Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000412832
Gene ID: ENSG00000100221
Gene Name: JOSD1
Sequence (UNICHARACTER ENCODING) AGUUGGCGGCGCGCACUCCAGGUGGCGGCCGGCUGCGGUGAGGGGACCGCCAGCGGCGAGCAGUCCCGGCGGCCCUGGGUGACAAAGCAUAAAUCAUGGЖCACCAGAGAAUAAGGUGGЖCCUCAGGAAUCCGGAAAAGЖCUGAGAAGCUUACAUUCUUCCUCUAGAGGGAAGAGUGGGGUGUUUAUAGCCAUCUCUGGAЖCCUAAAACAAAAAACAUGAGUUGUGUGCCAUGGAAAGGAGACAAGGCCAAAUCUGAAUCAUUGGAGCUGCCCCAGGCAGCACCCCCACAAAUCUACCAUGAGAAACAGCGCAGGGAGCUUUGUGCCCUCCACGCCCUCAAUAACGUCUUCCAGGACAGCAAUGCCUUCACCCGGGAUACGCUGCAAGAGAUUUUCCAGAGGUUGUCUCCAAACACCAUGGUGACACCUCACAAGAAGAGCAUGCUGGGAAAUGGCAACUACGAUGUGAAUGUCAUUAUGGCAGCACUUCAGACCAAAGGCUAUGAAGCUGUUUGGUGGGACAAGCGCAG
Sequence (SHORT NAMES ENCODING) AGUUGGCGGCGCGCACUCCAGGUGGCGGCCGGCUGCGGUGAGGGGACCGCCAGCGGCGAGCAGUCCCGGCGGCCCUGGGUGACAAAGCAUAAAUCAUGGm6ACACCAGAGAAUAAGGUGGm6ACCUCAGGAAUCCGGAAAAGm6ACUGAGAAGCUUACAUUCUUCCUCUAGAGGGAAGAGUGGGGUGUUUAUAGCCAUCUCUGGAm6ACCUAAAACAAAAAACAUGAGUUGUGUGCCAUGGAAAGGAGACAAGGCCAAAUCUGAAUCAUUGGAGCUGCCCCAGGCAGCACCCCCACAAAUCUACCAUGAGAAACAGCGCAGGGAGCUUUGUGCCCUCCACGCCCUCAAUAACGUCUUCCAGGACAGCAAUGCCUUCACCCGGGAUACGCUGCAAGAGAUUUUCCAGAGGUUGUCUCCAAACACCAUGGUGACACCUCACAAGAAGAGCAUGCUGGGAAAUGGCAACUACGAUGUGAAUGUCAUUAUGGCAGCACUUCAGACCAAAGGCUAUGAAGCUGUUUGGUGGGACAAGCGCAG
Sequence (MODOMICS CODE ENCODING) AGUUGGCGGCGCGCACUCCAGGUGGCGGCCGGCUGCGGUGAGGGGACCGCCAGCGGCGAGCAGUCCCGGCGGCCCUGGGUGACAAAGCAUAAAUCAUGG2000000006ACACCAGAGAAUAAGGUGG2000000006ACCUCAGGAAUCCGGAAAAG2000000006ACUGAGAAGCUUACAUUCUUCCUCUAGAGGGAAGAGUGGGGUGUUUAUAGCCAUCUCUGGA2000000006ACCUAAAACAAAAAACAUGAGUUGUGUGCCAUGGAAAGGAGACAAGGCCAAAUCUGAAUCAUUGGAGCUGCCCCAGGCAGCACCCCCACAAAUCUACCAUGAGAAACAGCGCAGGGAGCUUUGUGCCCUCCACGCCCUCAAUAACGUCUUCCAGGACAGCAAUGCCUUCACCCGGGAUACGCUGCAAGAGAUUUUCCAGAGGUUGUCUCCAAACACCAUGGUGACACCUCACAAGAAGAGCAUGCUGGGAAAUGGCAACUACGAUGUGAAUGUCAUUAUGGCAGCACUUCAGACCAAAGGCUAUGAAGCUGUUUGGUGGGACAAGCGCAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 100 119 139 200
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 22:38700103:- 22:38700084:- 22:38700064:- 22:38700003:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
8cMbzB4aD5Se
KTLz8piFYdwC
Lny8GcCeVGc9
UKen6WEino9G
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BtsJQJ3DteUq
Yfn77uLS5tv8
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BtsJQJ3DteUq
Yfn77uLS5tv8