Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000619299
Gene ID: ENSG00000273559
Gene Name: CWC25
Sequence (UNICHARACTER ENCODING) GUGGUGAAACUGGCAGUUGACGGCUCCUGGGACUAGAUCCCGCGAGGUAGCCCCCGAACUAUUUCUCUACGUUUUCUCUUGAUCCUCCCGAAAUCUUCCAGAUCCGCGUAGUGAGGAAUCGUCUCCACCGUCAUGGGGGGCGGAGACCUGAAUCUGAAGAAGAGCUGGCACCCGCAGACCCUCAGGAAUGUGGAGAAAGUGUGGAAGGCCGAGCAGAAGCAUGAGGCUGAGCGGAAGAAGAUUGAGGAGCUUCAGCGGGAGCUGCGAGAAGAGAGAGCCCGGGAAGAGAUGCAGCGCUAUGCGGAGGAUGUUGGGGCCGUCAAGUCAUCUUGGAAAUGAAAGCAUAAUAUAAAGACUCUGUAAAGGAGACUCGAGAAGCUCUGAGCCAAGAUCCACACCCCAUGUUGAGGAACACUGGUUUUCCUUAUAAAUUGCUUUAUGAAAAAAGAAGAAAAGUUGGACUGGAUGUACCAGGGUCCUGGUGGGAUGGUGAACCGUGACGAGUACCUGCUGGGGCGCCCCAUUGACAAAUAUGUUUUUGAGAAGAUGGAGGAGAAGGAGGCAGGCUGCUCUUCUGAAACAGGACUUCUCCCAGGCUCUAUCUUUGCCCCAUCAGGUGCCAAUUCCCUUCUUGACAUGGCCAGCAAGAUCCGGGAGGACCCACUCUUCAUCAUCAGGAAGAAGGAGGAGGAGAAAAAACGAGAGGUAUUAAAUAAUCCAGUGAAAAUGAAGAAAAUCAAAGAAUUGUUGCAAAUGAGUCUGGAAAAAAAGGAGAAGAAGAAAAAGAAGGAGAAGAAAAAGAAGCACAAGAAACAUAAGCACAGAAGCUCGAGUAGUGAUCGUUCCAGCAGCGAGGAUGAGCACAGUGCAGGGAGAUCACAGAAGAAGAUGGCAAAUUCCUCCCCUGUUUUGUCCAAAGUCCCUGGAUAUGGCUUACAGGUCCGGAACUCUGACCGUAACCAGGGUCUUCAGGGUCCUCUGACAGCAGAGCAAAAGAGAGGGCAUGGGAUGAAGAACCAUUCCAGAUCCAGAAGCUCCUCCCACUCACCCCCAAGACAUGCCAGCAAGAAGAGCACCAGGGAAGCAGGGUCCCGGGACAGGAGGUCUCGAUCCCUGGGCAGAAGGUCACGGUCCCCAAGACCCAGCAAACUGCACAACUCUAAGGUGAACAGGAGAGAGACAGGCCAAACUAGGAGCCCAUCACCUAAAAAAGAGGUCUACCAAAGGCGACAUGCUCCCGGAUACACCAGAAAACUCUCUGCAGAGGAAUUAGAGCGAAAACGGCAAGAGAUGAUGGAAAACGCCAAAUGGAGGGAGGAGGAGAGACUGAACAPCCUCAAGAGGCAUGCUAAGGAUGAGGAACGGGAGCAGAGGCUAGAGAAGCUGGACUCCCGGGAUGGGAAGUUCAUCCACCGCAUGAAGCUGGAGAGUGCAUCUACUUCCUCCCUGGAGGAUCGGGUGAAGCGGAAUAUCUACUCUUUACAGAGAACUUCGGUAGCUCUGGAGAAGAACUPUAUGAAAAGAUGAAAACUGUCCCCUCUCUUAUUGGUUUUCCUGCAUUUUCCAGGGAAGCUGCUGACCCCUUAAUUCUCUUUAUAAGAGUUCAAAUGACUUCUUUCACAGAUGUCAAACCACCAGUGUUCAAAGUGACCCUGCUUCAUUGAGUCCUGAAACAGCUCACUUCCUUUGAGAGCUAGUGUGACUUGCUUUGUGGGЖCACUCAGUAЖCUUUGGGUUUUGACUCUUUAACGGGUGGGCACUGGACCAUCUCGGUGGGAGUGCUUGUGCCACUCUGGAAGGCUGUUCCCUGGGGUUGUGAUGUUUAUCAUGCCACUUCCUUCUUACCUGUGCCAACAGЖCCUAUUUCACUGCCUCAGCGUACACCAGACCCUUCAGA
Sequence (SHORT NAMES ENCODING) GUGGUGAAACUGGCAGUUGACGGCUCCUGGGACUAGAUCCCGCGAGGUAGCCCCCGAACUAUUUCUCUACGUUUUCUCUUGAUCCUCCCGAAAUCUUCCAGAUCCGCGUAGUGAGGAAUCGUCUCCACCGUCAUGGGGGGCGGAGACCUGAAUCUGAAGAAGAGCUGGCACCCGCAGACCCUCAGGAAUGUGGAGAAAGUGUGGAAGGCCGAGCAGAAGCAUGAGGCUGAGCGGAAGAAGAUUGAGGAGCUUCAGCGGGAGCUGCGAGAAGAGAGAGCCCGGGAAGAGAUGCAGCGCUAUGCGGAGGAUGUUGGGGCCGUCAAGUCAUCUUGGAAAUGAAAGCAUAAUAUAAAGACUCUGUAAAGGAGACUCGAGAAGCUCUGAGCCAAGAUCCACACCCCAUGUUGAGGAACACUGGUUUUCCUUAUAAAUUGCUUUAUGAAAAAAGAAGAAAAGUUGGACUGGAUGUACCAGGGUCCUGGUGGGAUGGUGAACCGUGACGAGUACCUGCUGGGGCGCCCCAUUGACAAAUAUGUUUUUGAGAAGAUGGAGGAGAAGGAGGCAGGCUGCUCUUCUGAAACAGGACUUCUCCCAGGCUCUAUCUUUGCCCCAUCAGGUGCCAAUUCCCUUCUUGACAUGGCCAGCAAGAUCCGGGAGGACCCACUCUUCAUCAUCAGGAAGAAGGAGGAGGAGAAAAAACGAGAGGUAUUAAAUAAUCCAGUGAAAAUGAAGAAAAUCAAAGAAUUGUUGCAAAUGAGUCUGGAAAAAAAGGAGAAGAAGAAAAAGAAGGAGAAGAAAAAGAAGCACAAGAAACAUAAGCACAGAAGCUCGAGUAGUGAUCGUUCCAGCAGCGAGGAUGAGCACAGUGCAGGGAGAUCACAGAAGAAGAUGGCAAAUUCCUCCCCUGUUUUGUCCAAAGUCCCUGGAUAUGGCUUACAGGUCCGGAACUCUGACCGUAACCAGGGUCUUCAGGGUCCUCUGACAGCAGAGCAAAAGAGAGGGCAUGGGAUGAAGAACCAUUCCAGAUCCAGAAGCUCCUCCCACUCACCCCCAAGACAUGCCAGCAAGAAGAGCACCAGGGAAGCAGGGUCCCGGGACAGGAGGUCUCGAUCCCUGGGCAGAAGGUCACGGUCCCCAAGACCCAGCAAACUGCACAACUCUAAGGUGAACAGGAGAGAGACAGGCCAAACUAGGAGCCCAUCACCUAAAAAAGAGGUCUACCAAAGGCGACAUGCUCCCGGAUACACCAGAAAACUCUCUGCAGAGGAAUUAGAGCGAAAACGGCAAGAGAUGAUGGAAAACGCCAAAUGGAGGGAGGAGGAGAGACUGAACAYCCUCAAGAGGCAUGCUAAGGAUGAGGAACGGGAGCAGAGGCUAGAGAAGCUGGACUCCCGGGAUGGGAAGUUCAUCCACCGCAUGAAGCUGGAGAGUGCAUCUACUUCCUCCCUGGAGGAUCGGGUGAAGCGGAAUAUCUACUCUUUACAGAGAACUUCGGUAGCUCUGGAGAAGAACUYUAUGAAAAGAUGAAAACUGUCCCCUCUCUUAUUGGUUUUCCUGCAUUUUCCAGGGAAGCUGCUGACCCCUUAAUUCUCUUUAUAAGAGUUCAAAUGACUUCUUUCACAGAUGUCAAACCACCAGUGUUCAAAGUGACCCUGCUUCAUUGAGUCCUGAAACAGCUCACUUCCUUUGAGAGCUAGUGUGACUUGCUUUGUGGGm6ACACUCAGUAm6ACUUUGGGUUUUGACUCUUUAACGGGUGGGCACUGGACCAUCUCGGUGGGAGUGCUUGUGCCACUCUGGAAGGCUGUUCCCUGGGGUUGUGAUGUUUAUCAUGCCACUUCCUUCUUACCUGUGCCAACAGm6ACCUAUUUCACUGCCUCAGCGUACACCAGACCCUUCAGA
Sequence (MODOMICS CODE ENCODING) GUGGUGAAACUGGCAGUUGACGGCUCCUGGGACUAGAUCCCGCGAGGUAGCCCCCGAACUAUUUCUCUACGUUUUCUCUUGAUCCUCCCGAAAUCUUCCAGAUCCGCGUAGUGAGGAAUCGUCUCCACCGUCAUGGGGGGCGGAGACCUGAAUCUGAAGAAGAGCUGGCACCCGCAGACCCUCAGGAAUGUGGAGAAAGUGUGGAAGGCCGAGCAGAAGCAUGAGGCUGAGCGGAAGAAGAUUGAGGAGCUUCAGCGGGAGCUGCGAGAAGAGAGAGCCCGGGAAGAGAUGCAGCGCUAUGCGGAGGAUGUUGGGGCCGUCAAGUCAUCUUGGAAAUGAAAGCAUAAUAUAAAGACUCUGUAAAGGAGACUCGAGAAGCUCUGAGCCAAGAUCCACACCCCAUGUUGAGGAACACUGGUUUUCCUUAUAAAUUGCUUUAUGAAAAAAGAAGAAAAGUUGGACUGGAUGUACCAGGGUCCUGGUGGGAUGGUGAACCGUGACGAGUACCUGCUGGGGCGCCCCAUUGACAAAUAUGUUUUUGAGAAGAUGGAGGAGAAGGAGGCAGGCUGCUCUUCUGAAACAGGACUUCUCCCAGGCUCUAUCUUUGCCCCAUCAGGUGCCAAUUCCCUUCUUGACAUGGCCAGCAAGAUCCGGGAGGACCCACUCUUCAUCAUCAGGAAGAAGGAGGAGGAGAAAAAACGAGAGGUAUUAAAUAAUCCAGUGAAAAUGAAGAAAAUCAAAGAAUUGUUGCAAAUGAGUCUGGAAAAAAAGGAGAAGAAGAAAAAGAAGGAGAAGAAAAAGAAGCACAAGAAACAUAAGCACAGAAGCUCGAGUAGUGAUCGUUCCAGCAGCGAGGAUGAGCACAGUGCAGGGAGAUCACAGAAGAAGAUGGCAAAUUCCUCCCCUGUUUUGUCCAAAGUCCCUGGAUAUGGCUUACAGGUCCGGAACUCUGACCGUAACCAGGGUCUUCAGGGUCCUCUGACAGCAGAGCAAAAGAGAGGGCAUGGGAUGAAGAACCAUUCCAGAUCCAGAAGCUCCUCCCACUCACCCCCAAGACAUGCCAGCAAGAAGAGCACCAGGGAAGCAGGGUCCCGGGACAGGAGGUCUCGAUCCCUGGGCAGAAGGUCACGGUCCCCAAGACCCAGCAAACUGCACAACUCUAAGGUGAACAGGAGAGAGACAGGCCAAACUAGGAGCCCAUCACCUAAAAAAGAGGUCUACCAAAGGCGACAUGCUCCCGGAUACACCAGAAAACUCUCUGCAGAGGAAUUAGAGCGAAAACGGCAAGAGAUGAUGGAAAACGCCAAAUGGAGGGAGGAGGAGAGACUGAACA2000000009UCCUCAAGAGGCAUGCUAAGGAUGAGGAACGGGAGCAGAGGCUAGAGAAGCUGGACUCCCGGGAUGGGAAGUUCAUCCACCGCAUGAAGCUGGAGAGUGCAUCUACUUCCUCCCUGGAGGAUCGGGUGAAGCGGAAUAUCUACUCUUUACAGAGAACUUCGGUAGCUCUGGAGAAGAACU2000000009UUAUGAAAAGAUGAAAACUGUCCCCUCUCUUAUUGGUUUUCCUGCAUUUUCCAGGGAAGCUGCUGACCCCUUAAUUCUCUUUAUAAGAGUUCAAAUGACUUCUUUCACAGAUGUCAAACCACCAGUGUUCAAAGUGACCCUGCUUCAUUGAGUCCUGAAACAGCUCACUUCCUUUGAGAGCUAGUGUGACUUGCUUUGUGGG2000000006ACACUCAGUA2000000006ACUUUGGGUUUUGACUCUUUAACGGGUGGGCACUGGACCAUCUCGGUGGGAGUGCUUGUGCCACUCUGGAAGGCUGUUCCCUGGGGUUGUGAUGUUUAUCAUGCCACUUCCUUCUUACCUGUGCCAACAG2000000006ACCUAUUUCACUGCCUCAGCGUACACCAGACCCUUCAGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1334 1514 1716 1726 1856
Modification Positions Y Y m6A m6A m6A
Genomic Coordinates 17:38802778:- 17:38802105:- 17:38801903:- 17:38801893:- 17:38801763:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
Q36pf44ZRvxu
8cMbzB4aD5Se
93arJtwJmuS9
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr