Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000488504
Gene ID: ENSG00000188130
Gene Name: MAPK12
Sequence (UNICHARACTER ENCODING) GCAGGCUCUGCGGGGUGGGCAGCUCCCGGGCCUGCCAUGAGCUCUCCGCCGCCCGCCCGCAGUGGCUUUUACCGCCAGGAGGUGACCAAGACGGCCUGGGAGGUGCGCGCCGUGUACCGGGACCUGCAGCCCGUGGGCUCGGGCGCCUACGGCGCGGUGUGCUCGGCCGUGGACGGCCGCACCGGCGCUAAGGUGGCCAUCAAGAAGCUGUAUCGGCCUUUCCAGUCCGAGCUGUUCGCCAAGCGCGCCUACCGCGAGCUGCGCCUGCUCAAGCACAUGCGCCACGAGAACGUGAUCGGGCUGCUGGACGUAUUCACUCCUGAUGAGЖCCCUGGAUGACUUCACGGACUUUUACCUGGUGAUGCCGUUCAUGGGCACCGACCUGGGCAAGCUCAUGAAACAUGAGAAGCUAGGCGAGGACCGGAUCCAGUUCCUCGUGUACCAGAUGCUGAAGGGGCUGAGGUAUAUCCACGCUGCCGGCAUCAPCCACAGAGUGAGUCCCGGUGGAGAAGCCGCUCAUCAGCCCUCCCCCAGUGCAAUCCCCCCGCCUCCACGUCCCACCUGUGAGGAUGUGAUGGGGUCUGGGUGCUGAGCCACGCCCUAUGCACAGCCCCUGGUGGGAACCUGCCUGGGUGCCCAGGACCUGAAGCCCGGCAACCUGGCUGUGAACGAAGACUGUGAGCUGAAGAUCCUGGACUUCGGCCUGGCCAGGCAGGCAGACAGUGAGAUGACUGGGUACGUGGUGACCCGGUGGUACCGGGCUCCCGAGGUCAUCUUGAAUUGGAUGCGCUACACGCAGACGGUGGACAUCUGGUCUGUGGGCUGCAUCAUGGCGGAGAUGAUCACAGGCAAGACGCUGUUCAAGGGCAGCGACCЖCCUGGACCAGCUGAAGGAGAUCAUGAAGGUGACGGGGACGCCUCCGGCUGAGUUUGUGCAGCGGCUGCAGAGCGAUGAGGCCAAGAACUACЖUGAAGGGCCUCCCCGAAUUGGAGAAGAAGGAUUUUGCCUCUAUCCUGACCAAUGCAAGCCCUCUGGCUGUGAACCUCCUGGAGAAGAUGCUGGUGCUGGACGCGGAGCAGCGGGUGACGGCAGGCGAGGCGCUGGCCCAPCCCUACUUCGAGUCCCUGCACGACACGGAAGAUGAGCCCCAGGUCCAGAAGUAUGAUGACUCCUUUGACGACGUUGACCGCACACUGGAUGAAUGGAAGCGUGUUACUUACЖAAGAGGUGCUCAGCUUCAAGCCUCCCCGGCAGCUGGGGGCCAGGGUCUCCAAGGAGACGCCUCUGUGAAGAUCUCUGGGCUCCGGGGUGGCAGUGAGGACCACCUUCACCUUCCACCUGAGAGGGGЖCUCUCGUUGCCACCUUGACCUUGGCUGGGGCUUGCAUCCCAAGGCAPCCAUCAGAGCAGACGCCCGGGUUCCAUGGЖCCCPCCUCCCCACGGCCAUGCCUCUGCUCUUGGGCGCCCAUCAUGGAGGAGCACCUGAЖCUUUCUGGЖCAAGACCUCUGGCCGACCUGGGGAUGGCCUCUGAUCCCUGGAGCAGUGGCCCACUUGCCCGGUGCUCUCAGAAACCUCAGAGCUGGUGGGGCUCCAGAUCAGGCCUUGGCCUCUGAGCCCUGCCUGCUCUGGGCCAUGCAGAGGAAGGЖCAGAGGGUGGGCGCAGGGCACCAACUCAGGGACAUCCCCUCUCCUGGGCGACGUCAGUGGЖCCUUCCUGCACCCCCAGCCUGGAAUGUAAAUCAGCUGUGUGGUGCCCGCGUGGCUGGAAGGAAAUAGACCCUUUUGUAGCUCCC
Sequence (SHORT NAMES ENCODING) GCAGGCUCUGCGGGGUGGGCAGCUCCCGGGCCUGCCAUGAGCUCUCCGCCGCCCGCCCGCAGUGGCUUUUACCGCCAGGAGGUGACCAAGACGGCCUGGGAGGUGCGCGCCGUGUACCGGGACCUGCAGCCCGUGGGCUCGGGCGCCUACGGCGCGGUGUGCUCGGCCGUGGACGGCCGCACCGGCGCUAAGGUGGCCAUCAAGAAGCUGUAUCGGCCUUUCCAGUCCGAGCUGUUCGCCAAGCGCGCCUACCGCGAGCUGCGCCUGCUCAAGCACAUGCGCCACGAGAACGUGAUCGGGCUGCUGGACGUAUUCACUCCUGAUGAGm6ACCCUGGAUGACUUCACGGACUUUUACCUGGUGAUGCCGUUCAUGGGCACCGACCUGGGCAAGCUCAUGAAACAUGAGAAGCUAGGCGAGGACCGGAUCCAGUUCCUCGUGUACCAGAUGCUGAAGGGGCUGAGGUAUAUCCACGCUGCCGGCAUCAYCCACAGAGUGAGUCCCGGUGGAGAAGCCGCUCAUCAGCCCUCCCCCAGUGCAAUCCCCCCGCCUCCACGUCCCACCUGUGAGGAUGUGAUGGGGUCUGGGUGCUGAGCCACGCCCUAUGCACAGCCCCUGGUGGGAACCUGCCUGGGUGCCCAGGACCUGAAGCCCGGCAACCUGGCUGUGAACGAAGACUGUGAGCUGAAGAUCCUGGACUUCGGCCUGGCCAGGCAGGCAGACAGUGAGAUGACUGGGUACGUGGUGACCCGGUGGUACCGGGCUCCCGAGGUCAUCUUGAAUUGGAUGCGCUACACGCAGACGGUGGACAUCUGGUCUGUGGGCUGCAUCAUGGCGGAGAUGAUCACAGGCAAGACGCUGUUCAAGGGCAGCGACCm6ACCUGGACCAGCUGAAGGAGAUCAUGAAGGUGACGGGGACGCCUCCGGCUGAGUUUGUGCAGCGGCUGCAGAGCGAUGAGGCCAAGAACUACm6AUGAAGGGCCUCCCCGAAUUGGAGAAGAAGGAUUUUGCCUCUAUCCUGACCAAUGCAAGCCCUCUGGCUGUGAACCUCCUGGAGAAGAUGCUGGUGCUGGACGCGGAGCAGCGGGUGACGGCAGGCGAGGCGCUGGCCCAYCCCUACUUCGAGUCCCUGCACGACACGGAAGAUGAGCCCCAGGUCCAGAAGUAUGAUGACUCCUUUGACGACGUUGACCGCACACUGGAUGAAUGGAAGCGUGUUACUUACm6AAAGAGGUGCUCAGCUUCAAGCCUCCCCGGCAGCUGGGGGCCAGGGUCUCCAAGGAGACGCCUCUGUGAAGAUCUCUGGGCUCCGGGGUGGCAGUGAGGACCACCUUCACCUUCCACCUGAGAGGGGm6ACUCUCGUUGCCACCUUGACCUUGGCUGGGGCUUGCAUCCCAAGGCAYCCAUCAGAGCAGACGCCCGGGUUCCAUGGm6ACCCYCCUCCCCACGGCCAUGCCUCUGCUCUUGGGCGCCCAUCAUGGAGGAGCACCUGAm6ACUUUCUGGm6ACAAGACCUCUGGCCGACCUGGGGAUGGCCUCUGAUCCCUGGAGCAGUGGCCCACUUGCCCGGUGCUCUCAGAAACCUCAGAGCUGGUGGGGCUCCAGAUCAGGCCUUGGCCUCUGAGCCCUGCCUGCUCUGGGCCAUGCAGAGGAAGGm6ACAGAGGGUGGGCGCAGGGCACCAACUCAGGGACAUCCCCUCUCCUGGGCGACGUCAGUGGm6ACCUUCCUGCACCCCCAGCCUGGAAUGUAAAUCAGCUGUGUGGUGCCCGCGUGGCUGGAAGGAAAUAGACCCUUUUGUAGCUCCC
Sequence (MODOMICS CODE ENCODING) GCAGGCUCUGCGGGGUGGGCAGCUCCCGGGCCUGCCAUGAGCUCUCCGCCGCCCGCCCGCAGUGGCUUUUACCGCCAGGAGGUGACCAAGACGGCCUGGGAGGUGCGCGCCGUGUACCGGGACCUGCAGCCCGUGGGCUCGGGCGCCUACGGCGCGGUGUGCUCGGCCGUGGACGGCCGCACCGGCGCUAAGGUGGCCAUCAAGAAGCUGUAUCGGCCUUUCCAGUCCGAGCUGUUCGCCAAGCGCGCCUACCGCGAGCUGCGCCUGCUCAAGCACAUGCGCCACGAGAACGUGAUCGGGCUGCUGGACGUAUUCACUCCUGAUGAG2000000006ACCCUGGAUGACUUCACGGACUUUUACCUGGUGAUGCCGUUCAUGGGCACCGACCUGGGCAAGCUCAUGAAACAUGAGAAGCUAGGCGAGGACCGGAUCCAGUUCCUCGUGUACCAGAUGCUGAAGGGGCUGAGGUAUAUCCACGCUGCCGGCAUCA2000000009UCCACAGAGUGAGUCCCGGUGGAGAAGCCGCUCAUCAGCCCUCCCCCAGUGCAAUCCCCCCGCCUCCACGUCCCACCUGUGAGGAUGUGAUGGGGUCUGGGUGCUGAGCCACGCCCUAUGCACAGCCCCUGGUGGGAACCUGCCUGGGUGCCCAGGACCUGAAGCCCGGCAACCUGGCUGUGAACGAAGACUGUGAGCUGAAGAUCCUGGACUUCGGCCUGGCCAGGCAGGCAGACAGUGAGAUGACUGGGUACGUGGUGACCCGGUGGUACCGGGCUCCCGAGGUCAUCUUGAAUUGGAUGCGCUACACGCAGACGGUGGACAUCUGGUCUGUGGGCUGCAUCAUGGCGGAGAUGAUCACAGGCAAGACGCUGUUCAAGGGCAGCGACC2000000006ACCUGGACCAGCUGAAGGAGAUCAUGAAGGUGACGGGGACGCCUCCGGCUGAGUUUGUGCAGCGGCUGCAGAGCGAUGAGGCCAAGAACUAC2000000006AUGAAGGGCCUCCCCGAAUUGGAGAAGAAGGAUUUUGCCUCUAUCCUGACCAAUGCAAGCCCUCUGGCUGUGAACCUCCUGGAGAAGAUGCUGGUGCUGGACGCGGAGCAGCGGGUGACGGCAGGCGAGGCGCUGGCCCA2000000009UCCCUACUUCGAGUCCCUGCACGACACGGAAGAUGAGCCCCAGGUCCAGAAGUAUGAUGACUCCUUUGACGACGUUGACCGCACACUGGAUGAAUGGAAGCGUGUUACUUAC2000000006AAAGAGGUGCUCAGCUUCAAGCCUCCCCGGCAGCUGGGGGCCAGGGUCUCCAAGGAGACGCCUCUGUGAAGAUCUCUGGGCUCCGGGGUGGCAGUGAGGACCACCUUCACCUUCCACCUGAGAGGGG2000000006ACUCUCGUUGCCACCUUGACCUUGGCUGGGGCUUGCAUCCCAAGGCA2000000009UCCAUCAGAGCAGACGCCCGGGUUCCAUGG2000000006ACCC2000000009UCCUCCCCACGGCCAUGCCUCUGCUCUUGGGCGCCCAUCAUGGAGGAGCACCUGA2000000006ACUUUCUGG2000000006ACAAGACCUCUGGCCGACCUGGGGAUGGCCUCUGAUCCCUGGAGCAGUGGCCCACUUGCCCGGUGCUCUCAGAAACCUCAGAGCUGGUGGGGCUCCAGAUCAGGCCUUGGCCUCUGAGCCCUGCCUGCUCUGGGCCAUGCAGAGGAAGG2000000006ACAGAGGGUGGGCGCAGGGCACCAACUCAGGGACAUCCCCUCUCCUGGGCGACGUCAGUGG2000000006ACCUUCCUGCACCCCCAGCCUGGAAUGUAAAUCAGCUGUGUGGUGCCCGCGUGGCUGGAAGGAAAUAGACCCUUUUGUAGCUCCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 328 485 875 967 1107 1219 1346 1393 1423 1427 1482 1491 1640 1701
Modification Positions m6A Y m6A m6A Y m6A m6A Y m6A Y m6A m6A m6A m6A
Genomic Coordinates 22:50258265:- 22:50256942:- 22:50255694:- 22:50255519:- 22:50255297:- 22:50253469:- 22:50253342:- 22:50253295:- 22:50253265:- 22:50253261:- 22:50253206:- 22:50253197:- 22:50253048:- 22:50252987:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
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S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
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BtsJQJ3DteUq
dknfVe6BK8aP
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JkWoGWVwjNda
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3kRDPWwiRCgi
L6w2k2VEv4EY
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Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
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3TeAZFYFxgvp
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VL7zkHvkfkoB
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BtsJQJ3DteUq
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Yfn77uLS5tv8