUGCUCCGUUUCCUCGAGAGCCUGCCUGAGGAGGAGCAGCAGCGGGUCUUGGGGGAAGAGAAGAUGCUGAACAUCAACAAGAAGCAGGCCACCAGCCCCGCCUCCAAGAAGCCAGCCCAGGAAGGGGGCAAGGGCGGCUCCGAGAAGCCCAAGCGGCCCGUGUCGGCCAUGUUCAUCUUCUCGGAGGAGAAACGGCGGCAGCUGCAGGAGGAGCGGCCUGAGCUCUCCGAGAGCGAGCUGACCCGCCUGCUGGCCCGAAUGUGGAACGACCUGUCUGAGAAGAAGAAGGCCAAGUACAAGGCCCGAGAGGCGGCGCUCAAGGCUCAGUCGGAGAGGAAGCCCGGCGGGGAGCGCGAGGAACGGGGCAAGCUGCCCGAGUCCCCCAAAAGAGCUGAGGAGAUCUGGCAACAGAGCGUUAUCGGCGACUACCUGGCCCGCUUCAAGAAUGACCGGGUGAAGGCCUUGAAAGCCAUGGAAAUGACCUGGAAUAЖCAUGGAAAAGAAGGAGAAACUGAUGUGGAUUAAGAAGGCAGCCGAAGACCAAAAGCGAUAUGAGAGAGAGCUGAGUGAGAUGCGGGCACCUCCAGCUGCUACAAAUUCUUCCAAGAAGAUGAAAUUCCAGGGAGAACCCAAGAAGCCUCCCAUGAACGGUUACCAGAAGUUCUCCCAGGAGCUGCUGUCCAAUGGGGAGCUGAACCACCUGCCGCUGAAGGAGCGCAUGGUGGAGAUCGGCAGUCGCUGGCAGCGCAUCUCCCAGAGCCAGAAGGAGCACUACAAAAAGCUGGCCGAGGAGCAGCAAAAGCAGUACAAGGUGCACCUGGACCUCUGGGUUAAGAGCCUGUCUCCCCAGGACCGUGCAGCAUAUAAAGAGUACAUCUCCAAUAAACGUAAGAGCAUGACCAAGCUGCGAGGCCCAAACCCCAAAUCCAGCCGGACUACUCUGCAGUCCAAGUCGGAGUCCGAGGAGGAUGAUGAAGAGGAUGAGGAUGACGAGGACGAGGAUGAAGAAGAGGAAGAUGAUGAGAAUGGGGACUCCUCUGAAGAUGGCGGCGACUCCUCUGAGUCCAGCAGCGAGGACGAGAGCGAGGAUGGGGAUGAGAAUGAAGAGGAUGACGAGGACGAAGACGACGACGAGGAUGACGAUGAGGAUGAAGAUAAUGAGUCCGAGGGCAGCAGCUCCAGCUCCPCCUCCUCAGGGGACUCCUCAGЖCUCUGACUCCAACUGAGG
Sequence (SHORT NAMES ENCODING) GCGGAGCCGGGCUGCAGGGGCUGGGGGAGGGGGUCACGAGGAAGAGGAGGGGCGCACUCCCAUUCCCAUAGACCCCUUAAGUCUAAUAAGGUCAUGGCUGAGUCUCUCAGAGUGUGGACCUGCCCCCUUCUACUCUGGGCGGUUAGAAAGUCGUUAGUCGUUCACCUCUCAGCCUUCCUGAGUGGGAACUGGUAUGUCUUCCAAAGGGUGAGGUGGCUUUGACCCCGGGUUGCCCGGCCAGCACGACCGAGGAGGUGGCUGGACAGCUGGAGGAUGAACGGAGAAGCCGACUGCCCCACAGACCUGGAAAUGGCCGCCCCCAAAGGCCAAGACCGUUGGUCCCAGGAAGACAUGCUGACUUUGCUGGAAUGCAUGAAGAACAACCUUCCAYCCAAUGACAGCUCCAAGUUCAAAACCACCGAAUCACACAUGGACUGGGAAAAAGUAGCAUUUAAAGm6ACUUUUCUGGAGACAUGUGCAAGCUCAAAUGGGUGGAGAUUUCUAAUGAGGUGAGGAAGUUCCGUACAUUGACAGAAUUGAUCCUCGAUGCUCAGGAACAUGUUAAAAAUCCUUACAAAGGCAAAAAACUCAAGAAACACCCAGACUUCCCAAAGAAGCCCCUGACCCCUUAUUUCCGCUUCUUCAUGGAGAAGCGGGCCAAGUAUGCGAAACUCCACCCUGAGAUGAGCAACCUGGACCUAACCAAGAUUCUGUCCAAGAAAUACAAGGAGCUUCCGGAGAAGAAGAAGAUGAAAUAUAUUCAGGACUUCCAGAGAGAGAAACAGGAGUUCGAGCGAAACCUGGCCCGAUUCAGGGAGGAUCACCCCGACCUAAUCCAGAAUGCCAAGAAAUCGGACAUCCCAGAGAAGCCCAAAACCCCCCAGCAGCUGUGGUACACCCACGAGAAGAAGGUGUAUCUCAAAGUGCGGCCAGAUGCCACUACGAAGGAGGUGAAGGACUCCCUGGGGAAGCAGUGGUCUCAGCUCUCGGACAAAAAGAGGCUGAAAUGGAUUCAUAAGGCCCUGGAGCAGCGGAAGGAGUACGAGGAGAUCAUGAGAGACUAUAUCCAGAAGCACCCAGAGCUGAACAUCAGUGAGGAGGGUAUCACCAAGUCCACCCUCACCAAGGCCGAACGCCAGCUCAAGGACAAGUUUGACGGGCGACCCACCAAGCCACCYCCGAACAGCUACUCGCUGUACUGCGCAGAGCUCAUGGCCAACAUGAAGGACGUGCCCAGCACAGAGCGCAUGGUGCUGUGCAGCCAGCAGUGGAAGCUGCUGUCCCAGAAGGAGAAGGACGCCUAUCACAAGAAGUGUGAUCAGAAAAAGAAAGAUUACGAGGUGGAGCUGCUCCGUUUCCUCGAGAGCCUGCCUGAGGAGGAGCAGCAGCGGGUCUUGGGGGAAGAGAAGAUGCUGAACAUCAACAAGAAGCAGGCCACCAGCCCCGCCUCCAAGAAGCCAGCCCAGGAAGGGGGCAAGGGCGGCUCCGAGAAGCCCAAGCGGCCCGUGUCGGCCAUGUUCAUCUUCUCGGAGGAGAAACGGCGGCAGCUGCAGGAGGAGCGGCCUGAGCUCUCCGAGAGCGAGCUGACCCGCCUGCUGGCCCGAAUGUGGAACGACCUGUCUGAGAAGAAGAAGGCCAAGUACAAGGCCCGAGAGGCGGCGCUCAAGGCUCAGUCGGAGAGGAAGCCCGGCGGGGAGCGCGAGGAACGGGGCAAGCUGCCCGAGUCCCCCAAAAGAGCUGAGGAGAUCUGGCAACAGAGCGUUAUCGGCGACUACCUGGCCCGCUUCAAGAAUGACCGGGUGAAGGCCUUGAAAGCCAUGGAAAUGACCUGGAAUAm6ACAUGGAAAAGAAGGAGAAACUGAUGUGGAUUAAGAAGGCAGCCGAAGACCAAAAGCGAUAUGAGAGAGAGCUGAGUGAGAUGCGGGCACCUCCAGCUGCUACAAAUUCUUCCAAGAAGAUGAAAUUCCAGGGAGAACCCAAGAAGCCUCCCAUGAACGGUUACCAGAAGUUCUCCCAGGAGCUGCUGUCCAAUGGGGAGCUGAACCACCUGCCGCUGAAGGAGCGCAUGGUGGAGAUCGGCAGUCGCUGGCAGCGCAUCUCCCAGAGCCAGAAGGAGCACUACAAAAAGCUGGCCGAGGAGCAGCAAAAGCAGUACAAGGUGCACCUGGACCUCUGGGUUAAGAGCCUGUCUCCCCAGGACCGUGCAGCAUAUAAAGAGUACAUCUCCAAUAAACGUAAGAGCAUGACCAAGCUGCGAGGCCCAAACCCCAAAUCCAGCCGGACUACUCUGCAGUCCAAGUCGGAGUCCGAGGAGGAUGAUGAAGAGGAUGAGGAUGACGAGGACGAGGAUGAAGAAGAGGAAGAUGAUGAGAAUGGGGACUCCUCUGAAGAUGGCGGCGACUCCUCUGAGUCCAGCAGCGAGGACGAGAGCGAGGAUGGGGAUGAGAAUGAAGAGGAUGACGAGGACGAAGACGACGACGAGGAUGACGAUGAGGAUGAAGAUAAUGAGUCCGAGGGCAGCAGCUCCAGCUCCYCCUCCUCAGGGGACUCCUCAGm6ACUCUGACUCCAACUGAGG
Sequence (MODOMICS CODE ENCODING) GCGGAGCCGGGCUGCAGGGGCUGGGGGAGGGGGUCACGAGGAAGAGGAGGGGCGCACUCCCAUUCCCAUAGACCCCUUAAGUCUAAUAAGGUCAUGGCUGAGUCUCUCAGAGUGUGGACCUGCCCCCUUCUACUCUGGGCGGUUAGAAAGUCGUUAGUCGUUCACCUCUCAGCCUUCCUGAGUGGGAACUGGUAUGUCUUCCAAAGGGUGAGGUGGCUUUGACCCCGGGUUGCCCGGCCAGCACGACCGAGGAGGUGGCUGGACAGCUGGAGGAUGAACGGAGAAGCCGACUGCCCCACAGACCUGGAAAUGGCCGCCCCCAAAGGCCAAGACCGUUGGUCCCAGGAAGACAUGCUGACUUUGCUGGAAUGCAUGAAGAACAACCUUCCA2000000009UCCAAUGACAGCUCCAAGUUCAAAACCACCGAAUCACACAUGGACUGGGAAAAAGUAGCAUUUAAAG2000000006ACUUUUCUGGAGACAUGUGCAAGCUCAAAUGGGUGGAGAUUUCUAAUGAGGUGAGGAAGUUCCGUACAUUGACAGAAUUGAUCCUCGAUGCUCAGGAACAUGUUAAAAAUCCUUACAAAGGCAAAAAACUCAAGAAACACCCAGACUUCCCAAAGAAGCCCCUGACCCCUUAUUUCCGCUUCUUCAUGGAGAAGCGGGCCAAGUAUGCGAAACUCCACCCUGAGAUGAGCAACCUGGACCUAACCAAGAUUCUGUCCAAGAAAUACAAGGAGCUUCCGGAGAAGAAGAAGAUGAAAUAUAUUCAGGACUUCCAGAGAGAGAAACAGGAGUUCGAGCGAAACCUGGCCCGAUUCAGGGAGGAUCACCCCGACCUAAUCCAGAAUGCCAAGAAAUCGGACAUCCCAGAGAAGCCCAAAACCCCCCAGCAGCUGUGGUACACCCACGAGAAGAAGGUGUAUCUCAAAGUGCGGCCAGAUGCCACUACGAAGGAGGUGAAGGACUCCCUGGGGAAGCAGUGGUCUCAGCUCUCGGACAAAAAGAGGCUGAAAUGGAUUCAUAAGGCCCUGGAGCAGCGGAAGGAGUACGAGGAGAUCAUGAGAGACUAUAUCCAGAAGCACCCAGAGCUGAACAUCAGUGAGGAGGGUAUCACCAAGUCCACCCUCACCAAGGCCGAACGCCAGCUCAAGGACAAGUUUGACGGGCGACCCACCAAGCCACC2000000009UCCGAACAGCUACUCGCUGUACUGCGCAGAGCUCAUGGCCAACAUGAAGGACGUGCCCAGCACAGAGCGCAUGGUGCUGUGCAGCCAGCAGUGGAAGCUGCUGUCCCAGAAGGAGAAGGACGCCUAUCACAAGAAGUGUGAUCAGAAAAAGAAAGAUUACGAGGUGGAGCUGCUCCGUUUCCUCGAGAGCCUGCCUGAGGAGGAGCAGCAGCGGGUCUUGGGGGAAGAGAAGAUGCUGAACAUCAACAAGAAGCAGGCCACCAGCCCCGCCUCCAAGAAGCCAGCCCAGGAAGGGGGCAAGGGCGGCUCCGAGAAGCCCAAGCGGCCCGUGUCGGCCAUGUUCAUCUUCUCGGAGGAGAAACGGCGGCAGCUGCAGGAGGAGCGGCCUGAGCUCUCCGAGAGCGAGCUGACCCGCCUGCUGGCCCGAAUGUGGAACGACCUGUCUGAGAAGAAGAAGGCCAAGUACAAGGCCCGAGAGGCGGCGCUCAAGGCUCAGUCGGAGAGGAAGCCCGGCGGGGAGCGCGAGGAACGGGGCAAGCUGCCCGAGUCCCCCAAAAGAGCUGAGGAGAUCUGGCAACAGAGCGUUAUCGGCGACUACCUGGCCCGCUUCAAGAAUGACCGGGUGAAGGCCUUGAAAGCCAUGGAAAUGACCUGGAAUA2000000006ACAUGGAAAAGAAGGAGAAACUGAUGUGGAUUAAGAAGGCAGCCGAAGACCAAAAGCGAUAUGAGAGAGAGCUGAGUGAGAUGCGGGCACCUCCAGCUGCUACAAAUUCUUCCAAGAAGAUGAAAUUCCAGGGAGAACCCAAGAAGCCUCCCAUGAACGGUUACCAGAAGUUCUCCCAGGAGCUGCUGUCCAAUGGGGAGCUGAACCACCUGCCGCUGAAGGAGCGCAUGGUGGAGAUCGGCAGUCGCUGGCAGCGCAUCUCCCAGAGCCAGAAGGAGCACUACAAAAAGCUGGCCGAGGAGCAGCAAAAGCAGUACAAGGUGCACCUGGACCUCUGGGUUAAGAGCCUGUCUCCCCAGGACCGUGCAGCAUAUAAAGAGUACAUCUCCAAUAAACGUAAGAGCAUGACCAAGCUGCGAGGCCCAAACCCCAAAUCCAGCCGGACUACUCUGCAGUCCAAGUCGGAGUCCGAGGAGGAUGAUGAAGAGGAUGAGGAUGACGAGGACGAGGAUGAAGAAGAGGAAGAUGAUGAGAAUGGGGACUCCUCUGAAGAUGGCGGCGACUCCUCUGAGUCCAGCAGCGAGGACGAGAGCGAGGAUGGGGAUGAGAAUGAAGAGGAUGACGAGGACGAAGACGACGACGAGGAUGACGAUGAGGAUGAAGAUAAUGAGUCCGAGGGCAGCAGCUCCAGCUCC2000000009UCCUCCUCAGGGGACUCCUCAG2000000006ACUCUGACUCCAACUGAGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 391 458 1176 1835 2530 2552
Modification Positions Y m6A Y m6A Y m6A
Genomic Coordinates 17:44216645:- 17:44216578:- 17:44211875:- 17:44210188:- 17:44207280:- 17:44207258:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
4HMi5ykupT9V
jNkxUQNx8GRd
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
nfCHyrYzE6fB
Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
Lny8GcCeVGc9
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8