General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000444415
Gene ID:	ENSG00000076604
Gene Name:	TRAF4
Sequence (UNICHARACTER ENCODING)	GCUCCAGCGAGGCGCGGGCUGUGGGGCCGCCGCGUGCCUGGCCCCGCUCGCCCGUGCCGGCCGCUCGCCCGCCAUGCCUGGCUUCGACUACAAGUUCCUGGAGAAGCCCAAGCGACGGCUGCUGUGCCCACUGUGCGGGAAGCCCAUGCGCGAGCCUGUGCAGGUUUCCACCUGCGGCCACCGUUUCUGCGAUACCUGCCUGCAGGAGUUCCUCAGUGAAGGAGUCUUCAAGUGCCCUGAGGACCAGCUUCCUCUGGACUAUGCCAAGAUCUACCCAGACCCGGAGCUGGAAGUACAAGUAUUGGGCCUGCCUAUCCGCUGCAPCCACAGUGAGGAGGGCUGCCGCUGGAGUGGGCCACUACGUCAUCUACAGGGCCACCUGAAUACCUGCAGCUUCAAUGUCAUUCCCUGCCCUAAUCGCUGCCCCAUGAAGCUGAGCCGCCGUGAUCUACCUGCACACUUGCAGCAUGACUGCCCCAAGCGGCGCCUCAAGUGCGAGUUUUGUGGCUGUGACUUCAGUGGGGAGGCCUAUGAGAGCCAUGAGGGUAUGUGCCCCCAGGAGAGUGUCUACUGUGAGAAUAAGUGUGGUGCCCGCAUGAUGCGGCGGCUGCUGGCCCAGCAUGCCACCUCUGAGUGCCCCAAGCGCACUCAGCCCUGCACCUACUGCACUAAGGAGUUCGUCUUUGACACCAUCCAGAGCCACCAGUACCAGUGCCCAAGGCUGCCUGUUGCCUGCCCCAACCAAUGUGGUGUGGGCACUGUGGCUCGGGAGGACCUGCCAGGCCAUCUGAAGGACAGCUGUAACACCGCCCUGGUGCUCUGCCCAUUCAAAGACUCCGGCUGCAAGCACAGGUGCCCUAAGCUGGCAAUGGCACGGCAUGUGGAGGAGAGUGUGAAGCCACAUCUGGCCAUGAUGUGUGCCCUGGUGAGCCGGCAACGGCAGGAGCUGCAGGAGCUUCGGCGAGAGCUGGAGGAGCUAUCAGUGGGCAGUGAUGGCGUGCUCAUCUGGAAGAUUGGCAGCUAUGGЖCGGCGGCUACAGGAGGCCAAGGCCAAGCCCAACCUUGЖGUGCUUCAGCCCAGCCUUCUACACACAUAAGUAUGGUUACAAGCUGCAGGUGUCUGCAUUCCUCAAUGGCAAUGGCAGUGGUGAGGGCACACACCUCUCACUGUACAUUCGUGUGCUGCCUGGUGCCUUUGЖCAAUCUCCUUGAGUGGCCCUUUGCCCGCCGUGGCCUGUCUCCCUUCUUGGGUAGGGCAGACAUGCCUUGGUGCCGGUCACACUCUACЖCGGЖCUGAGGUGCCUGCUCAGGUGCUAUGUCCCAAGAGCCAPAAGGGGGUGGGAAUUGGGGAGGGAGAAAGGGUAGUUCAAAGAGUCUGUCUUGAGAUCUGAUUUUUUCCCCCUPUACCUAGCUGUGCCCCCUCUGGUUAUUUAUUUCCUUAGUGCCAGGAGGGCACAGCA
Sequence (SHORT NAMES ENCODING)	GCUCCAGCGAGGCGCGGGCUGUGGGGCCGCCGCGUGCCUGGCCCCGCUCGCCCGUGCCGGCCGCUCGCCCGCCAUGCCUGGCUUCGACUACAAGUUCCUGGAGAAGCCCAAGCGACGGCUGCUGUGCCCACUGUGCGGGAAGCCCAUGCGCGAGCCUGUGCAGGUUUCCACCUGCGGCCACCGUUUCUGCGAUACCUGCCUGCAGGAGUUCCUCAGUGAAGGAGUCUUCAAGUGCCCUGAGGACCAGCUUCCUCUGGACUAUGCCAAGAUCUACCCAGACCCGGAGCUGGAAGUACAAGUAUUGGGCCUGCCUAUCCGCUGCAYCCACAGUGAGGAGGGCUGCCGCUGGAGUGGGCCACUACGUCAUCUACAGGGCCACCUGAAUACCUGCAGCUUCAAUGUCAUUCCCUGCCCUAAUCGCUGCCCCAUGAAGCUGAGCCGCCGUGAUCUACCUGCACACUUGCAGCAUGACUGCCCCAAGCGGCGCCUCAAGUGCGAGUUUUGUGGCUGUGACUUCAGUGGGGAGGCCUAUGAGAGCCAUGAGGGUAUGUGCCCCCAGGAGAGUGUCUACUGUGAGAAUAAGUGUGGUGCCCGCAUGAUGCGGCGGCUGCUGGCCCAGCAUGCCACCUCUGAGUGCCCCAAGCGCACUCAGCCCUGCACCUACUGCACUAAGGAGUUCGUCUUUGACACCAUCCAGAGCCACCAGUACCAGUGCCCAAGGCUGCCUGUUGCCUGCCCCAACCAAUGUGGUGUGGGCACUGUGGCUCGGGAGGACCUGCCAGGCCAUCUGAAGGACAGCUGUAACACCGCCCUGGUGCUCUGCCCAUUCAAAGACUCCGGCUGCAAGCACAGGUGCCCUAAGCUGGCAAUGGCACGGCAUGUGGAGGAGAGUGUGAAGCCACAUCUGGCCAUGAUGUGUGCCCUGGUGAGCCGGCAACGGCAGGAGCUGCAGGAGCUUCGGCGAGAGCUGGAGGAGCUAUCAGUGGGCAGUGAUGGCGUGCUCAUCUGGAAGAUUGGCAGCUAUGGm6ACGGCGGCUACAGGAGGCCAAGGCCAAGCCCAACCUUGm6AGUGCUUCAGCCCAGCCUUCUACACACAUAAGUAUGGUUACAAGCUGCAGGUGUCUGCAUUCCUCAAUGGCAAUGGCAGUGGUGAGGGCACACACCUCUCACUGUACAUUCGUGUGCUGCCUGGUGCCUUUGm6ACAAUCUCCUUGAGUGGCCCUUUGCCCGCCGUGGCCUGUCUCCCUUCUUGGGUAGGGCAGACAUGCCUUGGUGCCGGUCACACUCUACm6ACGGm6ACUGAGGUGCCUGCUCAGGUGCUAUGUCCCAAGAGCCAYAAGGGGGUGGGAAUUGGGGAGGGAGAAAGGGUAGUUCAAAGAGUCUGUCUUGAGAUCUGAUUUUUUCCCCCUYUACCUAGCUGUGCCCCCUCUGGUUAUUUAUUUCCUUAGUGCCAGGAGGGCACAGCA
Sequence (MODOMICS CODE ENCODING)	GCUCCAGCGAGGCGCGGGCUGUGGGGCCGCCGCGUGCCUGGCCCCGCUCGCCCGUGCCGGCCGCUCGCCCGCCAUGCCUGGCUUCGACUACAAGUUCCUGGAGAAGCCCAAGCGACGGCUGCUGUGCCCACUGUGCGGGAAGCCCAUGCGCGAGCCUGUGCAGGUUUCCACCUGCGGCCACCGUUUCUGCGAUACCUGCCUGCAGGAGUUCCUCAGUGAAGGAGUCUUCAAGUGCCCUGAGGACCAGCUUCCUCUGGACUAUGCCAAGAUCUACCCAGACCCGGAGCUGGAAGUACAAGUAUUGGGCCUGCCUAUCCGCUGCA2000000009UCCACAGUGAGGAGGGCUGCCGCUGGAGUGGGCCACUACGUCAUCUACAGGGCCACCUGAAUACCUGCAGCUUCAAUGUCAUUCCCUGCCCUAAUCGCUGCCCCAUGAAGCUGAGCCGCCGUGAUCUACCUGCACACUUGCAGCAUGACUGCCCCAAGCGGCGCCUCAAGUGCGAGUUUUGUGGCUGUGACUUCAGUGGGGAGGCCUAUGAGAGCCAUGAGGGUAUGUGCCCCCAGGAGAGUGUCUACUGUGAGAAUAAGUGUGGUGCCCGCAUGAUGCGGCGGCUGCUGGCCCAGCAUGCCACCUCUGAGUGCCCCAAGCGCACUCAGCCCUGCACCUACUGCACUAAGGAGUUCGUCUUUGACACCAUCCAGAGCCACCAGUACCAGUGCCCAAGGCUGCCUGUUGCCUGCCCCAACCAAUGUGGUGUGGGCACUGUGGCUCGGGAGGACCUGCCAGGCCAUCUGAAGGACAGCUGUAACACCGCCCUGGUGCUCUGCCCAUUCAAAGACUCCGGCUGCAAGCACAGGUGCCCUAAGCUGGCAAUGGCACGGCAUGUGGAGGAGAGUGUGAAGCCACAUCUGGCCAUGAUGUGUGCCCUGGUGAGCCGGCAACGGCAGGAGCUGCAGGAGCUUCGGCGAGAGCUGGAGGAGCUAUCAGUGGGCAGUGAUGGCGUGCUCAUCUGGAAGAUUGGCAGCUAUGG2000000006ACGGCGGCUACAGGAGGCCAAGGCCAAGCCCAACCUUG2000000006AGUGCUUCAGCCCAGCCUUCUACACACAUAAGUAUGGUUACAAGCUGCAGGUGUCUGCAUUCCUCAAUGGCAAUGGCAGUGGUGAGGGCACACACCUCUCACUGUACAUUCGUGUGCUGCCUGGUGCCUUUG2000000006ACAAUCUCCUUGAGUGGCCCUUUGCCCGCCGUGGCCUGUCUCCCUUCUUGGGUAGGGCAGACAUGCCUUGGUGCCGGUCACACUCUAC2000000006ACGG2000000006ACUGAGGUGCCUGCUCAGGUGCUAUGUCCCAAGAGCCA2000000009UAAGGGGGUGGGAAUUGGGGAGGGAGAAAGGGUAGUUCAAAGAGUCUGUCUUGAGAUCUGAUUUUUUCCCCCU2000000009UUACCUAGCUGUGCCCCCUCUGGUUAUUUAUUUCCUUAGUGCCAGGAGGGCACAGCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	324	1027	1065	1197	1285	1289	1327	1400
Modification Positions	Y	m6A	m6A	m6A	Am	m6A	Y	Y
Genomic Coordinates	17:28747898:+	17:28749118:+	17:28749156:+	17:28749288:+	17:28749866:+	17:28749870:+	17:28749908:+	17:28749981:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G	dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8