General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000580391
Gene ID:	ENSG00000108465
Gene Name:	CDK5RAP3
Sequence (UNICHARACTER ENCODING)	UGGGGACAGGAGCUGGGUGUGCUGGGGACUGGCCGCGGACCCCUAACCUGUGUCUCCGGUCUCCCUCCGGAAGCGGCUCAACCCAGCCCAUCGCUCUGGCCCCGUUCUGGCCCUGCAGGGUGGUGGUUGGGACGUUGAAAUGAGCGCGCGAGUGGUACGUCCUCUCUCCGCGCUCACGCCCCCCUCCUCACCGUGUUUCCCGCCAGGACCAUCAGCACGUGCCCAUCGACAPCCAGACCAGCAAGCUGCUCGAUUGGCUGGUGGACAGAAGGCACUGCAGCCUGAAAUGGCAGAGUCUGGUGCUGACGAUCCGCGAGAAGAUCAAUGCUGCCAUCCAGGACAUGCCAGAGAGCGAAGAGAUCGCCCAGCUGCUGUCUGGGUCCUЖCAUUCACUACUUUCACUGCCUAAGAAUCCUGGACCUUCUCAAAGGCACAGAGGCCUCCACGAЖGAAUAUUUUUGGCCGAUACUCUUCACAGCGGAUGAAGGCAAGAUUGGCAGGAGAUUAUAGCUCUGUAUGAGAAGGACAACACCUACUUAGUGGAЖCUCUCUAGCCUCCUGGUUCGGAAUGUCAACUAUGAGAUCCCCUCACUGAAGAAGCAGAUUGCCAAGUGCCAGCAGCUGCAGCAAGAAUACAGCCGCAAGGAGGAGGAGUGCCAGGCAGGGGCUGCCGAGAUGCGGGAGCAGUUCUACCACUCCUGCAAGCAGUAUGGCAUCACGGGCGAAAAUGUCCGAGGAGAACUGCUGGCCCUGGUGAAGGACCUGCCGAGUCAGCUGGCUGAGAUUGGGGCAGCGGCUCAGCAGUCCCUGGGGGAAGCCAUUGACGUGUACCAGGCGUCUGUGGGGUUUGUGUGUGAGAGCCCCACAGAGCAGGUGUUGCCAAUGCUGCGGUUCGUGCAGAAGCGGGGAAACUCAACGGUGUACGAGUGGAGGACAGGGACAGAGCCCUCUGUGGUGGAACGACCCCACCUCGAGGAGCUUCCUGAGCAGGUGGCAGAAGAUGCGAUUGACUGGGGCGACUUUGGGGUAGAGGCAGUGUCUGAGGGGЖCUGACUCUGGCAUCUCUGCCGAGGCUGCUGGAAUCGACUGGGGCAUCUUCCCGGAAUCAGAUUCAAAGGAUCCUGGAGGUGAUGGGAUAGACUGGGGAGACGAUGCUGUUGCUUUGCAGAUCACAGUGCUGGAAGCAGGAACCCAGGCUCCAGAAGGUGUUGCCAGGGGCCCAGAUGCCCUGACACUGCUUGAAUACACUGAGЖCCCGGAAUCAGUUCCUUGAUGAGCUCAUGGAGCUUGAGAUCUUCUUAGCCCAGAGAGCAGUGGAGUUGAGUGAGGAGGCAGAUGUCCUGUCUGUGAGCCAGUUCCAGCUGGCUCCAGCCAPCCUGCAGGGCCAGACCAAAGAGAAGAUGGUUACCAUGGUGUCAGUGCUGGAGGAUCUGAUUGGCAAGCUUACCAGUCUUCAGCUGCAACACCUGUUUAUGAUCCUGGCCUCACCAAGGUAUGUGGACCGAGUGACUGAAUUCCUCCAGCAAAAGCUGAAGCAGUCCCAGCUGCUGGCUUUGAAGAAAGAGCUGAUGGUGCAGAAGCAGCAGGAGGCACUUGAGGAGCAGGCGGCUCUGGAGCCUAAGCUGGACCUGCUACUGGAGAAGACCAAGGAGCUGCAGAAGCUGAUUGAAGCUGACAUCUCCAAGAGGUACAGCGGGCGCCCUGUGAACCUGAUGGGAACCUCUCUGUGACACCCUCCGUGUUCUUGCCUGCCCAUCUUCUCCGCUUUUGGGAUGAAGAUGAUAGCCAGGGCUGUUGUUUUGGGGCCCUUCAAGGCAAAAGACCAGGCUGACUGGAAGAUGGAAAGCCACAGGAAGGAAGCGGCACCUGAUGGUGAUCUUGGCACUCUCCAUGUUCUCUACAAGAAGCUGUGGUGAUUGGCCCUGUGGUCUAUCAGGCGAAAACCACAGAUUCUCCUUCUAG
Sequence (SHORT NAMES ENCODING)	UGGGGACAGGAGCUGGGUGUGCUGGGGACUGGCCGCGGACCCCUAACCUGUGUCUCCGGUCUCCCUCCGGAAGCGGCUCAACCCAGCCCAUCGCUCUGGCCCCGUUCUGGCCCUGCAGGGUGGUGGUUGGGACGUUGAAAUGAGCGCGCGAGUGGUACGUCCUCUCUCCGCGCUCACGCCCCCCUCCUCACCGUGUUUCCCGCCAGGACCAUCAGCACGUGCCCAUCGACAYCCAGACCAGCAAGCUGCUCGAUUGGCUGGUGGACAGAAGGCACUGCAGCCUGAAAUGGCAGAGUCUGGUGCUGACGAUCCGCGAGAAGAUCAAUGCUGCCAUCCAGGACAUGCCAGAGAGCGAAGAGAUCGCCCAGCUGCUGUCUGGGUCCUm6ACAUUCACUACUUUCACUGCCUAAGAAUCCUGGACCUUCUCAAAGGCACAGAGGCCUCCACGAm6AGAAUAUUUUUGGCCGAUACUCUUCACAGCGGAUGAAGGCAAGAUUGGCAGGAGAUUAUAGCUCUGUAUGAGAAGGACAACACCUACUUAGUGGAm6ACUCUCUAGCCUCCUGGUUCGGAAUGUCAACUAUGAGAUCCCCUCACUGAAGAAGCAGAUUGCCAAGUGCCAGCAGCUGCAGCAAGAAUACAGCCGCAAGGAGGAGGAGUGCCAGGCAGGGGCUGCCGAGAUGCGGGAGCAGUUCUACCACUCCUGCAAGCAGUAUGGCAUCACGGGCGAAAAUGUCCGAGGAGAACUGCUGGCCCUGGUGAAGGACCUGCCGAGUCAGCUGGCUGAGAUUGGGGCAGCGGCUCAGCAGUCCCUGGGGGAAGCCAUUGACGUGUACCAGGCGUCUGUGGGGUUUGUGUGUGAGAGCCCCACAGAGCAGGUGUUGCCAAUGCUGCGGUUCGUGCAGAAGCGGGGAAACUCAACGGUGUACGAGUGGAGGACAGGGACAGAGCCCUCUGUGGUGGAACGACCCCACCUCGAGGAGCUUCCUGAGCAGGUGGCAGAAGAUGCGAUUGACUGGGGCGACUUUGGGGUAGAGGCAGUGUCUGAGGGGm6ACUGACUCUGGCAUCUCUGCCGAGGCUGCUGGAAUCGACUGGGGCAUCUUCCCGGAAUCAGAUUCAAAGGAUCCUGGAGGUGAUGGGAUAGACUGGGGAGACGAUGCUGUUGCUUUGCAGAUCACAGUGCUGGAAGCAGGAACCCAGGCUCCAGAAGGUGUUGCCAGGGGCCCAGAUGCCCUGACACUGCUUGAAUACACUGAGm6ACCCGGAAUCAGUUCCUUGAUGAGCUCAUGGAGCUUGAGAUCUUCUUAGCCCAGAGAGCAGUGGAGUUGAGUGAGGAGGCAGAUGUCCUGUCUGUGAGCCAGUUCCAGCUGGCUCCAGCCAYCCUGCAGGGCCAGACCAAAGAGAAGAUGGUUACCAUGGUGUCAGUGCUGGAGGAUCUGAUUGGCAAGCUUACCAGUCUUCAGCUGCAACACCUGUUUAUGAUCCUGGCCUCACCAAGGUAUGUGGACCGAGUGACUGAAUUCCUCCAGCAAAAGCUGAAGCAGUCCCAGCUGCUGGCUUUGAAGAAAGAGCUGAUGGUGCAGAAGCAGCAGGAGGCACUUGAGGAGCAGGCGGCUCUGGAGCCUAAGCUGGACCUGCUACUGGAGAAGACCAAGGAGCUGCAGAAGCUGAUUGAAGCUGACAUCUCCAAGAGGUACAGCGGGCGCCCUGUGAACCUGAUGGGAACCUCUCUGUGACACCCUCCGUGUUCUUGCCUGCCCAUCUUCUCCGCUUUUGGGAUGAAGAUGAUAGCCAGGGCUGUUGUUUUGGGGCCCUUCAAGGCAAAAGACCAGGCUGACUGGAAGAUGGAAAGCCACAGGAAGGAAGCGGCACCUGAUGGUGAUCUUGGCACUCUCCAUGUUCUCUACAAGAAGCUGUGGUGAUUGGCCCUGUGGUCUAUCAGGCGAAAACCACAGAUUCUCCUUCUAG
Sequence (MODOMICS CODE ENCODING)	UGGGGACAGGAGCUGGGUGUGCUGGGGACUGGCCGCGGACCCCUAACCUGUGUCUCCGGUCUCCCUCCGGAAGCGGCUCAACCCAGCCCAUCGCUCUGGCCCCGUUCUGGCCCUGCAGGGUGGUGGUUGGGACGUUGAAAUGAGCGCGCGAGUGGUACGUCCUCUCUCCGCGCUCACGCCCCCCUCCUCACCGUGUUUCCCGCCAGGACCAUCAGCACGUGCCCAUCGACA2000000009UCCAGACCAGCAAGCUGCUCGAUUGGCUGGUGGACAGAAGGCACUGCAGCCUGAAAUGGCAGAGUCUGGUGCUGACGAUCCGCGAGAAGAUCAAUGCUGCCAUCCAGGACAUGCCAGAGAGCGAAGAGAUCGCCCAGCUGCUGUCUGGGUCCU2000000006ACAUUCACUACUUUCACUGCCUAAGAAUCCUGGACCUUCUCAAAGGCACAGAGGCCUCCACGA2000000006AGAAUAUUUUUGGCCGAUACUCUUCACAGCGGAUGAAGGCAAGAUUGGCAGGAGAUUAUAGCUCUGUAUGAGAAGGACAACACCUACUUAGUGGA2000000006ACUCUCUAGCCUCCUGGUUCGGAAUGUCAACUAUGAGAUCCCCUCACUGAAGAAGCAGAUUGCCAAGUGCCAGCAGCUGCAGCAAGAAUACAGCCGCAAGGAGGAGGAGUGCCAGGCAGGGGCUGCCGAGAUGCGGGAGCAGUUCUACCACUCCUGCAAGCAGUAUGGCAUCACGGGCGAAAAUGUCCGAGGAGAACUGCUGGCCCUGGUGAAGGACCUGCCGAGUCAGCUGGCUGAGAUUGGGGCAGCGGCUCAGCAGUCCCUGGGGGAAGCCAUUGACGUGUACCAGGCGUCUGUGGGGUUUGUGUGUGAGAGCCCCACAGAGCAGGUGUUGCCAAUGCUGCGGUUCGUGCAGAAGCGGGGAAACUCAACGGUGUACGAGUGGAGGACAGGGACAGAGCCCUCUGUGGUGGAACGACCCCACCUCGAGGAGCUUCCUGAGCAGGUGGCAGAAGAUGCGAUUGACUGGGGCGACUUUGGGGUAGAGGCAGUGUCUGAGGGG2000000006ACUGACUCUGGCAUCUCUGCCGAGGCUGCUGGAAUCGACUGGGGCAUCUUCCCGGAAUCAGAUUCAAAGGAUCCUGGAGGUGAUGGGAUAGACUGGGGAGACGAUGCUGUUGCUUUGCAGAUCACAGUGCUGGAAGCAGGAACCCAGGCUCCAGAAGGUGUUGCCAGGGGCCCAGAUGCCCUGACACUGCUUGAAUACACUGAG2000000006ACCCGGAAUCAGUUCCUUGAUGAGCUCAUGGAGCUUGAGAUCUUCUUAGCCCAGAGAGCAGUGGAGUUGAGUGAGGAGGCAGAUGUCCUGUCUGUGAGCCAGUUCCAGCUGGCUCCAGCCA2000000009UCCUGCAGGGCCAGACCAAAGAGAAGAUGGUUACCAUGGUGUCAGUGCUGGAGGAUCUGAUUGGCAAGCUUACCAGUCUUCAGCUGCAACACCUGUUUAUGAUCCUGGCCUCACCAAGGUAUGUGGACCGAGUGACUGAAUUCCUCCAGCAAAAGCUGAAGCAGUCCCAGCUGCUGGCUUUGAAGAAAGAGCUGAUGGUGCAGAAGCAGCAGGAGGCACUUGAGGAGCAGGCGGCUCUGGAGCCUAAGCUGGACCUGCUACUGGAGAAGACCAAGGAGCUGCAGAAGCUGAUUGAAGCUGACAUCUCCAAGAGGUACAGCGGGCGCCCUGUGAACCUGAUGGGAACCUCUCUGUGACACCCUCCGUGUUCUUGCCUGCCCAUCUUCUCCGCUUUUGGGAUGAAGAUGAUAGCCAGGGCUGUUGUUUUGGGGCCCUUCAAGGCAAAAGACCAGGCUGACUGGAAGAUGGAAAGCCACAGGAAGGAAGCGGCACCUGAUGGUGAUCUUGGCACUCUCCAUGUUCUCUACAAGAAGCUGUGGUGAUUGGCCCUGUGGUCUAUCAGGCGAAAACCACAGAUUCUCCUUCUAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	232	385	448	543	1045	1249	1370
Modification Positions	Y	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	17:47971387:+	17:47973931:+	17:47973994:+	17:47975163:+	17:47976754:+	17:47978885:+	17:47980681:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 XWZVGdLC6gGJ Yfn77uLS5tv8	dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8