General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000394114
Gene ID:	ENSG00000108349
Gene Name:	CASC3
Sequence (UNICHARACTER ENCODING)	GUUUUUCUAGAUACACAUUCUUUAAUUCAGACAGGAAUGUGGUAUGGGGAGAAUGCUAAAGGAAUUUGAGAGAACAUUUUCAGUGCCACUGAUUUGUAUGUGACACCAAGACGCCUCUUAGUGGUCAGGAGCUGGAAAUGCAGCUUAUGUAAUGCCCAUCAUCUUUAUUCUUUUCAGUUUUUUUCUCCGUUGCCCAGGCUUGGAGUGCAGUGGCGUGAUCUCGGUUCACUGUAACCUCCACCUCUUGGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGUGCCUGCCACCAUGCCCGGCUAGUUUUUGUAUUUCUAGUAGAGAUGGCGUUUCACCAUGUUGGCCAAGCUGGUCUCAAACUCCUGACCUCAACCGAUCCACCUGCCUCGGCCUCCGAAAGUGCUGGGAUUACAGGCAUAAGCCACCGCACCCAGCGUUCAGUUUCUUUAAUGGUGUUUCUUUCCUGUGUUGUGGUACAUCAUAGGUGGCAAUACCUGGUUUUUACUCUAUUGCAUAAAGAAGCUGUAUUCUACUCCUUAUCACCCCUACCUCUGUCCUGCUUAACUUCCACCACGUUGACAUAAUCAAGUAUCUGUAGUGUCGCUACUGAACUCAGCCUUUUCCAUUUGUCAGCUGAUGGUAGGAAUUAGAGAAAGCUGGGCAGUACUUUGAAGAAAUAAAAACCAGAGCAUAAUAAUGAAGAAUUAAGGCAAAAAUGAAUAGUCACUUUAUUUUGAAGGGUGGGCAGAUUAGAUAUUUUUAAAAUUAUAAAUUCCCCAAUUCUCUUAUGGCUGAAUAAUAUUUCCUGUUCAUCAUAGGUUGGAUGAAUUCAUUCCUAACUUUUUCUUCUCCUGGCUUGUGGGGUCCCAGGCCCCAUCACAGGUAUAUGGAGGAGUGACCUACUAUAACCCCGCCCAGCAGCAGGUGCAGCCAAAGCCCUCCCCACCCCGGAGGACUCCCCAGCCAGUCACCAUCAAGCCCCCUCCACCUGAGGUUGUAAGCAGGGGUUCCAGUUAAUACAAGUUUCUGAAUAUUUUAAAUCUUAACAUCAUAUAAAAAGCAGCAGAGGUGAGAACUCAGAAGAGAAAUACAGCUGGCUAUCUACUACCAGAAGGGCUUCAAAGAUAUAGGGUGUGGCUCCUACCAGCAAЖCAGCUGAAAGAGGAGGACCCCUGCCUUCCUCUGAGGЖCAGGCUCUAGAGAGAGGGAGAAACAAGUGGACCUCGUCCCAUCUUCACUCUUCACUUGAGUUGGCUGUGUUCGGGGGAGCAGAGAGAGCCAGACAGCCCCAAGCUUCUGAGUCUAGAUACAGAAGCCCAUGUCUUCUGCUGUUCUUCACUUCUGGGAAAUUGAAGUGUCUUCUGUUCCCAAGGAAGCUCCUUCCUGUUUGUUUUGUUUUCUAAGAUGUUCAUUUUUAAAGCCUGGCUUCUUAUCCUUAAUAUUAUUUUAAUUUUUUCUCUUUGUUUCUGUUUCUUGCUCUCUCUCCCUGCCUPUAAAUGAAЖCAAGUCUAGUCUUCUGGUUUUCUAGCCCCUCUGGAUUCCCUUUUGACUCUUCCGUGCAPCCCAGAUAAUGGAGAAUGUAUCAGCCAGCCUUCCCCACCAAGUCUAAAЖAGACCUGGCCUUUCACUUUUAGUUGGCAUUUGUUAUCCUCUUGUAUACUUGUAUUCCCUUAЖCUCUAACCCUGUGGAAGCAUGGCUGUCUGCACAGAGGGUCCCAUUGUGCAGAAAAGCUCAGAGUAGGUGGGUAGGAGCCCUUCUCUUUGACUUAGGUUUUUAGGAGUCUGAGCAPCCAUCAAUACCUGUACUAUGAUGGGCUUCUGUUCUCUGCUGAGGGCCAAUACCCUACUGUGGGGAGAGAUGGCACACCAGAUGCUUUUGUGAGAAAGGGAUGGUGGAGUGAGAGCCUUUGCCUPUAGGGGUGUGUAUUCACAUAGUCCUCAGGGCUCAGUCUUUUGAGGUAAGUGGAAUUAGAGGGCCUUGCUUCUCUUCUUUCCAUUCUUCUUGCUACACCCCUUUUCCAGUUGCUGUGGACCAAUGCAUCUCUPUAAAGGCAAAUAUUAUCCAGCAAGCAGUCUACCCUGUCCUUUGCAAUUGCUCUUCUCCACGUCUUUCCUGCUACAAGUGUUUUAGAUGUUACUACCUUAUUUUCCCCGAAUUCUAUUUUUGUCCUUGCAGACAGAAUAUAAAAACUCCUGGGCUUAAGGCCUAAGGAAGCCAGUCACCUUCUGGGCAAGGGCUCCUAUCUUUCCUCCCUAUCCAUGGCACUAAЖCCACUUCUCUGCUGCCUCUGUGGAAGAGAUUCCUAUUACUGCAGUACAUACGUCUGCCAGGGGUAACCUGGCCACUGUCCCUGUCCUUCUACЖGAACCUGAGGGCAAAGAUGGUGGCUGUGUCUCUCCCCGGUAAUGUCACUGUUUUUAUUCCUUCCAUCUAGCAGCUGGCCUAAUCACUCUGAGUCACAGGUGUGGGAUGGAGAGUGGGGAGAGGCACUUAAUCUGUAACCCCCAAGGAGGAAAUAACUAAGAGAUUCUUCUAGGGGUAGCUGGUGGUUGUGCCUUUUGUAGGCUGUUCCCUUUGCCUUAAЖCCUGAAGAUGUCUCCUCAAGCCUGUGGGCAGCAUGCCCAGAUUCCCAGACCUUAAGACACUGUGAGAGUUGUCUCUGUUGGUCCACUGUGUUUAGUUGCAAGGAUUUUUCCAUGUGUGGUGGUGUUUUUUGUUACUGUUUUAAAGGGUGCCCAUUUGUGAUCAGCAUUGUGACUUGGAGAUAAUAAAAUUUAGACUAU
Sequence (SHORT NAMES ENCODING)	GUUUUUCUAGAUACACAUUCUUUAAUUCAGACAGGAAUGUGGUAUGGGGAGAAUGCUAAAGGAAUUUGAGAGAACAUUUUCAGUGCCACUGAUUUGUAUGUGACACCAAGACGCCUCUUAGUGGUCAGGAGCUGGAAAUGCAGCUUAUGUAAUGCCCAUCAUCUUUAUUCUUUUCAGUUUUUUUCUCCGUUGCCCAGGCUUGGAGUGCAGUGGCGUGAUCUCGGUUCACUGUAACCUCCACCUCUUGGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGUGCCUGCCACCAUGCCCGGCUAGUUUUUGUAUUUCUAGUAGAGAUGGCGUUUCACCAUGUUGGCCAAGCUGGUCUCAAACUCCUGACCUCAACCGAUCCACCUGCCUCGGCCUCCGAAAGUGCUGGGAUUACAGGCAUAAGCCACCGCACCCAGCGUUCAGUUUCUUUAAUGGUGUUUCUUUCCUGUGUUGUGGUACAUCAUAGGUGGCAAUACCUGGUUUUUACUCUAUUGCAUAAAGAAGCUGUAUUCUACUCCUUAUCACCCCUACCUCUGUCCUGCUUAACUUCCACCACGUUGACAUAAUCAAGUAUCUGUAGUGUCGCUACUGAACUCAGCCUUUUCCAUUUGUCAGCUGAUGGUAGGAAUUAGAGAAAGCUGGGCAGUACUUUGAAGAAAUAAAAACCAGAGCAUAAUAAUGAAGAAUUAAGGCAAAAAUGAAUAGUCACUUUAUUUUGAAGGGUGGGCAGAUUAGAUAUUUUUAAAAUUAUAAAUUCCCCAAUUCUCUUAUGGCUGAAUAAUAUUUCCUGUUCAUCAUAGGUUGGAUGAAUUCAUUCCUAACUUUUUCUUCUCCUGGCUUGUGGGGUCCCAGGCCCCAUCACAGGUAUAUGGAGGAGUGACCUACUAUAACCCCGCCCAGCAGCAGGUGCAGCCAAAGCCCUCCCCACCCCGGAGGACUCCCCAGCCAGUCACCAUCAAGCCCCCUCCACCUGAGGUUGUAAGCAGGGGUUCCAGUUAAUACAAGUUUCUGAAUAUUUUAAAUCUUAACAUCAUAUAAAAAGCAGCAGAGGUGAGAACUCAGAAGAGAAAUACAGCUGGCUAUCUACUACCAGAAGGGCUUCAAAGAUAUAGGGUGUGGCUCCUACCAGCAAm6ACAGCUGAAAGAGGAGGACCCCUGCCUUCCUCUGAGGm6ACAGGCUCUAGAGAGAGGGAGAAACAAGUGGACCUCGUCCCAUCUUCACUCUUCACUUGAGUUGGCUGUGUUCGGGGGAGCAGAGAGAGCCAGACAGCCCCAAGCUUCUGAGUCUAGAUACAGAAGCCCAUGUCUUCUGCUGUUCUUCACUUCUGGGAAAUUGAAGUGUCUUCUGUUCCCAAGGAAGCUCCUUCCUGUUUGUUUUGUUUUCUAAGAUGUUCAUUUUUAAAGCCUGGCUUCUUAUCCUUAAUAUUAUUUUAAUUUUUUCUCUUUGUUUCUGUUUCUUGCUCUCUCUCCCUGCCUYUAAAUGAAm6ACAAGUCUAGUCUUCUGGUUUUCUAGCCCCUCUGGAUUCCCUUUUGACUCUUCCGUGCAYCCCAGAUAAUGGAGAAUGUAUCAGCCAGCCUUCCCCACCAAGUCUAAAm6AAGACCUGGCCUUUCACUUUUAGUUGGCAUUUGUUAUCCUCUUGUAUACUUGUAUUCCCUUAm6ACUCUAACCCUGUGGAAGCAUGGCUGUCUGCACAGAGGGUCCCAUUGUGCAGAAAAGCUCAGAGUAGGUGGGUAGGAGCCCUUCUCUUUGACUUAGGUUUUUAGGAGUCUGAGCAYCCAUCAAUACCUGUACUAUGAUGGGCUUCUGUUCUCUGCUGAGGGCCAAUACCCUACUGUGGGGAGAGAUGGCACACCAGAUGCUUUUGUGAGAAAGGGAUGGUGGAGUGAGAGCCUUUGCCUYUAGGGGUGUGUAUUCACAUAGUCCUCAGGGCUCAGUCUUUUGAGGUAAGUGGAAUUAGAGGGCCUUGCUUCUCUUCUUUCCAUUCUUCUUGCUACACCCCUUUUCCAGUUGCUGUGGACCAAUGCAUCUCUYUAAAGGCAAAUAUUAUCCAGCAAGCAGUCUACCCUGUCCUUUGCAAUUGCUCUUCUCCACGUCUUUCCUGCUACAAGUGUUUUAGAUGUUACUACCUUAUUUUCCCCGAAUUCUAUUUUUGUCCUUGCAGACAGAAUAUAAAAACUCCUGGGCUUAAGGCCUAAGGAAGCCAGUCACCUUCUGGGCAAGGGCUCCUAUCUUUCCUCCCUAUCCAUGGCACUAAm6ACCACUUCUCUGCUGCCUCUGUGGAAGAGAUUCCUAUUACUGCAGUACAUACGUCUGCCAGGGGUAACCUGGCCACUGUCCCUGUCCUUCUACm6AGAACCUGAGGGCAAAGAUGGUGGCUGUGUCUCUCCCCGGUAAUGUCACUGUUUUUAUUCCUUCCAUCUAGCAGCUGGCCUAAUCACUCUGAGUCACAGGUGUGGGAUGGAGAGUGGGGAGAGGCACUUAAUCUGUAACCCCCAAGGAGGAAAUAACUAAGAGAUUCUUCUAGGGGUAGCUGGUGGUUGUGCCUUUUGUAGGCUGUUCCCUUUGCCUUAAm6ACCUGAAGAUGUCUCCUCAAGCCUGUGGGCAGCAUGCCCAGAUUCCCAGACCUUAAGACACUGUGAGAGUUGUCUCUGUUGGUCCACUGUGUUUAGUUGCAAGGAUUUUUCCAUGUGUGGUGGUGUUUUUUGUUACUGUUUUAAAGGGUGCCCAUUUGUGAUCAGCAUUGUGACUUGGAGAUAAUAAAAUUUAGACUAU
Sequence (MODOMICS CODE ENCODING)	GUUUUUCUAGAUACACAUUCUUUAAUUCAGACAGGAAUGUGGUAUGGGGAGAAUGCUAAAGGAAUUUGAGAGAACAUUUUCAGUGCCACUGAUUUGUAUGUGACACCAAGACGCCUCUUAGUGGUCAGGAGCUGGAAAUGCAGCUUAUGUAAUGCCCAUCAUCUUUAUUCUUUUCAGUUUUUUUCUCCGUUGCCCAGGCUUGGAGUGCAGUGGCGUGAUCUCGGUUCACUGUAACCUCCACCUCUUGGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGUGCCUGCCACCAUGCCCGGCUAGUUUUUGUAUUUCUAGUAGAGAUGGCGUUUCACCAUGUUGGCCAAGCUGGUCUCAAACUCCUGACCUCAACCGAUCCACCUGCCUCGGCCUCCGAAAGUGCUGGGAUUACAGGCAUAAGCCACCGCACCCAGCGUUCAGUUUCUUUAAUGGUGUUUCUUUCCUGUGUUGUGGUACAUCAUAGGUGGCAAUACCUGGUUUUUACUCUAUUGCAUAAAGAAGCUGUAUUCUACUCCUUAUCACCCCUACCUCUGUCCUGCUUAACUUCCACCACGUUGACAUAAUCAAGUAUCUGUAGUGUCGCUACUGAACUCAGCCUUUUCCAUUUGUCAGCUGAUGGUAGGAAUUAGAGAAAGCUGGGCAGUACUUUGAAGAAAUAAAAACCAGAGCAUAAUAAUGAAGAAUUAAGGCAAAAAUGAAUAGUCACUUUAUUUUGAAGGGUGGGCAGAUUAGAUAUUUUUAAAAUUAUAAAUUCCCCAAUUCUCUUAUGGCUGAAUAAUAUUUCCUGUUCAUCAUAGGUUGGAUGAAUUCAUUCCUAACUUUUUCUUCUCCUGGCUUGUGGGGUCCCAGGCCCCAUCACAGGUAUAUGGAGGAGUGACCUACUAUAACCCCGCCCAGCAGCAGGUGCAGCCAAAGCCCUCCCCACCCCGGAGGACUCCCCAGCCAGUCACCAUCAAGCCCCCUCCACCUGAGGUUGUAAGCAGGGGUUCCAGUUAAUACAAGUUUCUGAAUAUUUUAAAUCUUAACAUCAUAUAAAAAGCAGCAGAGGUGAGAACUCAGAAGAGAAAUACAGCUGGCUAUCUACUACCAGAAGGGCUUCAAAGAUAUAGGGUGUGGCUCCUACCAGCAA2000000006ACAGCUGAAAGAGGAGGACCCCUGCCUUCCUCUGAGG2000000006ACAGGCUCUAGAGAGAGGGAGAAACAAGUGGACCUCGUCCCAUCUUCACUCUUCACUUGAGUUGGCUGUGUUCGGGGGAGCAGAGAGAGCCAGACAGCCCCAAGCUUCUGAGUCUAGAUACAGAAGCCCAUGUCUUCUGCUGUUCUUCACUUCUGGGAAAUUGAAGUGUCUUCUGUUCCCAAGGAAGCUCCUUCCUGUUUGUUUUGUUUUCUAAGAUGUUCAUUUUUAAAGCCUGGCUUCUUAUCCUUAAUAUUAUUUUAAUUUUUUCUCUUUGUUUCUGUUUCUUGCUCUCUCUCCCUGCCU2000000009UUAAAUGAA2000000006ACAAGUCUAGUCUUCUGGUUUUCUAGCCCCUCUGGAUUCCCUUUUGACUCUUCCGUGCA2000000009UCCCAGAUAAUGGAGAAUGUAUCAGCCAGCCUUCCCCACCAAGUCUAAA2000000006AAGACCUGGCCUUUCACUUUUAGUUGGCAUUUGUUAUCCUCUUGUAUACUUGUAUUCCCUUA2000000006ACUCUAACCCUGUGGAAGCAUGGCUGUCUGCACAGAGGGUCCCAUUGUGCAGAAAAGCUCAGAGUAGGUGGGUAGGAGCCCUUCUCUUUGACUUAGGUUUUUAGGAGUCUGAGCA2000000009UCCAUCAAUACCUGUACUAUGAUGGGCUUCUGUUCUCUGCUGAGGGCCAAUACCCUACUGUGGGGAGAGAUGGCACACCAGAUGCUUUUGUGAGAAAGGGAUGGUGGAGUGAGAGCCUUUGCCU2000000009UUAGGGGUGUGUAUUCACAUAGUCCUCAGGGCUCAGUCUUUUGAGGUAAGUGGAAUUAGAGGGCCUUGCUUCUCUUCUUUCCAUUCUUCUUGCUACACCCCUUUUCCAGUUGCUGUGGACCAAUGCAUCUCU2000000009UUAAAGGCAAAUAUUAUCCAGCAAGCAGUCUACCCUGUCCUUUGCAAUUGCUCUUCUCCACGUCUUUCCUGCUACAAGUGUUUUAGAUGUUACUACCUUAUUUUCCCCGAAUUCUAUUUUUGUCCUUGCAGACAGAAUAUAAAAACUCCUGGGCUUAAGGCCUAAGGAAGCCAGUCACCUUCUGGGCAAGGGCUCCUAUCUUUCCUCCCUAUCCAUGGCACUAA2000000006ACCACUUCUCUGCUGCCUCUGUGGAAGAGAUUCCUAUUACUGCAGUACAUACGUCUGCCAGGGGUAACCUGGCCACUGUCCCUGUCCUUCUAC2000000006AGAACCUGAGGGCAAAGAUGGUGGCUGUGUCUCUCCCCGGUAAUGUCACUGUUUUUAUUCCUUCCAUCUAGCAGCUGGCCUAAUCACUCUGAGUCACAGGUGUGGGAUGGAGAGUGGGGAGAGGCACUUAAUCUGUAACCCCCAAGGAGGAAAUAACUAAGAGAUUCUUCUAGGGGUAGCUGGUGGUUGUGCCUUUUGUAGGCUGUUCCCUUUGCCUUAA2000000006ACCUGAAGAUGUCUCCUCAAGCCUGUGGGCAGCAUGCCCAGAUUCCCAGACCUUAAGACACUGUGAGAGUUGUCUCUGUUGGUCCACUGUGUUUAGUUGCAAGGAUUUUUCCAUGUGUGGUGGUGUUUUUUGUUACUGUUUUAAAGGGUGCCCAUUUGUGAUCAGCAUUGUGACUUGGAGAUAAUAAAAUUUAGACUAU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1167	1204	1507	1516	1575	1624	1686	1801	1925	2057	2281	2374	2594
Modification Positions	m6A	m6A	Y	m6A	Y	m6A	m6A	Y	Y	Y	m6A	m6A	m6A
Genomic Coordinates	17:40170539:+	17:40170576:+	17:40170879:+	17:40170888:+	17:40170947:+	17:40170996:+	17:40171058:+	17:40171173:+	17:40171297:+	17:40171429:+	17:40171653:+	17:40171746:+	17:40171966:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BtsJQJ3DteUq f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8