General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000509079
Gene ID:	ENSG00000121067
Gene Name:	SPOP
Sequence (UNICHARACTER ENCODING)	GUGCUGACGCCAUGACGCCCCGGCUGGUGUGUGUCGGUGUGUAUGUGUGUGUGUGAGUGUGCGCGCUCCGAGUGUGUGUGUAUUUGUGUAUCGGCGGUCCCGCAGGUCCCGGAUGUUGCGGACAGUAUGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCUGUCGCCGCCGCUCUCAGGCUCUGGGAACCACCCUUCUACUUUCUGUCUCUAGGAAUUUCACUACUCUAGAGAUUUCCUGUUAGACAAGACAAAUUAGAGUUUUCCUACUGACUUAACUUGGGUGAAGAGGGAACAGAAAUCUUUGCCCCCUGACUUUGGAAAUCUCGUUUAACCUUCAAACUGGCGAUGUCAAGGGUUCCAAGUCCPCCACCPCCGGCAGAAAUGUCGAGUGGCCCCGUAGCUGAGAGUUGGUGCUACACACAGAUCAAGGUAGUGAAAUUCUCCUACAUGUGGACCAUCAAUAACUPUAGCUUUUGCCGGGAGGAAAUGGGUGAAGUCAUUAAAAGUUCUACAUUUUCAUCAGGAGCAAAUGAUAAACUGAAAUGGUGUUUGCGAGUAAACCCCAAAGGGUUAGAUGAAGAAAGCAAAGAUUACCUGUCACUPUACCUGUUACUGGUCAGCUGUCCAAAGAGUGAAGUUCGGGCAAAAUUCAAAUUCUCCAPCCUGAAUGCCAAGGGAGAAGAAACCAAAGCUAUGGAGAGUCAACGGGCAUAUAGGUUUGUGCAAGGCAAAGACUGGGGAUUCAAGAAAUUCAPCCGUAGAGAUUUUCUUUUGGAUGAGGCCAACGGGCUUCUCCCUGAUGЖCAAGCUUACCCUCUUCUGCGAGGUGAGUGUUGUGCAAGAUUCUGUCAACAUUUCUGGCCAGAAUACCAUGAACAUGGUAAAGGUUCCUGAGUGCCGGCUGGCAGAUGAGUUAGGAGGACUGUGGGAGAAUUCCCGGUUCACAGACUGCUGCUUGUGUGUUGCCGGCCAGGAAUUCCAGGCUCACAAGGCUAUCUUAGCAGCUCGUUCUCCGGUUUUUAGUGCCAUGUUUGAACAUGAAAUGGAGGAGAGCAAAAAGAAUCGAGUUGAAAUCAAUGAUGUGGAGCCUGAAGUUUUUAAGGAAAUGAUGUGCUUCAUUUACACGGGGAAGGCUCCAAACCUCGACAAAAUGGCUGAUGAUPUGCUGGCAGCUGCUGACAAGUAUGCCCUGGAGCGCUUAAAGGUCAUGUGUGAGGAUGCCCUCUGCAGUAACCUGUCCGUGGAGAACGCUGCAGAAAUUCUCAPCCUGGCCGACCUCCACAGUGCAGAUCAGUUGAAAACUCAGGCAGUGGAUUUCAUCAACUAUCAUGCUUCGGAUGUCUUGGAGACCUCUGGGUGGAAGUCAAUGGUGGUGUCACAPCCCCACUUGGUGGCUGAGGCAUACCGCUCUCUGGCUUCAGCACAGUGCCCUUUUCUGGGACCCCCACGCAAACGCCUGAAGCAAUCCUAAGAUCCUGCUUGUUGUAAGЖCUCCGUUUAAUUUCCAGAAGCAGCAGCCACUGUUGCUGCCACUGACCACCAGGUAGACAGCGCAAUCUGUGGAGCUUUUACUCUGUUGUGAGGGGAAGAGЖCUGCAUUGUGGCCCCAGЖCUUUUAAAACAGCACUAAAUAЖCUUGGGGGAAACGGGGGGAGGGAAAAUGAAAUGAAAACCCUGUUGCUGCGUCACUGUGUUCCCUUUGGCCUGGCUGAGUUUGAUACUGUGGGGAUUCAGUUUAGGCGCUGGCCCGAGGAUAUCCCAGCGGUGGUACUUCGGAGACACCUGUCUGCAUCUGACUGAGCAGAACAAAUCGUCAGGUGCCUGGAGCAAAAAGGAAAAAAAAAAAAGAAAGGЖCAUUGAGUU
Sequence (SHORT NAMES ENCODING)	GUGCUGACGCCAUGACGCCCCGGCUGGUGUGUGUCGGUGUGUAUGUGUGUGUGUGAGUGUGCGCGCUCCGAGUGUGUGUGUAUUUGUGUAUCGGCGGUCCCGCAGGUCCCGGAUGUUGCGGACAGUAUGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCUGUCGCCGCCGCUCUCAGGCUCUGGGAACCACCCUUCUACUUUCUGUCUCUAGGAAUUUCACUACUCUAGAGAUUUCCUGUUAGACAAGACAAAUUAGAGUUUUCCUACUGACUUAACUUGGGUGAAGAGGGAACAGAAAUCUUUGCCCCCUGACUUUGGAAAUCUCGUUUAACCUUCAAACUGGCGAUGUCAAGGGUUCCAAGUCCYCCACCYCCGGCAGAAAUGUCGAGUGGCCCCGUAGCUGAGAGUUGGUGCUACACACAGAUCAAGGUAGUGAAAUUCUCCUACAUGUGGACCAUCAAUAACUYUAGCUUUUGCCGGGAGGAAAUGGGUGAAGUCAUUAAAAGUUCUACAUUUUCAUCAGGAGCAAAUGAUAAACUGAAAUGGUGUUUGCGAGUAAACCCCAAAGGGUUAGAUGAAGAAAGCAAAGAUUACCUGUCACUYUACCUGUUACUGGUCAGCUGUCCAAAGAGUGAAGUUCGGGCAAAAUUCAAAUUCUCCAYCCUGAAUGCCAAGGGAGAAGAAACCAAAGCUAUGGAGAGUCAACGGGCAUAUAGGUUUGUGCAAGGCAAAGACUGGGGAUUCAAGAAAUUCAYCCGUAGAGAUUUUCUUUUGGAUGAGGCCAACGGGCUUCUCCCUGAUGm6ACAAGCUUACCCUCUUCUGCGAGGUGAGUGUUGUGCAAGAUUCUGUCAACAUUUCUGGCCAGAAUACCAUGAACAUGGUAAAGGUUCCUGAGUGCCGGCUGGCAGAUGAGUUAGGAGGACUGUGGGAGAAUUCCCGGUUCACAGACUGCUGCUUGUGUGUUGCCGGCCAGGAAUUCCAGGCUCACAAGGCUAUCUUAGCAGCUCGUUCUCCGGUUUUUAGUGCCAUGUUUGAACAUGAAAUGGAGGAGAGCAAAAAGAAUCGAGUUGAAAUCAAUGAUGUGGAGCCUGAAGUUUUUAAGGAAAUGAUGUGCUUCAUUUACACGGGGAAGGCUCCAAACCUCGACAAAAUGGCUGAUGAUYUGCUGGCAGCUGCUGACAAGUAUGCCCUGGAGCGCUUAAAGGUCAUGUGUGAGGAUGCCCUCUGCAGUAACCUGUCCGUGGAGAACGCUGCAGAAAUUCUCAYCCUGGCCGACCUCCACAGUGCAGAUCAGUUGAAAACUCAGGCAGUGGAUUUCAUCAACUAUCAUGCUUCGGAUGUCUUGGAGACCUCUGGGUGGAAGUCAAUGGUGGUGUCACAYCCCCACUUGGUGGCUGAGGCAUACCGCUCUCUGGCUUCAGCACAGUGCCCUUUUCUGGGACCCCCACGCAAACGCCUGAAGCAAUCCUAAGAUCCUGCUUGUUGUAAGm6ACUCCGUUUAAUUUCCAGAAGCAGCAGCCACUGUUGCUGCCACUGACCACCAGGUAGACAGCGCAAUCUGUGGAGCUUUUACUCUGUUGUGAGGGGAAGAGm6ACUGCAUUGUGGCCCCAGm6ACUUUUAAAACAGCACUAAAUAm6ACUUGGGGGAAACGGGGGGAGGGAAAAUGAAAUGAAAACCCUGUUGCUGCGUCACUGUGUUCCCUUUGGCCUGGCUGAGUUUGAUACUGUGGGGAUUCAGUUUAGGCGCUGGCCCGAGGAUAUCCCAGCGGUGGUACUUCGGAGACACCUGUCUGCAUCUGACUGAGCAGAACAAAUCGUCAGGUGCCUGGAGCAAAAAGGAAAAAAAAAAAAGAAAGGm6ACAUUGAGUU
Sequence (MODOMICS CODE ENCODING)	GUGCUGACGCCAUGACGCCCCGGCUGGUGUGUGUCGGUGUGUAUGUGUGUGUGUGAGUGUGCGCGCUCCGAGUGUGUGUGUAUUUGUGUAUCGGCGGUCCCGCAGGUCCCGGAUGUUGCGGACAGUAUGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCUGUCGCCGCCGCUCUCAGGCUCUGGGAACCACCCUUCUACUUUCUGUCUCUAGGAAUUUCACUACUCUAGAGAUUUCCUGUUAGACAAGACAAAUUAGAGUUUUCCUACUGACUUAACUUGGGUGAAGAGGGAACAGAAAUCUUUGCCCCCUGACUUUGGAAAUCUCGUUUAACCUUCAAACUGGCGAUGUCAAGGGUUCCAAGUCC2000000009UCCACC2000000009UCCGGCAGAAAUGUCGAGUGGCCCCGUAGCUGAGAGUUGGUGCUACACACAGAUCAAGGUAGUGAAAUUCUCCUACAUGUGGACCAUCAAUAACU2000000009UUAGCUUUUGCCGGGAGGAAAUGGGUGAAGUCAUUAAAAGUUCUACAUUUUCAUCAGGAGCAAAUGAUAAACUGAAAUGGUGUUUGCGAGUAAACCCCAAAGGGUUAGAUGAAGAAAGCAAAGAUUACCUGUCACU2000000009UUACCUGUUACUGGUCAGCUGUCCAAAGAGUGAAGUUCGGGCAAAAUUCAAAUUCUCCA2000000009UCCUGAAUGCCAAGGGAGAAGAAACCAAAGCUAUGGAGAGUCAACGGGCAUAUAGGUUUGUGCAAGGCAAAGACUGGGGAUUCAAGAAAUUCA2000000009UCCGUAGAGAUUUUCUUUUGGAUGAGGCCAACGGGCUUCUCCCUGAUG2000000006ACAAGCUUACCCUCUUCUGCGAGGUGAGUGUUGUGCAAGAUUCUGUCAACAUUUCUGGCCAGAAUACCAUGAACAUGGUAAAGGUUCCUGAGUGCCGGCUGGCAGAUGAGUUAGGAGGACUGUGGGAGAAUUCCCGGUUCACAGACUGCUGCUUGUGUGUUGCCGGCCAGGAAUUCCAGGCUCACAAGGCUAUCUUAGCAGCUCGUUCUCCGGUUUUUAGUGCCAUGUUUGAACAUGAAAUGGAGGAGAGCAAAAAGAAUCGAGUUGAAAUCAAUGAUGUGGAGCCUGAAGUUUUUAAGGAAAUGAUGUGCUUCAUUUACACGGGGAAGGCUCCAAACCUCGACAAAAUGGCUGAUGAU2000000009UUGCUGGCAGCUGCUGACAAGUAUGCCCUGGAGCGCUUAAAGGUCAUGUGUGAGGAUGCCCUCUGCAGUAACCUGUCCGUGGAGAACGCUGCAGAAAUUCUCA2000000009UCCUGGCCGACCUCCACAGUGCAGAUCAGUUGAAAACUCAGGCAGUGGAUUUCAUCAACUAUCAUGCUUCGGAUGUCUUGGAGACCUCUGGGUGGAAGUCAAUGGUGGUGUCACA2000000009UCCCCACUUGGUGGCUGAGGCAUACCGCUCUCUGGCUUCAGCACAGUGCCCUUUUCUGGGACCCCCACGCAAACGCCUGAAGCAAUCCUAAGAUCCUGCUUGUUGUAAG2000000006ACUCCGUUUAAUUUCCAGAAGCAGCAGCCACUGUUGCUGCCACUGACCACCAGGUAGACAGCGCAAUCUGUGGAGCUUUUACUCUGUUGUGAGGGGAAGAG2000000006ACUGCAUUGUGGCCCCAG2000000006ACUUUUAAAACAGCACUAAAUA2000000006ACUUGGGGGAAACGGGGGGAGGGAAAAUGAAAUGAAAACCCUGUUGCUGCGUCACUGUGUUCCCUUUGGCCUGGCUGAGUUUGAUACUGUGGGGAUUCAGUUUAGGCGCUGGCCCGAGGAUAUCCCAGCGGUGGUACUUCGGAGACACCUGUCUGCAUCUGACUGAGCAGAACAAAUCGUCAGGUGCCUGGAGCAAAAAGGAAAAAAAAAAAAGAAAGG2000000006ACAUUGAGUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	368	374	469	605	664	757	805	1164	1267	1382	1491	1592	1610	1632	1851
Modification Positions	Y	Y	Y	Y	Y	Y	m6A	Y	Y	Y	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	17:49622790:-	17:49622784:-	17:49622024:-	17:49619328:-	17:49619269:-	17:49619051:-	17:49619003:-	17:49607270:-	17:49601925:-	17:49600468:-	17:49600359:-	17:49600258:-	17:49600240:-	17:49600218:-	17:49599999:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5FhTyQVy2tKW 6AyXsheySjfx Ap2q43bQLNek msuJfBpJvM5H nGifePrmgHfe VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	aJksAshEgQ8U D6ncpa2PPWj3 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8