Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000403663
Gene ID: ENSG00000100106
Gene Name: TRIOBP
Sequence (UNICHARACTER ENCODING) GUUUUAUGGGCGGAUGGAAGGGGCCGGGGCAGCGUCGGGGAAAGGAAGGGCCGGAGGCGCGGCGGCGGGCGGCCGAGAGGGGCGGCGGCGGCGGCGGCGGCGGGGUUCCCGCGCCGCGGAGCCCGGCCCGAGAGCCGCGUCCACGUUCCUGCCUCCUGCUCCCGCCGCCCUGGGGCGCCGCCAUGACGCCCGAUCUGCUCAACUUCAAGAAGGGAUGGAUGUCGAUCUUGGACGAGCCUGGAGAGCCUCCCUCCCCCUCGCUCACCACCACCUCUACUUCGCAGUGGAAGAAACAUUGGUUUGUGCUGACAGAUUCAAGUCUCAAAUAUUACЖGAGACUCCACUGCUGAGGAGGCAGAUGAGCUGGAUGGUGAGAUCGACCUGCGUUCCUGCACGGAUGUCACUGAGUACGCGGUGCAGCGCAACUAUGGCUUCCAGAUCCACЖCCAAGGAUGCUGUCUAUACCUUGUCGGCCAUGACCUCAGGCAUCCGGCGGAACUGGAUCGAGGCUCUGAGAAAGACCGUACGUCCAACUUCAGCCCCAGAUGUCACCAAGCUCUCGGACUCUAACAAGGAGAACGCGCUGCACAGCUACAGCACCCAGAAGGGCCCCCUGAAGGCAGGGGAGCAGCGGGCGGGCUCUGAGGUCAUCAGCCGGGGUGGCCCUCGGAAGGCGGACGGGCAGCGUCAGGCCUUGGACUACGUGGAGCUCUCGCCGCUGACCCAGGCUUCCCCGCAGCGGGCCCGCACCCCAGCCCGCACUCCUGACCGCCUGGCCAAGCAGGAGGAGCUGGAGCGGGЖCCUGGCCCAGCGCUCCGAGGAGCGGCGCAAGUGGUUUGAGGCCACAGACAGCAGGACCCCAGAGGUGCCUGCUGGUGAGGGGCCGCGCCGGGGCCUGGGUGCCCCCCUGACUGAGGACCAGCAAAACCGGCUUAGUGAGGAGAUCGAGAAGAAGUGGCAGGAGCUGGAGAAGCUGCCCCUGCGGGAGAAUAAGCGGGUGCCCCUCACUGCCCUGCUCAACCAAAGCCGCGGAGAGCGCCGAGGGCCCCCAAGUGACGGCCACGAGGCACUGGAGAAGGAGGUUCAGGCUCUUCGGGCCCAGCUGGAGGCGUGGCGUCUCCAAGGGGAGGCUCCUCAGAGUGCACUGAGAUCCCAGGAGGAUGGCCACAPCCCCCCGGGCUACAUCUCACAGGAGGCAUGUGAGCGCAGCCUGGCAGAGAUGGAGUCCUCGCACCAGCAGGUGAUGGAGGAGCUGCAGCGGCACCACGAGCGGGAGCUGCAGCGCCUGCAGCAGGAGAAGGAGUGGCUCCUGGCUGAGGAGACGGCAGCCACGGCCUCAGCCAUUGAAGCCAUGAAGAAGGCCUACCAGGAAGAGCUGAGCCGAGAGCUGAGCAAAACACGGAGUCUCCAGCAGGGCCCGGAUGGCCUCCGGAAGCAGCACCAGUCAGAUGUGGAGGCACUGAAGCGAGAGCUGCAGGUGCUAUCGGAGCAGUACUCGCAGAAGUGCCUGGAGAUUGGGGCACUCAUGCGGCAGGCUGAGGAGCGCGAGCACACGCUGCGCCGCUGCCAGCAGGAGGGCCAGGAGCUGCUGCGCCACAACCAGGAGCUGCAUGGCCGCCUGUCAGAGGAGAUAGACCAGCUGCGCGGCUUCAUUGCCUCGCAGGGCAUGGGCAAUGGCUGCGGGCGCAGCAACGAGCGGAGUUCCUGCGAGCUAGAGGUGCUGCUUCGCGUAAAAGAAAACGAACUCCAGUACCUAAAGAAGGAGGUGCAGUGCCUCCGGGACGAGCUCCAGAUGAUGCAGAAGGACAAGCGCUUCACCUCGGGAAAGUACCAGGACGUCUAUGUGGAGCUGAGCCACAUCAAGACACGGUCUGAGCGGGAGAUCGAGCAGCUGAAGGAGCACCUGCGUCUUGCCAUGGCCGCCCUCCAGGAGAAGGAGUCGAUGCGCAACAGCCUGGCUGAGUAGAGGUCCCGCCCAGCUGCAGACCCUCCAGGCUGGAGGACCAGCCGCCCUCCUUCCCUCCUGGAUGGAAGUAAAAAGCCAAGCUUUCUCCCCACCCUCUGUGGGCCACACGUGCACUUGCACCCACCACACACACACACACACACACACACACACACACAGACACACAGACACAUACGCACACACGUGCACACAUGUACACACGGAUACACACACACACACACACACUGCAUAUCUGAGCGCGCCCCUCGCACUGGGUCUCACCUUGCACCUUCUUCAGGAUUUUAUAUGUGAAGAGAUUUUUAUAUAGAUUUUUUUCCUUUUUUUCCAAAACACUPUAUACUUUAAAAAAAAAAAAAAAAA
Sequence (SHORT NAMES ENCODING) GUUUUAUGGGCGGAUGGAAGGGGCCGGGGCAGCGUCGGGGAAAGGAAGGGCCGGAGGCGCGGCGGCGGGCGGCCGAGAGGGGCGGCGGCGGCGGCGGCGGCGGGGUUCCCGCGCCGCGGAGCCCGGCCCGAGAGCCGCGUCCACGUUCCUGCCUCCUGCUCCCGCCGCCCUGGGGCGCCGCCAUGACGCCCGAUCUGCUCAACUUCAAGAAGGGAUGGAUGUCGAUCUUGGACGAGCCUGGAGAGCCUCCCUCCCCCUCGCUCACCACCACCUCUACUUCGCAGUGGAAGAAACAUUGGUUUGUGCUGACAGAUUCAAGUCUCAAAUAUUACm6AGAGACUCCACUGCUGAGGAGGCAGAUGAGCUGGAUGGUGAGAUCGACCUGCGUUCCUGCACGGAUGUCACUGAGUACGCGGUGCAGCGCAACUAUGGCUUCCAGAUCCACm6ACCAAGGAUGCUGUCUAUACCUUGUCGGCCAUGACCUCAGGCAUCCGGCGGAACUGGAUCGAGGCUCUGAGAAAGACCGUACGUCCAACUUCAGCCCCAGAUGUCACCAAGCUCUCGGACUCUAACAAGGAGAACGCGCUGCACAGCUACAGCACCCAGAAGGGCCCCCUGAAGGCAGGGGAGCAGCGGGCGGGCUCUGAGGUCAUCAGCCGGGGUGGCCCUCGGAAGGCGGACGGGCAGCGUCAGGCCUUGGACUACGUGGAGCUCUCGCCGCUGACCCAGGCUUCCCCGCAGCGGGCCCGCACCCCAGCCCGCACUCCUGACCGCCUGGCCAAGCAGGAGGAGCUGGAGCGGGm6ACCUGGCCCAGCGCUCCGAGGAGCGGCGCAAGUGGUUUGAGGCCACAGACAGCAGGACCCCAGAGGUGCCUGCUGGUGAGGGGCCGCGCCGGGGCCUGGGUGCCCCCCUGACUGAGGACCAGCAAAACCGGCUUAGUGAGGAGAUCGAGAAGAAGUGGCAGGAGCUGGAGAAGCUGCCCCUGCGGGAGAAUAAGCGGGUGCCCCUCACUGCCCUGCUCAACCAAAGCCGCGGAGAGCGCCGAGGGCCCCCAAGUGACGGCCACGAGGCACUGGAGAAGGAGGUUCAGGCUCUUCGGGCCCAGCUGGAGGCGUGGCGUCUCCAAGGGGAGGCUCCUCAGAGUGCACUGAGAUCCCAGGAGGAUGGCCACAYCCCCCCGGGCUACAUCUCACAGGAGGCAUGUGAGCGCAGCCUGGCAGAGAUGGAGUCCUCGCACCAGCAGGUGAUGGAGGAGCUGCAGCGGCACCACGAGCGGGAGCUGCAGCGCCUGCAGCAGGAGAAGGAGUGGCUCCUGGCUGAGGAGACGGCAGCCACGGCCUCAGCCAUUGAAGCCAUGAAGAAGGCCUACCAGGAAGAGCUGAGCCGAGAGCUGAGCAAAACACGGAGUCUCCAGCAGGGCCCGGAUGGCCUCCGGAAGCAGCACCAGUCAGAUGUGGAGGCACUGAAGCGAGAGCUGCAGGUGCUAUCGGAGCAGUACUCGCAGAAGUGCCUGGAGAUUGGGGCACUCAUGCGGCAGGCUGAGGAGCGCGAGCACACGCUGCGCCGCUGCCAGCAGGAGGGCCAGGAGCUGCUGCGCCACAACCAGGAGCUGCAUGGCCGCCUGUCAGAGGAGAUAGACCAGCUGCGCGGCUUCAUUGCCUCGCAGGGCAUGGGCAAUGGCUGCGGGCGCAGCAACGAGCGGAGUUCCUGCGAGCUAGAGGUGCUGCUUCGCGUAAAAGAAAACGAACUCCAGUACCUAAAGAAGGAGGUGCAGUGCCUCCGGGACGAGCUCCAGAUGAUGCAGAAGGACAAGCGCUUCACCUCGGGAAAGUACCAGGACGUCUAUGUGGAGCUGAGCCACAUCAAGACACGGUCUGAGCGGGAGAUCGAGCAGCUGAAGGAGCACCUGCGUCUUGCCAUGGCCGCCCUCCAGGAGAAGGAGUCGAUGCGCAACAGCCUGGCUGAGUAGAGGUCCCGCCCAGCUGCAGACCCUCCAGGCUGGAGGACCAGCCGCCCUCCUUCCCUCCUGGAUGGAAGUAAAAAGCCAAGCUUUCUCCCCACCCUCUGUGGGCCACACGUGCACUUGCACCCACCACACACACACACACACACACACACACACACACAGACACACAGACACAUACGCACACACGUGCACACAUGUACACACGGAUACACACACACACACACACACUGCAUAUCUGAGCGCGCCCCUCGCACUGGGUCUCACCUUGCACCUUCUUCAGGAUUUUAUAUGUGAAGAGAUUUUUAUAUAGAUUUUUUUCCUUUUUUUCCAAAACACUYUAUACUUUAAAAAAAAAAAAAAAAA
Sequence (MODOMICS CODE ENCODING) GUUUUAUGGGCGGAUGGAAGGGGCCGGGGCAGCGUCGGGGAAAGGAAGGGCCGGAGGCGCGGCGGCGGGCGGCCGAGAGGGGCGGCGGCGGCGGCGGCGGCGGGGUUCCCGCGCCGCGGAGCCCGGCCCGAGAGCCGCGUCCACGUUCCUGCCUCCUGCUCCCGCCGCCCUGGGGCGCCGCCAUGACGCCCGAUCUGCUCAACUUCAAGAAGGGAUGGAUGUCGAUCUUGGACGAGCCUGGAGAGCCUCCCUCCCCCUCGCUCACCACCACCUCUACUUCGCAGUGGAAGAAACAUUGGUUUGUGCUGACAGAUUCAAGUCUCAAAUAUUAC2000000006AGAGACUCCACUGCUGAGGAGGCAGAUGAGCUGGAUGGUGAGAUCGACCUGCGUUCCUGCACGGAUGUCACUGAGUACGCGGUGCAGCGCAACUAUGGCUUCCAGAUCCAC2000000006ACCAAGGAUGCUGUCUAUACCUUGUCGGCCAUGACCUCAGGCAUCCGGCGGAACUGGAUCGAGGCUCUGAGAAAGACCGUACGUCCAACUUCAGCCCCAGAUGUCACCAAGCUCUCGGACUCUAACAAGGAGAACGCGCUGCACAGCUACAGCACCCAGAAGGGCCCCCUGAAGGCAGGGGAGCAGCGGGCGGGCUCUGAGGUCAUCAGCCGGGGUGGCCCUCGGAAGGCGGACGGGCAGCGUCAGGCCUUGGACUACGUGGAGCUCUCGCCGCUGACCCAGGCUUCCCCGCAGCGGGCCCGCACCCCAGCCCGCACUCCUGACCGCCUGGCCAAGCAGGAGGAGCUGGAGCGGG2000000006ACCUGGCCCAGCGCUCCGAGGAGCGGCGCAAGUGGUUUGAGGCCACAGACAGCAGGACCCCAGAGGUGCCUGCUGGUGAGGGGCCGCGCCGGGGCCUGGGUGCCCCCCUGACUGAGGACCAGCAAAACCGGCUUAGUGAGGAGAUCGAGAAGAAGUGGCAGGAGCUGGAGAAGCUGCCCCUGCGGGAGAAUAAGCGGGUGCCCCUCACUGCCCUGCUCAACCAAAGCCGCGGAGAGCGCCGAGGGCCCCCAAGUGACGGCCACGAGGCACUGGAGAAGGAGGUUCAGGCUCUUCGGGCCCAGCUGGAGGCGUGGCGUCUCCAAGGGGAGGCUCCUCAGAGUGCACUGAGAUCCCAGGAGGAUGGCCACA2000000009UCCCCCCGGGCUACAUCUCACAGGAGGCAUGUGAGCGCAGCCUGGCAGAGAUGGAGUCCUCGCACCAGCAGGUGAUGGAGGAGCUGCAGCGGCACCACGAGCGGGAGCUGCAGCGCCUGCAGCAGGAGAAGGAGUGGCUCCUGGCUGAGGAGACGGCAGCCACGGCCUCAGCCAUUGAAGCCAUGAAGAAGGCCUACCAGGAAGAGCUGAGCCGAGAGCUGAGCAAAACACGGAGUCUCCAGCAGGGCCCGGAUGGCCUCCGGAAGCAGCACCAGUCAGAUGUGGAGGCACUGAAGCGAGAGCUGCAGGUGCUAUCGGAGCAGUACUCGCAGAAGUGCCUGGAGAUUGGGGCACUCAUGCGGCAGGCUGAGGAGCGCGAGCACACGCUGCGCCGCUGCCAGCAGGAGGGCCAGGAGCUGCUGCGCCACAACCAGGAGCUGCAUGGCCGCCUGUCAGAGGAGAUAGACCAGCUGCGCGGCUUCAUUGCCUCGCAGGGCAUGGGCAAUGGCUGCGGGCGCAGCAACGAGCGGAGUUCCUGCGAGCUAGAGGUGCUGCUUCGCGUAAAAGAAAACGAACUCCAGUACCUAAAGAAGGAGGUGCAGUGCCUCCGGGACGAGCUCCAGAUGAUGCAGAAGGACAAGCGCUUCACCUCGGGAAAGUACCAGGACGUCUAUGUGGAGCUGAGCCACAUCAAGACACGGUCUGAGCGGGAGAUCGAGCAGCUGAAGGAGCACCUGCGUCUUGCCAUGGCCGCCCUCCAGGAGAAGGAGUCGAUGCGCAACAGCCUGGCUGAGUAGAGGUCCCGCCCAGCUGCAGACCCUCCAGGCUGGAGGACCAGCCGCCCUCCUUCCCUCCUGGAUGGAAGUAAAAAGCCAAGCUUUCUCCCCACCCUCUGUGGGCCACACGUGCACUUGCACCCACCACACACACACACACACACACACACACACACACAGACACACAGACACAUACGCACACACGUGCACACAUGUACACACGGAUACACACACACACACACACACUGCAUAUCUGAGCGCGCCCCUCGCACUGGGUCUCACCUUGCACCUUCUUCAGGAUUUUAUAUGUGAAGAGAUUUUUAUAUAGAUUUUUUUCCUUUUUUUCCAAAACACU2000000009UUAUACUUUAAAAAAAAAAAAAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 333 444 799 1168 2299
Modification Positions m6A m6A m6A Y Y
Genomic Coordinates 22:37754964:+ 22:37755550:+ 22:37757858:+ 22:37759242:+ 22:37774115:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3kRDPWwiRCgi
L6w2k2VEv4EY
bXBqJigD9oV3
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
JkWoGWVwjNda
Yfn77uLS5tv8