Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000409496
Gene ID: ENSG00000188064
Gene Name: WNT7B
Sequence (UNICHARACTER ENCODING) GGGUGUCCCAGCCAAGGCAACUUGGGCAAGCCCUGGAGGCGGCUCCCACCGCACGCUCCGGUCAGCCUCCCCUUUAAAAAAACCCGCCGGGGGAGGAGGCGGAUGUAGGGGCGGCCCGUCCAAUGGCAGCUGCGCGCCUCGGGAGACUUGGAGAAGUGAGCCAGAGCGAGCGACAGAGCCGGUUCGCACCGACAGACGGACGGAGGUCCAGACCGCAGCCAAGGCGCGCCCGCUGCCCCCGGCCGGGUCCCCGCCCCGCACUCCAGCCCCAGCUCCCGCCGCUGCCCCAGACCCAGCGCCAUGCGCGGCCCUAGCGGCGGGGCACGGGCGACAACUGCGCCCGGGCCCACGAGACCCGGCCCCUAGCGCCCAGCGCCGCCGCCCUGCAUCGGGGAGCUCCGCGGGGACCCCGGCCUCAGCUGGCCCAGGCGCCCGGCCCGCGGAGCCUGUUCAGCCCCGCCAGGCACGCCGGCCCACCAUGCUUCUACUGUCGCCGCGCAGCGCGCUCGUCUCCGUCUAUUGCCCGCAGAUCUUUCUCCUCCUGUCCAGCGGCAGCUACUUAGCACUGUCAUCCGUGGUGGCCCUGGGAGCCAACAUCAUCUGCAACAAGAUUCCUGGCCUAGCCCCGCGGCAGCGUGCCAUCUGCCAGAGUCGGCCCGAUGCCAUCAUUGUGAUUGGGGAGGGGGCGCAGAUGGGCAUCAACGAGUGCCAGUACCAGUUCCGCUUCGGACGCUGGAACUGCUCUGCCCUCGGCGAGAAGACCGUCUUCGGGCAAGAGCUCCGAGUAGGGAGCCGUGAGGCUGCCUUCACGUACGCCAUCACCGCGGCUGGCGUGGCGCACGCCGUCACCGCUGCCUGCAGCCAAGGGAACCUGAGCAACUGCGGCUGCGACCGCGAGAAGCAGGGCUACUACAACCAAGCCGAGGGCUGGAAGUGGGGCGGCUGCUCGGCCGACGUGCGUUACGGCAUCGACUUCUCCCGGCGCUUCGUGGACGCUCGGGAGAUCAAGAAGAACGCGCGGCGCCUCAUGAACCUGCAUAACAAUGAGGCCGGCAGGAAGGUUCUAGAGGACCGGAUGCAGCUGGAGUGCAAGUGCCACGGCGUGUCUGGCUCCUGCACCACCAAAACCUGCUGGACCACGCUGCCCAAGUUCCGAGAGGUGGGCCACCUGCUGAAGGAGAAGUACAACGCGGCCGUGCAGGUGGAGGUGGUGCGGGCCAGCCGUCUGCGGCAGCCCACCUUCCUGCGCAUCAAACAGCUGCGCAGCUAUCAGAAGCCCAUGGAGACAGACCUGGUGUACAUUGAGAAGUCGCCCAACUACUGCGAGGAGGACGCGGCCACGGGCAGCGUGGGCACGCAGGGCCGUCUCUGCAACCGCACGUCGCCCGGCGCGGACGGCUGUGACACCAUGUGCUGCGGCCGAGGCUACAACACCCACCAGUACACCAAGGUGUGGCAGUGCAACUGCAAAUUCCACUGGUGCUGCUUCGUCAAGUGCAACACCUGCAGCGAGCGCACCGAGGUCUUCACCUGCAAGUGAGGCCAGGCCCGGAGGCGGCCGCGGGCACCCUGGAACCCGGCGGCAUUUUGCACAPCCACUCCUCACCUUCCCUGCCUUGGUGCUGCCAGCAGCAGЖCAUAGЖCGGGUGCAGAAGCGGGGAGCUCCAGGUGCAGGAGGGCACCGGCCGGGGCCCACGCCCUCUGCCCGCCUCCCUGGGGCUCCUUCCUGCCACCPCCUCCCAUCACCUCCUGCGGCAGAACAGCACCCGUGACCCACCCAGAGAGCAAGGCCAGGGGUCUUGGUGCUCCCCGACGGGGCCCGGCAAGUUCUCUUUCUUCUCUCUGGGAAAAUGAЖCGUCCAGGЖCACACCUGUAUCCCAGAGAGCAAAGUGAUGAGGAGЖCUGAGCGUCCCCAGCCCCACCUGGCGGCAUGGЖCACAGAAAAGCUACGCCGGCUGGCCUCUCCAGACCAGUUCCCAGGCUGGGUCUGCCGCUGGGCCCUGGGGCGGUGGGGЖCAGAUGUUGACACAAAUUAUUUAUGUUUUCUUAGUAUCAGAAGAGGAUUCUCGGCACUAЖCACAUAGCCAGUCCUAЖCUCCGUЖCUCUGUGUCAGCCCAUCCCCUAGACACCCUCUGUUUCCUUUCCCGGCCCCACCUGGCCGGCCCUCUGCCCCUGCAGAGCUGAGGCAGCCUGGGGUUGAUGGGGACCACGCGGUGCCUGCAGGUCCUAGAAGUGAGCUGGGCAGGGGCUCUUCAGACCACACAGCCCUGACCGGGCCUUGGAGGAGAGCCA
Sequence (SHORT NAMES ENCODING) GGGUGUCCCAGCCAAGGCAACUUGGGCAAGCCCUGGAGGCGGCUCCCACCGCACGCUCCGGUCAGCCUCCCCUUUAAAAAAACCCGCCGGGGGAGGAGGCGGAUGUAGGGGCGGCCCGUCCAAUGGCAGCUGCGCGCCUCGGGAGACUUGGAGAAGUGAGCCAGAGCGAGCGACAGAGCCGGUUCGCACCGACAGACGGACGGAGGUCCAGACCGCAGCCAAGGCGCGCCCGCUGCCCCCGGCCGGGUCCCCGCCCCGCACUCCAGCCCCAGCUCCCGCCGCUGCCCCAGACCCAGCGCCAUGCGCGGCCCUAGCGGCGGGGCACGGGCGACAACUGCGCCCGGGCCCACGAGACCCGGCCCCUAGCGCCCAGCGCCGCCGCCCUGCAUCGGGGAGCUCCGCGGGGACCCCGGCCUCAGCUGGCCCAGGCGCCCGGCCCGCGGAGCCUGUUCAGCCCCGCCAGGCACGCCGGCCCACCAUGCUUCUACUGUCGCCGCGCAGCGCGCUCGUCUCCGUCUAUUGCCCGCAGAUCUUUCUCCUCCUGUCCAGCGGCAGCUACUUAGCACUGUCAUCCGUGGUGGCCCUGGGAGCCAACAUCAUCUGCAACAAGAUUCCUGGCCUAGCCCCGCGGCAGCGUGCCAUCUGCCAGAGUCGGCCCGAUGCCAUCAUUGUGAUUGGGGAGGGGGCGCAGAUGGGCAUCAACGAGUGCCAGUACCAGUUCCGCUUCGGACGCUGGAACUGCUCUGCCCUCGGCGAGAAGACCGUCUUCGGGCAAGAGCUCCGAGUAGGGAGCCGUGAGGCUGCCUUCACGUACGCCAUCACCGCGGCUGGCGUGGCGCACGCCGUCACCGCUGCCUGCAGCCAAGGGAACCUGAGCAACUGCGGCUGCGACCGCGAGAAGCAGGGCUACUACAACCAAGCCGAGGGCUGGAAGUGGGGCGGCUGCUCGGCCGACGUGCGUUACGGCAUCGACUUCUCCCGGCGCUUCGUGGACGCUCGGGAGAUCAAGAAGAACGCGCGGCGCCUCAUGAACCUGCAUAACAAUGAGGCCGGCAGGAAGGUUCUAGAGGACCGGAUGCAGCUGGAGUGCAAGUGCCACGGCGUGUCUGGCUCCUGCACCACCAAAACCUGCUGGACCACGCUGCCCAAGUUCCGAGAGGUGGGCCACCUGCUGAAGGAGAAGUACAACGCGGCCGUGCAGGUGGAGGUGGUGCGGGCCAGCCGUCUGCGGCAGCCCACCUUCCUGCGCAUCAAACAGCUGCGCAGCUAUCAGAAGCCCAUGGAGACAGACCUGGUGUACAUUGAGAAGUCGCCCAACUACUGCGAGGAGGACGCGGCCACGGGCAGCGUGGGCACGCAGGGCCGUCUCUGCAACCGCACGUCGCCCGGCGCGGACGGCUGUGACACCAUGUGCUGCGGCCGAGGCUACAACACCCACCAGUACACCAAGGUGUGGCAGUGCAACUGCAAAUUCCACUGGUGCUGCUUCGUCAAGUGCAACACCUGCAGCGAGCGCACCGAGGUCUUCACCUGCAAGUGAGGCCAGGCCCGGAGGCGGCCGCGGGCACCCUGGAACCCGGCGGCAUUUUGCACAYCCACUCCUCACCUUCCCUGCCUUGGUGCUGCCAGCAGCAGm6ACAUAGm6ACGGGUGCAGAAGCGGGGAGCUCCAGGUGCAGGAGGGCACCGGCCGGGGCCCACGCCCUCUGCCCGCCUCCCUGGGGCUCCUUCCUGCCACCYCCUCCCAUCACCUCCUGCGGCAGAACAGCACCCGUGACCCACCCAGAGAGCAAGGCCAGGGGUCUUGGUGCUCCCCGACGGGGCCCGGCAAGUUCUCUUUCUUCUCUCUGGGAAAAUGAm6ACGUCCAGGm6ACACACCUGUAUCCCAGAGAGCAAAGUGAUGAGGAGm6ACUGAGCGUCCCCAGCCCCACCUGGCGGCAUGGm6ACACAGAAAAGCUACGCCGGCUGGCCUCUCCAGACCAGUUCCCAGGCUGGGUCUGCCGCUGGGCCCUGGGGCGGUGGGGm6ACAGAUGUUGACACAAAUUAUUUAUGUUUUCUUAGUAUCAGAAGAGGAUUCUCGGCACUAm6ACACAUAGCCAGUCCUAm6ACUCCGUm6ACUCUGUGUCAGCCCAUCCCCUAGACACCCUCUGUUUCCUUUCCCGGCCCCACCUGGCCGGCCCUCUGCCCCUGCAGAGCUGAGGCAGCCUGGGGUUGAUGGGGACCACGCGGUGCCUGCAGGUCCUAGAAGUGAGCUGGGCAGGGGCUCUUCAGACCACACAGCCCUGACCGGGCCUUGGAGGAGAGCCA
Sequence (MODOMICS CODE ENCODING) GGGUGUCCCAGCCAAGGCAACUUGGGCAAGCCCUGGAGGCGGCUCCCACCGCACGCUCCGGUCAGCCUCCCCUUUAAAAAAACCCGCCGGGGGAGGAGGCGGAUGUAGGGGCGGCCCGUCCAAUGGCAGCUGCGCGCCUCGGGAGACUUGGAGAAGUGAGCCAGAGCGAGCGACAGAGCCGGUUCGCACCGACAGACGGACGGAGGUCCAGACCGCAGCCAAGGCGCGCCCGCUGCCCCCGGCCGGGUCCCCGCCCCGCACUCCAGCCCCAGCUCCCGCCGCUGCCCCAGACCCAGCGCCAUGCGCGGCCCUAGCGGCGGGGCACGGGCGACAACUGCGCCCGGGCCCACGAGACCCGGCCCCUAGCGCCCAGCGCCGCCGCCCUGCAUCGGGGAGCUCCGCGGGGACCCCGGCCUCAGCUGGCCCAGGCGCCCGGCCCGCGGAGCCUGUUCAGCCCCGCCAGGCACGCCGGCCCACCAUGCUUCUACUGUCGCCGCGCAGCGCGCUCGUCUCCGUCUAUUGCCCGCAGAUCUUUCUCCUCCUGUCCAGCGGCAGCUACUUAGCACUGUCAUCCGUGGUGGCCCUGGGAGCCAACAUCAUCUGCAACAAGAUUCCUGGCCUAGCCCCGCGGCAGCGUGCCAUCUGCCAGAGUCGGCCCGAUGCCAUCAUUGUGAUUGGGGAGGGGGCGCAGAUGGGCAUCAACGAGUGCCAGUACCAGUUCCGCUUCGGACGCUGGAACUGCUCUGCCCUCGGCGAGAAGACCGUCUUCGGGCAAGAGCUCCGAGUAGGGAGCCGUGAGGCUGCCUUCACGUACGCCAUCACCGCGGCUGGCGUGGCGCACGCCGUCACCGCUGCCUGCAGCCAAGGGAACCUGAGCAACUGCGGCUGCGACCGCGAGAAGCAGGGCUACUACAACCAAGCCGAGGGCUGGAAGUGGGGCGGCUGCUCGGCCGACGUGCGUUACGGCAUCGACUUCUCCCGGCGCUUCGUGGACGCUCGGGAGAUCAAGAAGAACGCGCGGCGCCUCAUGAACCUGCAUAACAAUGAGGCCGGCAGGAAGGUUCUAGAGGACCGGAUGCAGCUGGAGUGCAAGUGCCACGGCGUGUCUGGCUCCUGCACCACCAAAACCUGCUGGACCACGCUGCCCAAGUUCCGAGAGGUGGGCCACCUGCUGAAGGAGAAGUACAACGCGGCCGUGCAGGUGGAGGUGGUGCGGGCCAGCCGUCUGCGGCAGCCCACCUUCCUGCGCAUCAAACAGCUGCGCAGCUAUCAGAAGCCCAUGGAGACAGACCUGGUGUACAUUGAGAAGUCGCCCAACUACUGCGAGGAGGACGCGGCCACGGGCAGCGUGGGCACGCAGGGCCGUCUCUGCAACCGCACGUCGCCCGGCGCGGACGGCUGUGACACCAUGUGCUGCGGCCGAGGCUACAACACCCACCAGUACACCAAGGUGUGGCAGUGCAACUGCAAAUUCCACUGGUGCUGCUUCGUCAAGUGCAACACCUGCAGCGAGCGCACCGAGGUCUUCACCUGCAAGUGAGGCCAGGCCCGGAGGCGGCCGCGGGCACCCUGGAACCCGGCGGCAUUUUGCACA2000000009UCCACUCCUCACCUUCCCUGCCUUGGUGCUGCCAGCAGCAG2000000006ACAUAG2000000006ACGGGUGCAGAAGCGGGGAGCUCCAGGUGCAGGAGGGCACCGGCCGGGGCCCACGCCCUCUGCCCGCCUCCCUGGGGCUCCUUCCUGCCACC2000000009UCCUCCCAUCACCUCCUGCGGCAGAACAGCACCCGUGACCCACCCAGAGAGCAAGGCCAGGGGUCUUGGUGCUCCCCGACGGGGCCCGGCAAGUUCUCUUUCUUCUCUCUGGGAAAAUGA2000000006ACGUCCAGG2000000006ACACACCUGUAUCCCAGAGAGCAAAGUGAUGAGGAG2000000006ACUGAGCGUCCCCAGCCCCACCUGGCGGCAUGG2000000006ACACAGAAAAGCUACGCCGGCUGGCCUCUCCAGACCAGUUCCCAGGCUGGGUCUGCCGCUGGGCCCUGGGGCGGUGGGG2000000006ACAGAUGUUGACACAAAUUAUUUAUGUUUUCUUAGUAUCAGAAGAGGAUUCUCGGCACUA2000000006ACACAUAGCCAGUCCUA2000000006ACUCCGU2000000006ACUCUGUGUCAGCCCAUCCCCUAGACACCCUCUGUUUCCUUUCCCGGCCCCACCUGGCCGGCCCUCUGCCCCUGCAGAGCUGAGGCAGCCUGGGGUUGAUGGGGACCACGCGGUGCCUGCAGGUCCUAGAAGUGAGCUGGGCAGGGGCUCUUCAGACCACACAGCCCUGACCGGGCCUUGGAGGAGAGCCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1595 1636 1642 1734 1854 1863 1899 1932 2011 2071 2088 2095
Modification Positions Y m6A m6A Y m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 22:45922801:- 22:45922760:- 22:45922754:- 22:45922662:- 22:45922542:- 22:45922533:- 22:45922497:- 22:45922464:- 22:45922385:- 22:45922325:- 22:45922308:- 22:45922301:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
93arJtwJmuS9
f6YSioLdAWpr
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
93arJtwJmuS9
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
93arJtwJmuS9
KENzb7mwdBd9
KjeH7Nsffuas
PF5iqBNSbHaa
UKen6WEino9G
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
bXBqJigD9oV3
f6YSioLdAWpr
Q36pf44ZRvxu
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G