General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000577940
Gene ID:	ENSG00000198231
Gene Name:	DDX42
Sequence (UNICHARACTER ENCODING)	UGAUCCCUUGGAGGCAUUCAUGGCUGAAGUGGAGGAUCAGGCAGCUAGAGACAUGAAGAGGCUUGAAGAAAAGGACAAGGAAAGAAAAAACGUAAAGGGUAUUCGAGAUGACAUUGAAGAGGAAGAUGACCAAGAAGCUUAUUUUCGAUACAUGGCAGAAAACCCAACUGCUGGUGUGGUUCAGGAGGAAGAGGAAGACAAUCUAGAAUAUGAUAGUGACGGAAAUCCAAUUGCACCUACCAAAAAAAUCAUUGAUCCUCUUCCCCCCAUUGAUCAUUCAGAGACUAACUUUGAAUAAUUGGACCUGCAGAUUGACUAUCCACCAUUUGAAAAAAACUUUUACAAUGAGCAUGAAGAGAUAACCAACCUCACUCCACAGCAGUUAAUAGAUCUCCGGCAUAAGCUCAAUCUUCGGGUCUCUGGUGCUGCACCUCCUAGACCAGGAAGUAGCUUUGCUCAUUUUGGGUUUGACGAACAACUUAUGCACCAGAUUCGGAAAUCUGAAUACACACAGCCCACUCCAAUACAGUGCCAGGGUGUGCCUGUGGCAUUAAGUGGUAGAGACAUGAUUGGUAUUGCCAAAACAGGUAGUGGGAAAACUGCAGCCUUCAUUUGGCCCAUGUUGAUUCAUAUAAUGGACCAGAAGGAGUUGGAACCAGGUGAUGGACCAAUUGCAGUGAUUGUGUGUCCUACCAGGGAGCUUUGCCAGCAGAUCCAUGCAGAAUGUAAGCGGUUUGGAAAAGCAUAUAAUCUUCGAUCAGUGGCCGUAUAUGGAGGAGGGAGUAUGUGGGAGCAGGCCAAGGCCCUUCAGGAGGGGGCAGAGAUUGUUGUGUGUACCCCAGGUCGACUGAUAGAUCAUGUGAAAAAGAAAGCUACCAAUCUUCAAAGAGUCUCUUACCUUGUGUUUGAUGAAGCAGAUCGAAUGUUUGACAUGGGAUUUGAGUACCAAGUUCGAUCCAUAGCAAGUCAUGUUCGUCCUGACAGGCAGACUCUCUUAUUUAGUGCAACUUUUCGGAAGAAGAUUGAAAAGUUGGCCAGAGЖCAPCCUGAUCGACCCUAUUCGAGUGGUGCAGGGAGAUAUUGGAGAGGCAAAUGAAGAUGUGACACAGAUUGUGGAGAUUCUCCAUUCUGGACCUAGUAAAUGGAACUGGCUUACCCGGCGUCUGGUAGAAUUUACCUCUUCAGGGAGUGUCCPCCUCUUUGUUACUAAAAAAGCCAAUGCUGAAGAGCUAGCGAAUAACCUUAAЖCAGGAGGGUCAUAAUCUUGGGCUGCUCCAUGGGGAUAUGGAUCAGAGUGAGAGAAЖCAAGGUCAUUUCAGACUPUAAGAAAAAGGACAUCCCAGUCCUGGUGGCCACAGAUGUUGCAGCCCGUGGUCUGGACAUUCCUUCAAUUAAGЖCUGUCAUUAACUAUGAUGUGGCACGAGACAUUG
Sequence (SHORT NAMES ENCODING)	UGAUCCCUUGGAGGCAUUCAUGGCUGAAGUGGAGGAUCAGGCAGCUAGAGACAUGAAGAGGCUUGAAGAAAAGGACAAGGAAAGAAAAAACGUAAAGGGUAUUCGAGAUGACAUUGAAGAGGAAGAUGACCAAGAAGCUUAUUUUCGAUACAUGGCAGAAAACCCAACUGCUGGUGUGGUUCAGGAGGAAGAGGAAGACAAUCUAGAAUAUGAUAGUGACGGAAAUCCAAUUGCACCUACCAAAAAAAUCAUUGAUCCUCUUCCCCCCAUUGAUCAUUCAGAGACUAACUUUGAAUAAUUGGACCUGCAGAUUGACUAUCCACCAUUUGAAAAAAACUUUUACAAUGAGCAUGAAGAGAUAACCAACCUCACUCCACAGCAGUUAAUAGAUCUCCGGCAUAAGCUCAAUCUUCGGGUCUCUGGUGCUGCACCUCCUAGACCAGGAAGUAGCUUUGCUCAUUUUGGGUUUGACGAACAACUUAUGCACCAGAUUCGGAAAUCUGAAUACACACAGCCCACUCCAAUACAGUGCCAGGGUGUGCCUGUGGCAUUAAGUGGUAGAGACAUGAUUGGUAUUGCCAAAACAGGUAGUGGGAAAACUGCAGCCUUCAUUUGGCCCAUGUUGAUUCAUAUAAUGGACCAGAAGGAGUUGGAACCAGGUGAUGGACCAAUUGCAGUGAUUGUGUGUCCUACCAGGGAGCUUUGCCAGCAGAUCCAUGCAGAAUGUAAGCGGUUUGGAAAAGCAUAUAAUCUUCGAUCAGUGGCCGUAUAUGGAGGAGGGAGUAUGUGGGAGCAGGCCAAGGCCCUUCAGGAGGGGGCAGAGAUUGUUGUGUGUACCCCAGGUCGACUGAUAGAUCAUGUGAAAAAGAAAGCUACCAAUCUUCAAAGAGUCUCUUACCUUGUGUUUGAUGAAGCAGAUCGAAUGUUUGACAUGGGAUUUGAGUACCAAGUUCGAUCCAUAGCAAGUCAUGUUCGUCCUGACAGGCAGACUCUCUUAUUUAGUGCAACUUUUCGGAAGAAGAUUGAAAAGUUGGCCAGAGm6ACAYCCUGAUCGACCCUAUUCGAGUGGUGCAGGGAGAUAUUGGAGAGGCAAAUGAAGAUGUGACACAGAUUGUGGAGAUUCUCCAUUCUGGACCUAGUAAAUGGAACUGGCUUACCCGGCGUCUGGUAGAAUUUACCUCUUCAGGGAGUGUCCYCCUCUUUGUUACUAAAAAAGCCAAUGCUGAAGAGCUAGCGAAUAACCUUAAm6ACAGGAGGGUCAUAAUCUUGGGCUGCUCCAUGGGGAUAUGGAUCAGAGUGAGAGAAm6ACAAGGUCAUUUCAGACUYUAAGAAAAAGGACAUCCCAGUCCUGGUGGCCACAGAUGUUGCAGCCCGUGGUCUGGACAUUCCUUCAAUUAAGm6ACUGUCAUUAACUAUGAUGUGGCACGAGACAUUG
Sequence (MODOMICS CODE ENCODING)	UGAUCCCUUGGAGGCAUUCAUGGCUGAAGUGGAGGAUCAGGCAGCUAGAGACAUGAAGAGGCUUGAAGAAAAGGACAAGGAAAGAAAAAACGUAAAGGGUAUUCGAGAUGACAUUGAAGAGGAAGAUGACCAAGAAGCUUAUUUUCGAUACAUGGCAGAAAACCCAACUGCUGGUGUGGUUCAGGAGGAAGAGGAAGACAAUCUAGAAUAUGAUAGUGACGGAAAUCCAAUUGCACCUACCAAAAAAAUCAUUGAUCCUCUUCCCCCCAUUGAUCAUUCAGAGACUAACUUUGAAUAAUUGGACCUGCAGAUUGACUAUCCACCAUUUGAAAAAAACUUUUACAAUGAGCAUGAAGAGAUAACCAACCUCACUCCACAGCAGUUAAUAGAUCUCCGGCAUAAGCUCAAUCUUCGGGUCUCUGGUGCUGCACCUCCUAGACCAGGAAGUAGCUUUGCUCAUUUUGGGUUUGACGAACAACUUAUGCACCAGAUUCGGAAAUCUGAAUACACACAGCCCACUCCAAUACAGUGCCAGGGUGUGCCUGUGGCAUUAAGUGGUAGAGACAUGAUUGGUAUUGCCAAAACAGGUAGUGGGAAAACUGCAGCCUUCAUUUGGCCCAUGUUGAUUCAUAUAAUGGACCAGAAGGAGUUGGAACCAGGUGAUGGACCAAUUGCAGUGAUUGUGUGUCCUACCAGGGAGCUUUGCCAGCAGAUCCAUGCAGAAUGUAAGCGGUUUGGAAAAGCAUAUAAUCUUCGAUCAGUGGCCGUAUAUGGAGGAGGGAGUAUGUGGGAGCAGGCCAAGGCCCUUCAGGAGGGGGCAGAGAUUGUUGUGUGUACCCCAGGUCGACUGAUAGAUCAUGUGAAAAAGAAAGCUACCAAUCUUCAAAGAGUCUCUUACCUUGUGUUUGAUGAAGCAGAUCGAAUGUUUGACAUGGGAUUUGAGUACCAAGUUCGAUCCAUAGCAAGUCAUGUUCGUCCUGACAGGCAGACUCUCUUAUUUAGUGCAACUUUUCGGAAGAAGAUUGAAAAGUUGGCCAGAG2000000006ACA2000000009UCCUGAUCGACCCUAUUCGAGUGGUGCAGGGAGAUAUUGGAGAGGCAAAUGAAGAUGUGACACAGAUUGUGGAGAUUCUCCAUUCUGGACCUAGUAAAUGGAACUGGCUUACCCGGCGUCUGGUAGAAUUUACCUCUUCAGGGAGUGUCC2000000009UCCUCUUUGUUACUAAAAAAGCCAAUGCUGAAGAGCUAGCGAAUAACCUUAA2000000006ACAGGAGGGUCAUAAUCUUGGGCUGCUCCAUGGGGAUAUGGAUCAGAGUGAGAGAA2000000006ACAAGGUCAUUUCAGACU2000000009UUAAGAAAAAGGACAUCCCAGUCCUGGUGGCCACAGAUGUUGCAGCCCGUGGUCUGGACAUUCCUUCAAUUAAG2000000006ACUGUCAUUAACUAUGAUGUGGCACGAGACAUUG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1041	1044	1194	1246	1302	1320	1394
Modification Positions	m6A	Y	Y	m6A	m6A	Y	m6A
Genomic Coordinates	17:63811127:+	17:63811130:+	17:63812038:+	17:63812090:+	17:63812146:+	17:63812164:+	17:63813257:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	8cMbzB4aD5Se ArijeGVTwYBw bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se BkoLW2CBToyL PF5iqBNSbHaa UKen6WEino9G bXBqJigD9oV3 Yfn77uLS5tv8