Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000610767
Gene ID: ENSG00000100379
Gene Name: KCTD17
Sequence (UNICHARACTER ENCODING) AUGAGGAUGGAGGCCGGGGAGGCAGCGCCGCCGGCGGGGGCGGGCGGCCGCGCCGCAGGCGGCUGGGGCAAGUGGGUGCGGCUCAACGUGGGGGGCACGGUGUUCCUGACCACCCGGCAGACGCUGUGCCGCGAGCAGAAGUCCUUCCUCAGCCGCCUGUGCCAGGGGGAAGAGCUGCAGUCGGACCGGGAUGAGACCGGGGCCUACCUCAUUGACCGUGACCCCACCUACUUCGGGCCCAUCCUGAACUUCCUCCGGCAUGGCAAGCUGGUGCUGGACAAGGACAUGGCUGAGGAGGGGGUCCUGGAGGAAGCCGAGUUCUACAACAUCGGCCCGCUGAUCCGCAUCAUCAAAGACCGGAUGGAAGAGAAGGACUACACGGUCACCCAGGUCCCACCCAAGCACGUGUACCGCGUGCUGCAGUGCCAGGAGGAGGAGCUCACGCAAAUGGUCUCCACCAUGUCUGAUGGCUGGCGCUUCGAGCAGCUGGUGAACAUCGGCUCCUCCUACAACUACGGCAGCGAGGACCAGGCAGAGUUCCUGUGUGUGGUGUCCAAGGAGCUCCACAGCACCCCAAACGGGCUGAGCUCAGAGUCCAGCCGCAAAACCAAGCUGUUACAAGCCAGAGGCACCCGGAUGUGAGGCCCCAGAUCACCUCCAGGGACUUGGGGUUCCCAUCUGAAAUCCUPUAUUUUUGUACCAUGGGGUGGGCCCCGGGCCUGAGAAGGAAGAAGCACCCUCUCCCCGGCCUCCUCUGUCUGCACCCGUGGGGCUGUGACUUACUCCUGCCUCCAGGGGCGGGGCGGGGCCCCCCUGGGACCUCUUAAGGCCCAAGGUGGGCCCCAGGACCUCUGGGCAGAGUGGЖCUGCUCAUGGCAGAUGUGUGGCAAUGUCUGGCUGUGUCUCUCCGGCACCUGCGUCCCCUCUCCCGGGCUCCCCUGCUGCAUGGUGGAUGUGCUCCUUCCUGGCCCGGUCACAUUGCCUCCUUGAGCCUUAGUCCAGGGGGUCACUCCPCCCACCCCACCUACCUCACAGGGUUGUUGUGAGGGUGCACAGAGGAGCAAAGUCCCUGAAGGCCCUCAGGCAGUAUAUAGGGGCCGCCCACCUUCAGCUGCCCUGGGAUGGGAAGGACCCAGCCCGACCCCUGGGCAUAЖCACUGUGUUUGCAAAUGGAGAUUCAGGUAUUGGGGAUGCAGGUUGUGGGGAGCUGGCCUGGCAGAGUAGGGGUAGUUGGCUUGGCCUUCUCUUUGGUGAUCCCACCCCCAGCCAUUUGCAUUGCUGGCCCAGCGCCUGGCCUGGGGGGCGGGGAGAGGCAGCAGAAGGGGCUGGGCAGGGGCGGUGGAGGACUCAGGAACUGCCCGGGGAGAGUGGGUAUGGCGGCUGAGCCAGGGGCCCUCCUGUGUUUGACUUCCCGGGAUGGGUCCUUGCUUCUCAGCUGUGUCCGACCCCACCAUGUAAUAAAACCCAAAGGAACAGCCC
Sequence (SHORT NAMES ENCODING) AUGAGGAUGGAGGCCGGGGAGGCAGCGCCGCCGGCGGGGGCGGGCGGCCGCGCCGCAGGCGGCUGGGGCAAGUGGGUGCGGCUCAACGUGGGGGGCACGGUGUUCCUGACCACCCGGCAGACGCUGUGCCGCGAGCAGAAGUCCUUCCUCAGCCGCCUGUGCCAGGGGGAAGAGCUGCAGUCGGACCGGGAUGAGACCGGGGCCUACCUCAUUGACCGUGACCCCACCUACUUCGGGCCCAUCCUGAACUUCCUCCGGCAUGGCAAGCUGGUGCUGGACAAGGACAUGGCUGAGGAGGGGGUCCUGGAGGAAGCCGAGUUCUACAACAUCGGCCCGCUGAUCCGCAUCAUCAAAGACCGGAUGGAAGAGAAGGACUACACGGUCACCCAGGUCCCACCCAAGCACGUGUACCGCGUGCUGCAGUGCCAGGAGGAGGAGCUCACGCAAAUGGUCUCCACCAUGUCUGAUGGCUGGCGCUUCGAGCAGCUGGUGAACAUCGGCUCCUCCUACAACUACGGCAGCGAGGACCAGGCAGAGUUCCUGUGUGUGGUGUCCAAGGAGCUCCACAGCACCCCAAACGGGCUGAGCUCAGAGUCCAGCCGCAAAACCAAGCUGUUACAAGCCAGAGGCACCCGGAUGUGAGGCCCCAGAUCACCUCCAGGGACUUGGGGUUCCCAUCUGAAAUCCUYUAUUUUUGUACCAUGGGGUGGGCCCCGGGCCUGAGAAGGAAGAAGCACCCUCUCCCCGGCCUCCUCUGUCUGCACCCGUGGGGCUGUGACUUACUCCUGCCUCCAGGGGCGGGGCGGGGCCCCCCUGGGACCUCUUAAGGCCCAAGGUGGGCCCCAGGACCUCUGGGCAGAGUGGm6ACUGCUCAUGGCAGAUGUGUGGCAAUGUCUGGCUGUGUCUCUCCGGCACCUGCGUCCCCUCUCCCGGGCUCCCCUGCUGCAUGGUGGAUGUGCUCCUUCCUGGCCCGGUCACAUUGCCUCCUUGAGCCUUAGUCCAGGGGGUCACUCCYCCCACCCCACCUACCUCACAGGGUUGUUGUGAGGGUGCACAGAGGAGCAAAGUCCCUGAAGGCCCUCAGGCAGUAUAUAGGGGCCGCCCACCUUCAGCUGCCCUGGGAUGGGAAGGACCCAGCCCGACCCCUGGGCAUAm6ACACUGUGUUUGCAAAUGGAGAUUCAGGUAUUGGGGAUGCAGGUUGUGGGGAGCUGGCCUGGCAGAGUAGGGGUAGUUGGCUUGGCCUUCUCUUUGGUGAUCCCACCCCCAGCCAUUUGCAUUGCUGGCCCAGCGCCUGGCCUGGGGGGCGGGGAGAGGCAGCAGAAGGGGCUGGGCAGGGGCGGUGGAGGACUCAGGAACUGCCCGGGGAGAGUGGGUAUGGCGGCUGAGCCAGGGGCCCUCCUGUGUUUGACUUCCCGGGAUGGGUCCUUGCUUCUCAGCUGUGUCCGACCCCACCAUGUAAUAAAACCCAAAGGAACAGCCC
Sequence (MODOMICS CODE ENCODING) AUGAGGAUGGAGGCCGGGGAGGCAGCGCCGCCGGCGGGGGCGGGCGGCCGCGCCGCAGGCGGCUGGGGCAAGUGGGUGCGGCUCAACGUGGGGGGCACGGUGUUCCUGACCACCCGGCAGACGCUGUGCCGCGAGCAGAAGUCCUUCCUCAGCCGCCUGUGCCAGGGGGAAGAGCUGCAGUCGGACCGGGAUGAGACCGGGGCCUACCUCAUUGACCGUGACCCCACCUACUUCGGGCCCAUCCUGAACUUCCUCCGGCAUGGCAAGCUGGUGCUGGACAAGGACAUGGCUGAGGAGGGGGUCCUGGAGGAAGCCGAGUUCUACAACAUCGGCCCGCUGAUCCGCAUCAUCAAAGACCGGAUGGAAGAGAAGGACUACACGGUCACCCAGGUCCCACCCAAGCACGUGUACCGCGUGCUGCAGUGCCAGGAGGAGGAGCUCACGCAAAUGGUCUCCACCAUGUCUGAUGGCUGGCGCUUCGAGCAGCUGGUGAACAUCGGCUCCUCCUACAACUACGGCAGCGAGGACCAGGCAGAGUUCCUGUGUGUGGUGUCCAAGGAGCUCCACAGCACCCCAAACGGGCUGAGCUCAGAGUCCAGCCGCAAAACCAAGCUGUUACAAGCCAGAGGCACCCGGAUGUGAGGCCCCAGAUCACCUCCAGGGACUUGGGGUUCCCAUCUGAAAUCCU2000000009UUAUUUUUGUACCAUGGGGUGGGCCCCGGGCCUGAGAAGGAAGAAGCACCCUCUCCCCGGCCUCCUCUGUCUGCACCCGUGGGGCUGUGACUUACUCCUGCCUCCAGGGGCGGGGCGGGGCCCCCCUGGGACCUCUUAAGGCCCAAGGUGGGCCCCAGGACCUCUGGGCAGAGUGG2000000006ACUGCUCAUGGCAGAUGUGUGGCAAUGUCUGGCUGUGUCUCUCCGGCACCUGCGUCCCCUCUCCCGGGCUCCCCUGCUGCAUGGUGGAUGUGCUCCUUCCUGGCCCGGUCACAUUGCCUCCUUGAGCCUUAGUCCAGGGGGUCACUCC2000000009UCCCACCCCACCUACCUCACAGGGUUGUUGUGAGGGUGCACAGAGGAGCAAAGUCCCUGAAGGCCCUCAGGCAGUAUAUAGGGGCCGCCCACCUUCAGCUGCCCUGGGAUGGGAAGGACCCAGCCCGACCCCUGGGCAUA2000000006ACACUGUGUUUGCAAAUGGAGAUUCAGGUAUUGGGGAUGCAGGUUGUGGGGAGCUGGCCUGGCAGAGUAGGGGUAGUUGGCUUGGCCUUCUCUUUGGUGAUCCCACCCCCAGCCAUUUGCAUUGCUGGCCCAGCGCCUGGCCUGGGGGGCGGGGAGAGGCAGCAGAAGGGGCUGGGCAGGGGCGGUGGAGGACUCAGGAACUGCCCGGGGAGAGUGGGUAUGGCGGCUGAGCCAGGGGCCCUCCUGUGUUUGACUUCCCGGGAUGGGUCCUUGCUUCUCAGCUGUGUCCGACCCCACCAUGUAAUAAAACCCAAAGGAACAGCCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 689 865 1013 1153
Modification Positions Y m6A Y m6A
Genomic Coordinates 22:37062601:+ 22:37062777:+ 22:37062925:+ 22:37063065:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8