General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000589520
Gene ID:	ENSG00000131475
Gene Name:	VPS25
Sequence (UNICHARACTER ENCODING)	UCGCUUCCCACCCUUCUPUACGUUACЖACCGAAUGUGGACACUCGGCAGAAGCAGCUGGCCGCCUGGUGCUCGCUGGUCCUGUCCUUCUGCCGCCUGCACAAЖCAGUCCAGCAUGACGGUGAUGGAAGCUCAGGAGAGCCCGCUCUUCAACAACGUCAAGCUACAGCGAAAGCUUCCUGUGGAGUCGAUCCAGAUUGUAUUAGAGGAACUGAGGAAGAAAGAGUUCCACGGGCUGGAUGAAGCCACUCUACUGCGGGCUCUGCAGGCCCUACAGCAGGAGCACAAGGCCGAGAUCAUCACUGUCAGCGAUGGCCGAGGCGUCAAGUUCUUCUAGCAGGGACCUGUCUCCCUPUACUUCUUACCPCCCACCUUUCCAGGGCUUUCAAAAGGAGACAGACCBAGUGUCCCCCAAAGЖCUGGAUCUGUGACUCCACCAGЖCUCAAAAGGЖCUCCAGUCCUGAAGGCUGGGЖCCUGGGGAUGGGUUUCUCACACCCCAUAUGUCUGUCCCUUGGAUAGGGUGAGGCUGAAGCACCAGGGAGAAAAUAUGUGCUUCUUCUCGCCCUACCPCCUUUCCCAPCCUAGACUGUCCUUGAGCCAGGGUCUGUAAACCUGACACUPUAUAUGUGUUCACACAUGUAAGU
Sequence (SHORT NAMES ENCODING)	UCGCUUCCCACCCUUCUYUACGUUACm6AACCGAAUGUGGACACUCGGCAGAAGCAGCUGGCCGCCUGGUGCUCGCUGGUCCUGUCCUUCUGCCGCCUGCACAAm6ACAGUCCAGCAUGACGGUGAUGGAAGCUCAGGAGAGCCCGCUCUUCAACAACGUCAAGCUACAGCGAAAGCUUCCUGUGGAGUCGAUCCAGAUUGUAUUAGAGGAACUGAGGAAGAAAGAGUUCCACGGGCUGGAUGAAGCCACUCUACUGCGGGCUCUGCAGGCCCUACAGCAGGAGCACAAGGCCGAGAUCAUCACUGUCAGCGAUGGCCGAGGCGUCAAGUUCUUCUAGCAGGGACCUGUCUCCCUYUACUUCUUACCYCCCACCUUUCCAGGGCUUUCAAAAGGAGACAGACCCmAGUGUCCCCCAAAGm6ACUGGAUCUGUGACUCCACCAGm6ACUCAAAAGGm6ACUCCAGUCCUGAAGGCUGGGm6ACCUGGGGAUGGGUUUCUCACACCCCAUAUGUCUGUCCCUUGGAUAGGGUGAGGCUGAAGCACCAGGGAGAAAAUAUGUGCUUCUUCUCGCCCUACCYCCUUUCCCAYCCUAGACUGUCCUUGAGCCAGGGUCUGUAAACCUGACACUYUAUAUGUGUUCACACAUGUAAGU
Sequence (MODOMICS CODE ENCODING)	UCGCUUCCCACCCUUCU2000000009UUACGUUAC2000000006AACCGAAUGUGGACACUCGGCAGAAGCAGCUGGCCGCCUGGUGCUCGCUGGUCCUGUCCUUCUGCCGCCUGCACAA2000000006ACAGUCCAGCAUGACGGUGAUGGAAGCUCAGGAGAGCCCGCUCUUCAACAACGUCAAGCUACAGCGAAAGCUUCCUGUGGAGUCGAUCCAGAUUGUAUUAGAGGAACUGAGGAAGAAAGAGUUCCACGGGCUGGAUGAAGCCACUCUACUGCGGGCUCUGCAGGCCCUACAGCAGGAGCACAAGGCCGAGAUCAUCACUGUCAGCGAUGGCCGAGGCGUCAAGUUCUUCUAGCAGGGACCUGUCUCCCU2000000009UUACUUCUUACC2000000009UCCCACCUUUCCAGGGCUUUCAAAAGGAGACAGACC2000000090CAGUGUCCCCCAAAG2000000006ACUGGAUCUGUGACUCCACCAG2000000006ACUCAAAAGG2000000006ACUCCAGUCCUGAAGGCUGGG2000000006ACCUGGGGAUGGGUUUCUCACACCCCAUAUGUCUGUCCCUUGGAUAGGGUGAGGCUGAAGCACCAGGGAGAAAAUAUGUGCUUCUUCUCGCCCUACC2000000009UCCUUUCCCA2000000009UCCUAGACUGUCCUUGAGCCAGGGUCUGUAAACCUGACACU2000000009UUAUAUGUGUUCACACAUGUAAGU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	18	27	103	352	364	400	415	437	447	468	565	575	616
Modification Positions	Y	m6A	m6A	Y	Y	Cm	m6A	m6A	m6A	m6A	Y	Y	Y
Genomic Coordinates	17:42773525:+	17:42773738:+	17:42773814:+	17:42779087:+	17:42779099:+	17:42779135:+	17:42779150:+	17:42779172:+	17:42779182:+	17:42779203:+	17:42779300:+	17:42779310:+	17:42779351:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
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