Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000702041
Gene ID: ENSG00000291087
Gene Name: CRYBB2P1
Sequence (UNICHARACTER ENCODING) GAGUCCAGAAUGAGAAGAAGGAAAGCGGGGCCGGUUCCUUCAGGACCCGCCUCAGGGGGCACCGCGGCGGCUUGGGGACCACUUGGAGCCCCGUCCUGGGGAGAAAACAGCUCACGUCUAUGGCCCUGACUGCUUAGGCGGGAGCUGCGUGCAGCUCAGCUUCUCCGGGGCAUUUUUUUCUACACGCUGGGUGAGCUAUGAЖCAGGCCAACUGCAAGGGCGAGCAGUUUGUGUUUGAGAAGGGCGAGUACGCCCACUGGGACUGGUGGACCAGCAGCCAGAGGACAGACUCAGCAGCCUGAGGCCCAUCAAAGUGGUGGUUGGUGCCCGCCCCCCGCGCCCAAGGGUUGGGCAACUCCCGUCAUUGCUCAAUAACCAAUAGCCAUCAGAAAUACUACAAGAAAUUAUGAGUUUGGGGCUGGAGGAGAAGGUGGUUUAGCUCUUCUUCAAGACUCGUGCCAGUGACAGCCAAGAGCACAAGAUCAPCCUCUAUGAAAACCCCAACUUCACCGGGAAGAAGAUGGAAAUCAUAGAUGACGAUGUACCCAGCUUCCACGCCCAUGGCUACCAGGAGAAGGUGUCAUCUGUGUGGGUGCGGAGUGGCAUGUGGGUUGGCUACUAGUACCCUGGCUACCGUGGGCUGCAGUACCUGCUGGAGAAGGGAGACUACAAGGACAGCAGCGACUUUGGGGCCCGUCACCCUCAGGUACAGUCCGUGCGCUGCAPCCACGACAUGCAGGGGCACCAAUGUGGUGCCUUCCACCCCUCCAACUAGUGCCCACCCCACCAUGCCUCCUUCCCAGGACCCAGGUCUGCUGCCCAGGAACCCUCCAGACCUCCCAGAGAGUGAAUGAAGUGUGACUUGCAACUUG
Sequence (SHORT NAMES ENCODING) GAGUCCAGAAUGAGAAGAAGGAAAGCGGGGCCGGUUCCUUCAGGACCCGCCUCAGGGGGCACCGCGGCGGCUUGGGGACCACUUGGAGCCCCGUCCUGGGGAGAAAACAGCUCACGUCUAUGGCCCUGACUGCUUAGGCGGGAGCUGCGUGCAGCUCAGCUUCUCCGGGGCAUUUUUUUCUACACGCUGGGUGAGCUAUGAm6ACAGGCCAACUGCAAGGGCGAGCAGUUUGUGUUUGAGAAGGGCGAGUACGCCCACUGGGACUGGUGGACCAGCAGCCAGAGGACAGACUCAGCAGCCUGAGGCCCAUCAAAGUGGUGGUUGGUGCCCGCCCCCCGCGCCCAAGGGUUGGGCAACUCCCGUCAUUGCUCAAUAACCAAUAGCCAUCAGAAAUACUACAAGAAAUUAUGAGUUUGGGGCUGGAGGAGAAGGUGGUUUAGCUCUUCUUCAAGACUCGUGCCAGUGACAGCCAAGAGCACAAGAUCAYCCUCUAUGAAAACCCCAACUUCACCGGGAAGAAGAUGGAAAUCAUAGAUGACGAUGUACCCAGCUUCCACGCCCAUGGCUACCAGGAGAAGGUGUCAUCUGUGUGGGUGCGGAGUGGCAUGUGGGUUGGCUACUAGUACCCUGGCUACCGUGGGCUGCAGUACCUGCUGGAGAAGGGAGACUACAAGGACAGCAGCGACUUUGGGGCCCGUCACCCUCAGGUACAGUCCGUGCGCUGCAYCCACGACAUGCAGGGGCACCAAUGUGGUGCCUUCCACCCCUCCAACUAGUGCCCACCCCACCAUGCCUCCUUCCCAGGACCCAGGUCUGCUGCCCAGGAACCCUCCAGACCUCCCAGAGAGUGAAUGAAGUGUGACUUGCAACUUG
Sequence (MODOMICS CODE ENCODING) GAGUCCAGAAUGAGAAGAAGGAAAGCGGGGCCGGUUCCUUCAGGACCCGCCUCAGGGGGCACCGCGGCGGCUUGGGGACCACUUGGAGCCCCGUCCUGGGGAGAAAACAGCUCACGUCUAUGGCCCUGACUGCUUAGGCGGGAGCUGCGUGCAGCUCAGCUUCUCCGGGGCAUUUUUUUCUACACGCUGGGUGAGCUAUGA2000000006ACAGGCCAACUGCAAGGGCGAGCAGUUUGUGUUUGAGAAGGGCGAGUACGCCCACUGGGACUGGUGGACCAGCAGCCAGAGGACAGACUCAGCAGCCUGAGGCCCAUCAAAGUGGUGGUUGGUGCCCGCCCCCCGCGCCCAAGGGUUGGGCAACUCCCGUCAUUGCUCAAUAACCAAUAGCCAUCAGAAAUACUACAAGAAAUUAUGAGUUUGGGGCUGGAGGAGAAGGUGGUUUAGCUCUUCUUCAAGACUCGUGCCAGUGACAGCCAAGAGCACAAGAUCA2000000009UCCUCUAUGAAAACCCCAACUUCACCGGGAAGAAGAUGGAAAUCAUAGAUGACGAUGUACCCAGCUUCCACGCCCAUGGCUACCAGGAGAAGGUGUCAUCUGUGUGGGUGCGGAGUGGCAUGUGGGUUGGCUACUAGUACCCUGGCUACCGUGGGCUGCAGUACCUGCUGGAGAAGGGAGACUACAAGGACAGCAGCGACUUUGGGGCCCGUCACCCUCAGGUACAGUCCGUGCGCUGCA2000000009UCCACGACAUGCAGGGGCACCAAUGUGGUGCCUUCCACCCCUCCAACUAGUGCCCACCCCACCAUGCCUCCUUCCCAGGACCCAGGUCUGCUGCCCAGGAACCCUCCAGACCUCCCAGAGAGUGAAUGAAGUGUGACUUGCAACUUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 202 485 725
Modification Positions m6A Y Y
Genomic Coordinates 22:25455727:+ 22:25457281:+ 22:25459535:+
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
CxQaH6qDB9bC
dknfVe6BK8aP
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
JkWoGWVwjNda
Yfn77uLS5tv8
CxQaH6qDB9bC
dknfVe6BK8aP
Mk6ShCGm6RBJ