Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000431534
Gene ID: ENSG00000100413
Gene Name: POLR3H
Sequence (UNICHARACTER ENCODING) AGCGGCUGUGCGCGGUGCGUGGUGCGUGGUGCGUGAUACGAGCGGCGGCACGUGGCGCGGGUGCGGGGCGUGGAGUGGCGUGGCGUGGAGUGGCGUGGCGUGGCGGGGUCUCGCGGCGCGGGCGCGCACCCGGAGCUGUGGACGGAGAGUGCCUCCCUCUGGCCUCAGUUUCCUCAUGUUGUAGUAGCGGAGCAUGGCCCGGACCGGGCCCCCGAGЖCCGCCCCGUGCAACCUCACCGCCAGCCUGGGGGCCUCAGCGACUGGGACGGGACCAAGGGGCUCGGGGAUUCUCCCUGCCCCCGGCCCUGGUGCGUGACUGACCCUCCUGUUCCCAGAGCCCCCAGCGCAGGCCGGGAUGUUCGUCCUGGUGGAAAUGGUGGACACCGUCCGGAUCCCCCCUUGGCAGUUUGAGAGGAAGCUCAACGACUCCAUUGCCGAGGAGCUGAACAAGAAGUUGGCCAACAAGGUCGUGUACAACGUGGGACUCUGCAUUUGUCUGUUUGAUAUCACCAAACUGGAGGAUGCCUAUGUAUUCCCUGGGGAUGGCGCAUCACACACCAAAGUCCAUUUUCGCUGCGUGGUGUUUCAPCCAUUCCUAGAUGAGAUUCUCAUUGGGAAGAUCAAAGGCUGCAGCCCAGAAGGAGUGCACGGUAACAGUGGCCCUGACGCCUCAGACAAGACUUGGGAACACUGUGGGGGCAGGAGUCUCUCUAGGCUUCUUCGAUGACAUUCUCAUCCCCCCAGAGUCACUGCAGCAGCCAGCCAAGUUCGACGAAGCGGAGCAGGUGUGGGUGUGGGAGUACGAGACGGAGGAAGGAGCACACGACCUCUACAUGGACACCGGCGAGGAGAUCCGCUUCCGGGUGGUGGACGAGAGCUUUGUUGACACGUCCCCCACAGGGCCCAGCUCAGCAGAUGCCACCACUUCCAGUGAGGAGCUGCCAAAGAAGGAGGCUCCGUACACGCUUGUGGGAUCCAUCAGUGAGCCAGGCCUGGGCCUUCUCUCCUGGUGGACCAGCAACUAGCCCUGGGGCUGGACAGUGGЖCCCUACCAGCCUGCGGGAAGGUGGUAUGGCCGGCUGUGAAGACAACAGCAGCUGAGGCCGAUGCUAAGGAGAUAGUGUCUCGAGCUGGЖCAGUGAGGCAAGGCCAGGAGUGCCCACCAGCUUGCCCCGCUCCPCCACCAUCUAGGCCCUGCUCCPCCUUCACUGCAGUGAUGGAUCCAUCUGUGGCUGUGGCUGUUGGGCCUCCACUGACCUUGЖCUGAAAAGACCCUUCCUGGЖCCCUGGЖCUUGACAACAAACGGCACAGACACCAAUCACUCACAGAЖCAGUCACUGGUUUUGGAUUCUUGUUUUCCUUGCAAGAACAAAAGGUUCUCUAGAAUCCUUCAGCCACCAAUGAAAUGAUCAGGCAGGAGAAAAЖCUPUAGAUGGGAGUCUUGUCAUCAAAAAUAAAUACAGUUGCAUGG
Sequence (SHORT NAMES ENCODING) AGCGGCUGUGCGCGGUGCGUGGUGCGUGGUGCGUGAUACGAGCGGCGGCACGUGGCGCGGGUGCGGGGCGUGGAGUGGCGUGGCGUGGAGUGGCGUGGCGUGGCGGGGUCUCGCGGCGCGGGCGCGCACCCGGAGCUGUGGACGGAGAGUGCCUCCCUCUGGCCUCAGUUUCCUCAUGUUGUAGUAGCGGAGCAUGGCCCGGACCGGGCCCCCGAGm6ACCGCCCCGUGCAACCUCACCGCCAGCCUGGGGGCCUCAGCGACUGGGACGGGACCAAGGGGCUCGGGGAUUCUCCCUGCCCCCGGCCCUGGUGCGUGACUGACCCUCCUGUUCCCAGAGCCCCCAGCGCAGGCCGGGAUGUUCGUCCUGGUGGAAAUGGUGGACACCGUCCGGAUCCCCCCUUGGCAGUUUGAGAGGAAGCUCAACGACUCCAUUGCCGAGGAGCUGAACAAGAAGUUGGCCAACAAGGUCGUGUACAACGUGGGACUCUGCAUUUGUCUGUUUGAUAUCACCAAACUGGAGGAUGCCUAUGUAUUCCCUGGGGAUGGCGCAUCACACACCAAAGUCCAUUUUCGCUGCGUGGUGUUUCAYCCAUUCCUAGAUGAGAUUCUCAUUGGGAAGAUCAAAGGCUGCAGCCCAGAAGGAGUGCACGGUAACAGUGGCCCUGACGCCUCAGACAAGACUUGGGAACACUGUGGGGGCAGGAGUCUCUCUAGGCUUCUUCGAUGACAUUCUCAUCCCCCCAGAGUCACUGCAGCAGCCAGCCAAGUUCGACGAAGCGGAGCAGGUGUGGGUGUGGGAGUACGAGACGGAGGAAGGAGCACACGACCUCUACAUGGACACCGGCGAGGAGAUCCGCUUCCGGGUGGUGGACGAGAGCUUUGUUGACACGUCCCCCACAGGGCCCAGCUCAGCAGAUGCCACCACUUCCAGUGAGGAGCUGCCAAAGAAGGAGGCUCCGUACACGCUUGUGGGAUCCAUCAGUGAGCCAGGCCUGGGCCUUCUCUCCUGGUGGACCAGCAACUAGCCCUGGGGCUGGACAGUGGm6ACCCUACCAGCCUGCGGGAAGGUGGUAUGGCCGGCUGUGAAGACAACAGCAGCUGAGGCCGAUGCUAAGGAGAUAGUGUCUCGAGCUGGm6ACAGUGAGGCAAGGCCAGGAGUGCCCACCAGCUUGCCCCGCUCCYCCACCAUCUAGGCCCUGCUCCYCCUUCACUGCAGUGAUGGAUCCAUCUGUGGCUGUGGCUGUUGGGCCUCCACUGACCUUGm6ACUGAAAAGACCCUUCCUGGm6ACCCUGGm6ACUUGACAACAAACGGCACAGACACCAAUCACUCACAGAm6ACAGUCACUGGUUUUGGAUUCUUGUUUUCCUUGCAAGAACAAAAGGUUCUCUAGAAUCCUUCAGCCACCAAUGAAAUGAUCAGGCAGGAGAAAAm6ACUYUAGAUGGGAGUCUUGUCAUCAAAAAUAAAUACAGUUGCAUGG
Sequence (MODOMICS CODE ENCODING) AGCGGCUGUGCGCGGUGCGUGGUGCGUGGUGCGUGAUACGAGCGGCGGCACGUGGCGCGGGUGCGGGGCGUGGAGUGGCGUGGCGUGGAGUGGCGUGGCGUGGCGGGGUCUCGCGGCGCGGGCGCGCACCCGGAGCUGUGGACGGAGAGUGCCUCCCUCUGGCCUCAGUUUCCUCAUGUUGUAGUAGCGGAGCAUGGCCCGGACCGGGCCCCCGAG2000000006ACCGCCCCGUGCAACCUCACCGCCAGCCUGGGGGCCUCAGCGACUGGGACGGGACCAAGGGGCUCGGGGAUUCUCCCUGCCCCCGGCCCUGGUGCGUGACUGACCCUCCUGUUCCCAGAGCCCCCAGCGCAGGCCGGGAUGUUCGUCCUGGUGGAAAUGGUGGACACCGUCCGGAUCCCCCCUUGGCAGUUUGAGAGGAAGCUCAACGACUCCAUUGCCGAGGAGCUGAACAAGAAGUUGGCCAACAAGGUCGUGUACAACGUGGGACUCUGCAUUUGUCUGUUUGAUAUCACCAAACUGGAGGAUGCCUAUGUAUUCCCUGGGGAUGGCGCAUCACACACCAAAGUCCAUUUUCGCUGCGUGGUGUUUCA2000000009UCCAUUCCUAGAUGAGAUUCUCAUUGGGAAGAUCAAAGGCUGCAGCCCAGAAGGAGUGCACGGUAACAGUGGCCCUGACGCCUCAGACAAGACUUGGGAACACUGUGGGGGCAGGAGUCUCUCUAGGCUUCUUCGAUGACAUUCUCAUCCCCCCAGAGUCACUGCAGCAGCCAGCCAAGUUCGACGAAGCGGAGCAGGUGUGGGUGUGGGAGUACGAGACGGAGGAAGGAGCACACGACCUCUACAUGGACACCGGCGAGGAGAUCCGCUUCCGGGUGGUGGACGAGAGCUUUGUUGACACGUCCCCCACAGGGCCCAGCUCAGCAGAUGCCACCACUUCCAGUGAGGAGCUGCCAAAGAAGGAGGCUCCGUACACGCUUGUGGGAUCCAUCAGUGAGCCAGGCCUGGGCCUUCUCUCCUGGUGGACCAGCAACUAGCCCUGGGGCUGGACAGUGG2000000006ACCCUACCAGCCUGCGGGAAGGUGGUAUGGCCGGCUGUGAAGACAACAGCAGCUGAGGCCGAUGCUAAGGAGAUAGUGUCUCGAGCUGG2000000006ACAGUGAGGCAAGGCCAGGAGUGCCCACCAGCUUGCCCCGCUCC2000000009UCCACCAUCUAGGCCCUGCUCC2000000009UCCUUCACUGCAGUGAUGGAUCCAUCUGUGGCUGUGGCUGUUGGGCCUCCACUGACCUUG2000000006ACUGAAAAGACCCUUCCUGG2000000006ACCCUGG2000000006ACUUGACAACAAACGGCACAGACACCAAUCACUCACAGA2000000006ACAGUCACUGGUUUUGGAUUCUUGUUUUCCUUGCAAGAACAAAAGGUUCUCUAGAAUCCUUCAGCCACCAAUGAAAUGAUCAGGCAGGAGAAAA2000000006ACU2000000009UUAGAUGGGAGUCUUGUCAUCAAAAAUAAAUACAGUUGCAUGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 217 588 1044 1133 1177 1199 1259 1279 1286 1325 1419 1422
Modification Positions m6A Y m6A m6A Y Y m6A m6A m6A m6A m6A Y
Genomic Coordinates 22:41544239:- 22:41532720:- 22:41529263:- 22:41529174:- 22:41529130:- 22:41529108:- 22:41529048:- 22:41529028:- 22:41529021:- 22:41528982:- 22:41528888:- 22:41528885:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
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