Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000544786
Gene ID: ENSG00000100030
Gene Name: MAPK1
Sequence (UNICHARACTER ENCODING) AUGGCGGCGGCGGCGGCGGCGGGCGCGGGCCCGGAGAUGGUCCGCGGGCAGGUGUUCGACGUGGGGCCGCGCUACACCAACCUCUCGUACAUCGGCGAGGGCGCCUACGGCAUGGUGUGCUCUGCUUAUGAUAAUGUCAACAAAGUUCGAGUAGCUAUCAAGAAAAUCAGCCCCUUUGAGCACCAGACCUACUGCCAGAGAACCCUGAGGGAGAUAAAAAUCUUACUGCGCUUCAGACAUGAGAACAUCAUUGGAAUCAAUGACAUUAUUCGAGCACCAACCAUCGAGCAAAUGAAAGAUGUAUAUAUAGUACAGGACCUCAUGGAAACAGAUCUPUACAAGCUCUUGAAGЖCACAACACCUCAGCAAUGЖCCAUAUCUGCUAUUUUCUCUACCAGAUCCUCAGAGGGUUAAAAUAUAUCCAUUCAGCUAACGUUCUGCACCGUGACCUCAAGCCUUCCAACCUGCUGCUCAACACCACCUGUGAUCUCAAGAUCUGUGACUUUGGCCUGGCCCGUGUUGCAGAUCCAGACCAUGAUCACACAGGGUUCCUGACAGAAUAUGUGGCCACACGUUGGUACAGGGCUCCAGAAAUUAUGUUGAAUUCCAAGGGCUACACCAAGUCCAUUGAUAUUUGGUCUGUAGGCUGCAUUCUGGCAGAAAUGCUUUCUAACAGGCCCAUCUUUCCAGGGAAGCAUUAUCUUGACCAGCUGAЖCCACAUUUUGGCUCUGGACUUAUUGGACAAAAUGUUGACAUUCAACCCACACAAGAGGAUUGAAGUAGAACAGGCUCUGGCCCACCCAUAUCUGGAGCAGUAUUACGACCCGAGUGACGAGCCCAUCGCCGAAGCACCAUUCAAGUUCGACAUGGAAUUGGAUGACUUGCCUAAGGAAAAGCUCAAAGAACUAAUUUUUGAAGAGACUGCUAGAUUCCAGCCAGGAUACAGAUCUUAA
Sequence (SHORT NAMES ENCODING) AUGGCGGCGGCGGCGGCGGCGGGCGCGGGCCCGGAGAUGGUCCGCGGGCAGGUGUUCGACGUGGGGCCGCGCUACACCAACCUCUCGUACAUCGGCGAGGGCGCCUACGGCAUGGUGUGCUCUGCUUAUGAUAAUGUCAACAAAGUUCGAGUAGCUAUCAAGAAAAUCAGCCCCUUUGAGCACCAGACCUACUGCCAGAGAACCCUGAGGGAGAUAAAAAUCUUACUGCGCUUCAGACAUGAGAACAUCAUUGGAAUCAAUGACAUUAUUCGAGCACCAACCAUCGAGCAAAUGAAAGAUGUAUAUAUAGUACAGGACCUCAUGGAAACAGAUCUYUACAAGCUCUUGAAGm6ACACAACACCUCAGCAAUGm6ACCAUAUCUGCUAUUUUCUCUACCAGAUCCUCAGAGGGUUAAAAUAUAUCCAUUCAGCUAACGUUCUGCACCGUGACCUCAAGCCUUCCAACCUGCUGCUCAACACCACCUGUGAUCUCAAGAUCUGUGACUUUGGCCUGGCCCGUGUUGCAGAUCCAGACCAUGAUCACACAGGGUUCCUGACAGAAUAUGUGGCCACACGUUGGUACAGGGCUCCAGAAAUUAUGUUGAAUUCCAAGGGCUACACCAAGUCCAUUGAUAUUUGGUCUGUAGGCUGCAUUCUGGCAGAAAUGCUUUCUAACAGGCCCAUCUUUCCAGGGAAGCAUUAUCUUGACCAGCUGAm6ACCACAUUUUGGCUCUGGACUUAUUGGACAAAAUGUUGACAUUCAACCCACACAAGAGGAUUGAAGUAGAACAGGCUCUGGCCCACCCAUAUCUGGAGCAGUAUUACGACCCGAGUGACGAGCCCAUCGCCGAAGCACCAUUCAAGUUCGACAUGGAAUUGGAUGACUUGCCUAAGGAAAAGCUCAAAGAACUAAUUUUUGAAGAGACUGCUAGAUUCCAGCCAGGAUACAGAUCUUAA
Sequence (MODOMICS CODE ENCODING) AUGGCGGCGGCGGCGGCGGCGGGCGCGGGCCCGGAGAUGGUCCGCGGGCAGGUGUUCGACGUGGGGCCGCGCUACACCAACCUCUCGUACAUCGGCGAGGGCGCCUACGGCAUGGUGUGCUCUGCUUAUGAUAAUGUCAACAAAGUUCGAGUAGCUAUCAAGAAAAUCAGCCCCUUUGAGCACCAGACCUACUGCCAGAGAACCCUGAGGGAGAUAAAAAUCUUACUGCGCUUCAGACAUGAGAACAUCAUUGGAAUCAAUGACAUUAUUCGAGCACCAACCAUCGAGCAAAUGAAAGAUGUAUAUAUAGUACAGGACCUCAUGGAAACAGAUCU2000000009UUACAAGCUCUUGAAG2000000006ACACAACACCUCAGCAAUG2000000006ACCAUAUCUGCUAUUUUCUCUACCAGAUCCUCAGAGGGUUAAAAUAUAUCCAUUCAGCUAACGUUCUGCACCGUGACCUCAAGCCUUCCAACCUGCUGCUCAACACCACCUGUGAUCUCAAGAUCUGUGACUUUGGCCUGGCCCGUGUUGCAGAUCCAGACCAUGAUCACACAGGGUUCCUGACAGAAUAUGUGGCCACACGUUGGUACAGGGCUCCAGAAAUUAUGUUGAAUUCCAAGGGCUACACCAAGUCCAUUGAUAUUUGGUCUGUAGGCUGCAUUCUGGCAGAAAUGCUUUCUAACAGGCCCAUCUUUCCAGGGAAGCAUUAUCUUGACCAGCUGA2000000006ACCACAUUUUGGCUCUGGACUUAUUGGACAAAAUGUUGACAUUCAACCCACACAAGAGGAUUGAAGUAGAACAGGCUCUGGCCCACCCAUAUCUGGAGCAGUAUUACGACCCGAGUGACGAGCCCAUCGCCGAAGCACCAUUCAAGUUCGACAUGGAAUUGGAUGACUUGCCUAAGGAAAAGCUCAAAGAACUAAUUUUUGAAGAGACUGCUAGAUUCCAGCCAGGAUACAGAUCUUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 336 352 371 713
Modification Positions Y m6A m6A m6A
Genomic Coordinates 22:21806006:- 22:21805990:- 22:21805971:- 22:21788705:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
Yfn77uLS5tv8
8cMbzB4aD5Se
93arJtwJmuS9
WiQcrNTGZHPT
BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
ArijeGVTwYBw
BkoLW2CBToyL
KTLz8piFYdwC
nfCHyrYzE6fB
BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8