General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000428818
Gene ID:	ENSG00000235954
Gene Name:	TTC28-AS1
Sequence (UNICHARACTER ENCODING)	AAGCUCGACGCGCGCACUCUUGUCUGCUUACGAGGGCUCCUCCCUUCAGCUUUGGUCCCUCGGGGCGUCUGGGCAGCCUACGCUUUCCGACUAUGGAAAUGAUAUUAGACAAAAAGCAACUUCAAGUGGUUUUCUUAUUUGAGUUCAAAAUGGGUCAUAACGCAGCAGAGAUAЖCUUGAAACAUGAЖCAGCGCAUUUGGCCCAGGAЖCUACUAACGAЖCAUACAGGGCAGCUGUGAUUCAAGAAGUUUUGCAAAGCAGЖCUAGAGCCUUGAAUAUGAGGAACACAGUGGCCAGCCAUUGGAUGCUUCACUUCUUGAAGCAUCUUGACAGCUUUUUGCAGGUGAAAUGCUUCCACACCAGCAGGAUGCAGAAAAAUGCUUUCCAAGAGUUUGUUGAAUCCAGAAGCAUGGAUGUUUAUGCUGCAGGAAUAAACAAAUUUAUUUCUCGUUGGCAAAAAAGUGUUGAUUGUAAUGGUUCCUAUUUUGAUUAAUAAAGAUGUGUUUGAGCCUAGUUAUAAUGAUUUAAAAUUAAUGGUCCAAAAAUGCAAUUACUUUUGCACCACCACCAACACACACACACACCUACACAUUCUGGAUUUGAAUUCCAUGUUGAUUAUAUGCACUUGGAAUAUUUCUUUUCCAUCUGUGGAUUGUUCUGUCACUUAUUUUCUUUAAUAAAUGGGUUUCUGAACCUCUGUUGUAUUGACA
Sequence (SHORT NAMES ENCODING)	AAGCUCGACGCGCGCACUCUUGUCUGCUUACGAGGGCUCCUCCCUUCAGCUUUGGUCCCUCGGGGCGUCUGGGCAGCCUACGCUUUCCGACUAUGGAAAUGAUAUUAGACAAAAAGCAACUUCAAGUGGUUUUCUUAUUUGAGUUCAAAAUGGGUCAUAACGCAGCAGAGAUAm6ACUUGAAACAUGAm6ACAGCGCAUUUGGCCCAGGAm6ACUACUAACGAm6ACAUACAGGGCAGCUGUGAUUCAAGAAGUUUUGCAAAGCAGm6ACUAGAGCCUUGAAUAUGAGGAACACAGUGGCCAGCCAUUGGAUGCUUCACUUCUUGAAGCAUCUUGACAGCUUUUUGCAGGUGAAAUGCUUCCACACCAGCAGGAUGCAGAAAAAUGCUUUCCAAGAGUUUGUUGAAUCCAGAAGCAUGGAUGUUUAUGCUGCAGGAAUAAACAAAUUUAUUUCUCGUUGGCAAAAAAGUGUUGAUUGUAAUGGUUCCUAUUUUGAUUAAUAAAGAUGUGUUUGAGCCUAGUUAUAAUGAUUUAAAAUUAAUGGUCCAAAAAUGCAAUUACUUUUGCACCACCACCAACACACACACACACCUACACAUUCUGGAUUUGAAUUCCAUGUUGAUUAUAUGCACUUGGAAUAUUUCUUUUCCAUCUGUGGAUUGUUCUGUCACUUAUUUUCUUUAAUAAAUGGGUUUCUGAACCUCUGUUGUAUUGACA
Sequence (MODOMICS CODE ENCODING)	AAGCUCGACGCGCGCACUCUUGUCUGCUUACGAGGGCUCCUCCCUUCAGCUUUGGUCCCUCGGGGCGUCUGGGCAGCCUACGCUUUCCGACUAUGGAAAUGAUAUUAGACAAAAAGCAACUUCAAGUGGUUUUCUUAUUUGAGUUCAAAAUGGGUCAUAACGCAGCAGAGAUA2000000006ACUUGAAACAUGA2000000006ACAGCGCAUUUGGCCCAGGA2000000006ACUACUAACGA2000000006ACAUACAGGGCAGCUGUGAUUCAAGAAGUUUUGCAAAGCAG2000000006ACUAGAGCCUUGAAUAUGAGGAACACAGUGGCCAGCCAUUGGAUGCUUCACUUCUUGAAGCAUCUUGACAGCUUUUUGCAGGUGAAAUGCUUCCACACCAGCAGGAUGCAGAAAAAUGCUUUCCAAGAGUUUGUUGAAUCCAGAAGCAUGGAUGUUUAUGCUGCAGGAAUAAACAAAUUUAUUUCUCGUUGGCAAAAAAGUGUUGAUUGUAAUGGUUCCUAUUUUGAUUAAUAAAGAUGUGUUUGAGCCUAGUUAUAAUGAUUUAAAAUUAAUGGUCCAAAAAUGCAAUUACUUUUGCACCACCACCAACACACACACACACCUACACAUUCUGGAUUUGAAUUCCAUGUUGAUUAUAUGCACUUGGAAUAUUUCUUUUCCAUCUGUGGAUUGUUCUGUCACUUAUUUUCUUUAAUAAAUGGGUUUCUGAACCUCUGUUGUAUUGACA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	174	187	207	218	259
Modification Positions	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	22:27924431:+	22:27924444:+	22:27924464:+	22:27924475:+	22:27924516:+
Level of Experimental Evidence	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VyCX26p5UBRL BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8