Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000582866
Gene ID: ENSG00000263731
Gene Name: None
Sequence (UNICHARACTER ENCODING) UUUAUGACCUUGACACUUUUAAAGGGUACUCUCAGCUAUUUUGUAGAAUGUCCCUCACACUGGGGACUCUGACCUUAUGACUGGACAAGGUUUUGUUUUUUGUUUUUUUUUUUUUUUUUGAGACGGAGUCUUUCUCUGUCUUCUAAGCUGGAGUGCGGUGGUGUGAUCUCAGCUCACUGCAAUCUCUGCCUCCCAGGUUCAAGCGAUUCUCCUUCCUCAGCCUCCUGAGUAGCUGGGAUUUUAGGCACCCGCCACCACACCCGGCUAAUUAUUGUAUUUUUAUUAGAGACAAGGUUUCACCAUGCUGGCCAGGCUGGUCUUGAACUCCUGACCUCAUGAUCCAUCCGCCUUGGCCUCCCAAAAGUGCUGGGAUUACAGGCCUGAGCCACCACGCCCUGCUGGUUUAUUUUAUUUUUUGGCAUGAAUACCACAGCUGGGAUGUCAUCUUCUCAAUGCAUAGUGGAGAUAUGCAAUGUCAGUCUGUCCAACUCCUGGUCCUGUUAGUUCAGGUGGUGGCAGCGGCUGCCGGGGCUUCUCCCCUACAUAGUUACUGUUUUCCCUUUGUCAUCCAUAAAUACCUUGGGGAGAUACUUCCAGACUAAGUGAAUGUCUGUUUCACUUCCAAGUUUUACCCACUUUUUUUUUUUUUUUUGAGAUGGAGUCUCACUUUUGCCGAGGCUGUAGUGCAAUGGCGCCAUCUCAGCUCACUGCAACCUCCGCCUCCCAGGUUCAAGCAAUUCCCCCGUCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCACGCGCCACCAUGCCCAGGUAAUUUUUUUUAUUUUUAGUAGAGACGGGGUUUCACCGUGUUGCCCAGGCUGGUCUCCAACUCCUGAGCUCAGGCAGUCCACCUGCCUCAGCCUCCCAAGGUGCUAGGAUUACAGGCGUGAGCCACCGUGCCCGGCCUACCCACUAAUUAAUUUCAGCAUCCACUGGUGGGUCUUGCAAUGCAGUAAUUAUUAACUUAGUUUUCAAAGGUGAUUUUUGCAUUUUCCUCAUUCCUUUGACGUUUAUUAAUUGGAAUUCAUCUCUAAGAAAGAGCAGUCCCUUCAGCUUUUUUCCCUUUUUUUUUUUUGAGЖCAGGGUCUUGCUCUGCGGCUCAGGCUGCAGUGCAGUGGCUCGAUCACGGCUCACUGCAGCCUCGACCUCCCGGGCUCACGUGAUCUCCCAUCUCAGCCUCCUGAGUAACCAGAACCACAGGUGCUCACCACCAUGCCCAGCUGACUUUUUGUAUUUUUUGUAGAGAUGGGGUUUACCCAUGUUGCUCAGGCUGGUCUCAAAUUUUCGAGCUCAAGUGAUCCGCCCGCCUUGGCCUCCCAAAAGGCAUGAGCCACUGCGCCUGACCUACGAUUUCUUUCUUUAUAUAUCAGUAUGAACGCAAGGGCUGUUUGUUGGAUUCUGUGAGUCAUAAUCUGAUACUGUUUCCACGCUUUGGCCAUUGGGAGCUCCUGGAGAUUGUCUCCUGUGCCCUAUCCUUAUUUAAGCACUUGUUUAUUUUGGGAUGUCUUCAGUUUUCCUUGUCCCAGCUCUGCACCCAGCUGCUUCUCCAGGGAGCCCUCCCUCACUGGAGACUGGGAUUUAGCAACCAAGACCUGGGCACUGGCUGUGCUUGUUGCUUCUGGGCCCUCCUGGGACAGAGCUGGGAAGUGGAUCUAUGACACGUGCUUGUGCAUUUACCCGCCCUGUUGGUUUCUGUAGCUGUCUAGUUCCUGCUGUUCCUGUCUCACCUGCCCCUUUCCUUAUGUGUAGUUUCUUCCUGUGACAGGGAGAAACCUGGCUCUCAGAUUGACAGGACAUUCGCUUAGGCCAUGUCAGUGCUGUAGGUGAACUGUUCAACCUGUGCCCCAGGGAGGCGCAGUCACUAUGGAGGCACCUUACUUCCUUAAUCGUGUACUGUUGUUUUUGUGUUUGACCUGUAGCAUCUAAGUACUGGUUUCAAAAGUUGCCUAGAUGAGUUCUUUUCUUUCUUUCCACCUCCUGCAAAUUAUGUGAUUUGCAUAAUUUGUACAUAGUUAGGUUCAUUUGUUAGUUUGUAUUCCUUUUGGCUUCCCCCAUAUCCUCGUUGACUUUUUCUUUCUUUUGUAACUUACAUAUGUUAUGAAAUUUAUAUGAGGAUAUAUAAUUUUCAUAAAUGUUUAUGGUUUACAUGUAUUAGUUGUUAUUAUUAAGAUCACCCUGGGAUUGACUGGCCAAGCAUUUGGUGGAAGAUAGCAAUAAAUAAUACAUCAUAAAAGACUPUAAUGUAAAAAUAAAGCCAUGAAAGUACCAAGAAAUAAAUCUUCUCAUUUUAAUUACAUCAGCUUGUCUGUGAUCAUGUAGCCUAAGGUAGGCCAGAGUUAAUUUUUGUGUUAUCUAUACACGUUAUUGAAGCGAAUUAUAAAAUGUUUUAGCAUGUUAAUUACUUGUAAAUUAAUAUCUACAUAUAAAAAUGUGAGCAUAUAUUCUAUUUAGUAUAUUAAUCCUUCAUAAЖCAAGUAAUGCAAGUUAGUAUUAAUGAUAUCUUAAGACUUAACAUUCCUUUUUUAGUUUGUGUUGAAUAAAUGAACAUCUAAGAGUUCAUGAUGAUGCUUAAGGAAAGAAGCCUCAUGUUUACCUUUGGAAGUUGUAAGGCACUGACUCAUAAAAAUUGGCAAAUAAAAGGAAAGAAUCGGGCAUUU
Sequence (SHORT NAMES ENCODING) UUUAUGACCUUGACACUUUUAAAGGGUACUCUCAGCUAUUUUGUAGAAUGUCCCUCACACUGGGGACUCUGACCUUAUGACUGGACAAGGUUUUGUUUUUUGUUUUUUUUUUUUUUUUUGAGACGGAGUCUUUCUCUGUCUUCUAAGCUGGAGUGCGGUGGUGUGAUCUCAGCUCACUGCAAUCUCUGCCUCCCAGGUUCAAGCGAUUCUCCUUCCUCAGCCUCCUGAGUAGCUGGGAUUUUAGGCACCCGCCACCACACCCGGCUAAUUAUUGUAUUUUUAUUAGAGACAAGGUUUCACCAUGCUGGCCAGGCUGGUCUUGAACUCCUGACCUCAUGAUCCAUCCGCCUUGGCCUCCCAAAAGUGCUGGGAUUACAGGCCUGAGCCACCACGCCCUGCUGGUUUAUUUUAUUUUUUGGCAUGAAUACCACAGCUGGGAUGUCAUCUUCUCAAUGCAUAGUGGAGAUAUGCAAUGUCAGUCUGUCCAACUCCUGGUCCUGUUAGUUCAGGUGGUGGCAGCGGCUGCCGGGGCUUCUCCCCUACAUAGUUACUGUUUUCCCUUUGUCAUCCAUAAAUACCUUGGGGAGAUACUUCCAGACUAAGUGAAUGUCUGUUUCACUUCCAAGUUUUACCCACUUUUUUUUUUUUUUUUGAGAUGGAGUCUCACUUUUGCCGAGGCUGUAGUGCAAUGGCGCCAUCUCAGCUCACUGCAACCUCCGCCUCCCAGGUUCAAGCAAUUCCCCCGUCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCACGCGCCACCAUGCCCAGGUAAUUUUUUUUAUUUUUAGUAGAGACGGGGUUUCACCGUGUUGCCCAGGCUGGUCUCCAACUCCUGAGCUCAGGCAGUCCACCUGCCUCAGCCUCCCAAGGUGCUAGGAUUACAGGCGUGAGCCACCGUGCCCGGCCUACCCACUAAUUAAUUUCAGCAUCCACUGGUGGGUCUUGCAAUGCAGUAAUUAUUAACUUAGUUUUCAAAGGUGAUUUUUGCAUUUUCCUCAUUCCUUUGACGUUUAUUAAUUGGAAUUCAUCUCUAAGAAAGAGCAGUCCCUUCAGCUUUUUUCCCUUUUUUUUUUUUGAGm6ACAGGGUCUUGCUCUGCGGCUCAGGCUGCAGUGCAGUGGCUCGAUCACGGCUCACUGCAGCCUCGACCUCCCGGGCUCACGUGAUCUCCCAUCUCAGCCUCCUGAGUAACCAGAACCACAGGUGCUCACCACCAUGCCCAGCUGACUUUUUGUAUUUUUUGUAGAGAUGGGGUUUACCCAUGUUGCUCAGGCUGGUCUCAAAUUUUCGAGCUCAAGUGAUCCGCCCGCCUUGGCCUCCCAAAAGGCAUGAGCCACUGCGCCUGACCUACGAUUUCUUUCUUUAUAUAUCAGUAUGAACGCAAGGGCUGUUUGUUGGAUUCUGUGAGUCAUAAUCUGAUACUGUUUCCACGCUUUGGCCAUUGGGAGCUCCUGGAGAUUGUCUCCUGUGCCCUAUCCUUAUUUAAGCACUUGUUUAUUUUGGGAUGUCUUCAGUUUUCCUUGUCCCAGCUCUGCACCCAGCUGCUUCUCCAGGGAGCCCUCCCUCACUGGAGACUGGGAUUUAGCAACCAAGACCUGGGCACUGGCUGUGCUUGUUGCUUCUGGGCCCUCCUGGGACAGAGCUGGGAAGUGGAUCUAUGACACGUGCUUGUGCAUUUACCCGCCCUGUUGGUUUCUGUAGCUGUCUAGUUCCUGCUGUUCCUGUCUCACCUGCCCCUUUCCUUAUGUGUAGUUUCUUCCUGUGACAGGGAGAAACCUGGCUCUCAGAUUGACAGGACAUUCGCUUAGGCCAUGUCAGUGCUGUAGGUGAACUGUUCAACCUGUGCCCCAGGGAGGCGCAGUCACUAUGGAGGCACCUUACUUCCUUAAUCGUGUACUGUUGUUUUUGUGUUUGACCUGUAGCAUCUAAGUACUGGUUUCAAAAGUUGCCUAGAUGAGUUCUUUUCUUUCUUUCCACCUCCUGCAAAUUAUGUGAUUUGCAUAAUUUGUACAUAGUUAGGUUCAUUUGUUAGUUUGUAUUCCUUUUGGCUUCCCCCAUAUCCUCGUUGACUUUUUCUUUCUUUUGUAACUUACAUAUGUUAUGAAAUUUAUAUGAGGAUAUAUAAUUUUCAUAAAUGUUUAUGGUUUACAUGUAUUAGUUGUUAUUAUUAAGAUCACCCUGGGAUUGACUGGCCAAGCAUUUGGUGGAAGAUAGCAAUAAAUAAUACAUCAUAAAAGACUYUAAUGUAAAAAUAAAGCCAUGAAAGUACCAAGAAAUAAAUCUUCUCAUUUUAAUUACAUCAGCUUGUCUGUGAUCAUGUAGCCUAAGGUAGGCCAGAGUUAAUUUUUGUGUUAUCUAUACACGUUAUUGAAGCGAAUUAUAAAAUGUUUUAGCAUGUUAAUUACUUGUAAAUUAAUAUCUACAUAUAAAAAUGUGAGCAUAUAUUCUAUUUAGUAUAUUAAUCCUUCAUAAm6ACAAGUAAUGCAAGUUAGUAUUAAUGAUAUCUUAAGACUUAACAUUCCUUUUUUAGUUUGUGUUGAAUAAAUGAACAUCUAAGAGUUCAUGAUGAUGCUUAAGGAAAGAAGCCUCAUGUUUACCUUUGGAAGUUGUAAGGCACUGACUCAUAAAAAUUGGCAAAUAAAAGGAAAGAAUCGGGCAUUU
Sequence (MODOMICS CODE ENCODING) UUUAUGACCUUGACACUUUUAAAGGGUACUCUCAGCUAUUUUGUAGAAUGUCCCUCACACUGGGGACUCUGACCUUAUGACUGGACAAGGUUUUGUUUUUUGUUUUUUUUUUUUUUUUUGAGACGGAGUCUUUCUCUGUCUUCUAAGCUGGAGUGCGGUGGUGUGAUCUCAGCUCACUGCAAUCUCUGCCUCCCAGGUUCAAGCGAUUCUCCUUCCUCAGCCUCCUGAGUAGCUGGGAUUUUAGGCACCCGCCACCACACCCGGCUAAUUAUUGUAUUUUUAUUAGAGACAAGGUUUCACCAUGCUGGCCAGGCUGGUCUUGAACUCCUGACCUCAUGAUCCAUCCGCCUUGGCCUCCCAAAAGUGCUGGGAUUACAGGCCUGAGCCACCACGCCCUGCUGGUUUAUUUUAUUUUUUGGCAUGAAUACCACAGCUGGGAUGUCAUCUUCUCAAUGCAUAGUGGAGAUAUGCAAUGUCAGUCUGUCCAACUCCUGGUCCUGUUAGUUCAGGUGGUGGCAGCGGCUGCCGGGGCUUCUCCCCUACAUAGUUACUGUUUUCCCUUUGUCAUCCAUAAAUACCUUGGGGAGAUACUUCCAGACUAAGUGAAUGUCUGUUUCACUUCCAAGUUUUACCCACUUUUUUUUUUUUUUUUGAGAUGGAGUCUCACUUUUGCCGAGGCUGUAGUGCAAUGGCGCCAUCUCAGCUCACUGCAACCUCCGCCUCCCAGGUUCAAGCAAUUCCCCCGUCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCACGCGCCACCAUGCCCAGGUAAUUUUUUUUAUUUUUAGUAGAGACGGGGUUUCACCGUGUUGCCCAGGCUGGUCUCCAACUCCUGAGCUCAGGCAGUCCACCUGCCUCAGCCUCCCAAGGUGCUAGGAUUACAGGCGUGAGCCACCGUGCCCGGCCUACCCACUAAUUAAUUUCAGCAUCCACUGGUGGGUCUUGCAAUGCAGUAAUUAUUAACUUAGUUUUCAAAGGUGAUUUUUGCAUUUUCCUCAUUCCUUUGACGUUUAUUAAUUGGAAUUCAUCUCUAAGAAAGAGCAGUCCCUUCAGCUUUUUUCCCUUUUUUUUUUUUGAG2000000006ACAGGGUCUUGCUCUGCGGCUCAGGCUGCAGUGCAGUGGCUCGAUCACGGCUCACUGCAGCCUCGACCUCCCGGGCUCACGUGAUCUCCCAUCUCAGCCUCCUGAGUAACCAGAACCACAGGUGCUCACCACCAUGCCCAGCUGACUUUUUGUAUUUUUUGUAGAGAUGGGGUUUACCCAUGUUGCUCAGGCUGGUCUCAAAUUUUCGAGCUCAAGUGAUCCGCCCGCCUUGGCCUCCCAAAAGGCAUGAGCCACUGCGCCUGACCUACGAUUUCUUUCUUUAUAUAUCAGUAUGAACGCAAGGGCUGUUUGUUGGAUUCUGUGAGUCAUAAUCUGAUACUGUUUCCACGCUUUGGCCAUUGGGAGCUCCUGGAGAUUGUCUCCUGUGCCCUAUCCUUAUUUAAGCACUUGUUUAUUUUGGGAUGUCUUCAGUUUUCCUUGUCCCAGCUCUGCACCCAGCUGCUUCUCCAGGGAGCCCUCCCUCACUGGAGACUGGGAUUUAGCAACCAAGACCUGGGCACUGGCUGUGCUUGUUGCUUCUGGGCCCUCCUGGGACAGAGCUGGGAAGUGGAUCUAUGACACGUGCUUGUGCAUUUACCCGCCCUGUUGGUUUCUGUAGCUGUCUAGUUCCUGCUGUUCCUGUCUCACCUGCCCCUUUCCUUAUGUGUAGUUUCUUCCUGUGACAGGGAGAAACCUGGCUCUCAGAUUGACAGGACAUUCGCUUAGGCCAUGUCAGUGCUGUAGGUGAACUGUUCAACCUGUGCCCCAGGGAGGCGCAGUCACUAUGGAGGCACCUUACUUCCUUAAUCGUGUACUGUUGUUUUUGUGUUUGACCUGUAGCAUCUAAGUACUGGUUUCAAAAGUUGCCUAGAUGAGUUCUUUUCUUUCUUUCCACCUCCUGCAAAUUAUGUGAUUUGCAUAAUUUGUACAUAGUUAGGUUCAUUUGUUAGUUUGUAUUCCUUUUGGCUUCCCCCAUAUCCUCGUUGACUUUUUCUUUCUUUUGUAACUUACAUAUGUUAUGAAAUUUAUAUGAGGAUAUAUAAUUUUCAUAAAUGUUUAUGGUUUACAUGUAUUAGUUGUUAUUAUUAAGAUCACCCUGGGAUUGACUGGCCAAGCAUUUGGUGGAAGAUAGCAAUAAAUAAUACAUCAUAAAAGACU2000000009UUAAUGUAAAAAUAAAGCCAUGAAAGUACCAAGAAAUAAAUCUUCUCAUUUUAAUUACAUCAGCUUGUCUGUGAUCAUGUAGCCUAAGGUAGGCCAGAGUUAAUUUUUGUGUUAUCUAUACACGUUAUUGAAGCGAAUUAUAAAAUGUUUUAGCAUGUUAAUUACUUGUAAAUUAAUAUCUACAUAUAAAAAUGUGAGCAUAUAUUCUAUUUAGUAUAUUAAUCCUUCAUAA2000000006ACAAGUAAUGCAAGUUAGUAUUAAUGAUAUCUUAAGACUUAACAUUCCUUUUUUAGUUUGUGUUGAAUAAAUGAACAUCUAAGAGUUCAUGAUGAUGCUUAAGGAAAGAAGCCUCAUGUUUACCUUUGGAAGUUGUAAGGCACUGACUCAUAAAAAUUGGCAAAUAAAAGGAAAGAAUCGGGCAUUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1106 2264 2496
Modification Positions m6A Y m6A
Genomic Coordinates 17:81880001:- 17:81878843:- 17:81878611:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
JkWoGWVwjNda
a7o5Kmjr4Tdp
JkWoGWVwjNda
a7o5Kmjr4Tdp